RNA id: XM_043248360.1


Basic Information

Item Value
RNA id XM_043248360.1
length 3578
RNA type mRNA
GC content 0.43
exon number 12
gene id slc9a2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7106559 ~ 7117477 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgtatatataagtaataacattaaatgtaaaaaatgagtatttttttccactactgataacattacaaacataaaatagtaataactCATTCTGAACCCAATGCTCCTTAAACCTCTTCGTAGAAATATTACTTCTGAACTGTTTGTTATGTCGGAGAGGAACAGGTTACCTACAGGAAGCGAAACTAATTGAAAGGGAAGGACCAGGCGTACCACACACCTGCCCGTCGAAACAGACCCTACTCAAGAGAGTGCCACGATTAGATGAAGggaacacttttaaaatgtatttttaattcttcaCATAGTCAGTTTTTATGTCAGCTTCTGGTATACATGCATGCACTCTGAGAAAATATGATGCTTAACTTTAATGGAAGGGCGCGTTTTAACTTTTTGATTTTGTGCGTAATTTGCGTTGCATCTCTTGGACACGGAGCAAACGTCTATGTTTCCACTTCTCCGTCTAAACGTCCTCCTTGGAGCCCGATGCAGGAGACTGATCCTGAGCCCGACCCAGATGAAAGCACCCAGGCGGTGTTTACACTGAATTACCCCCGCATTCAGATCCCCTTCGAGGTTACTGTATGGGTGCTGCTTGCGTCCTTCGCCAAAATAGgTTTCAATGTTTACCATAAGATCACGGTCTGGGTGCCAGAGTCATGTTTGCTGATCTCCATCGGTCTCATAGTCGGGGGCGTCATGCACTCGTTGCACGAGAAGCCTCCAGCGGTGCTCACCTCCGACGCCTTTTTCCTCTATATGTTGCCACTCATTGTTCTAGACTCGGGCTACTTCATGCCCACTCGGCCCTTCTTTGAGAACTTCGGCACGGTGCTGTGGTTCGCTGTGGTCGGCACCTTGTGGAATTCTGTCGGCATTGGCATCTCTCTGTTTGCCATCTGCCAGATCGAGGCGTTTGGTGTGCAGGACATTACCCTGCAGGAGAACTTCCTCTTCGCCTCCATCATCTCAGCCGTGGAACCGGTGGCTGTTCTCACTGTGTTTGAGGACATCAGCGTCCATGAGCAGCTCTACATTGTGATATTTGGAGAGTGCCTGTTCAACGATGCTCTCACTGTGGTGCTCTATAAACTTTTCAGTCATGTAGCAGCAGTGGAGGTGGTTGAAGCCGGATTAGTTTTTCTGAACATAGGTCGATTTTTTGTGGTGGGTTTAGGTGGAATGATTTTCGGCGTGGTGTTCGGCTTCATGGCAGCCTTCACCACACGTTTTACAGGAAAAGTGCGAGAGATCGAGCCTCTAATCATCTTCCTGTACAGCTACCTGGTCTACCTCATAGCTGAGCTCCTTGCCGTCTCCAGCATCATGGCTATTGTAGTCTGTGCCTTGACTATGAAGTATTACGTTGAGGAGAATGTATCCCAGCACTCCTGTACTACTGTTCGGCATGTCATTAAGATGATTGGAAGCATGTCGGAAACTCTGATCTTCTTCTTTCTGGGTGTTGTTACCATAACAACGGAGCACGAGTGGAACTGGGGCTACATCCTCTTTACTCTGCTGTTTGCTCTTCTTTGGAGAGTCCTTGGCATCCTGGTCCTAACGCAGATCATTAACCCCTTCCGCACGATTCCTTTCAACTTCAAGGATCAGTTTGGTTTGGCCTATAGCGGGCTGAGAGGAGCTGTGTCCTTTGCCTTGGCCTTCACTCTCCCAGACAGCGTTGGTCGCAAGAAGCTGTTCATCACAGGCACGATTGTCGTCATCCTCTTTACAGTGTTCATTCAGGGTATTACTATAAGACCCCTTCTAAAATTAATGAATGTTCGTAAGACAAACAGAAACCTGGAGACCATCAATGTAGAGATTCACAAAAGGTTAATGGAGCACACTGTTGCTGGTATAGAAGATCTTTGTGGACAATGGGGTCACTACTACTGGAAAGACAAGTTCATGAAGTTTAATAACCGGATCATTCGCAAGATTTTAATCCGTGATAATCGTCCCGAGTCGAGCATTGTGTCTCTGTATAAGAAACTGGAGCTTCAGAACGCCGTGGAGATACTGGACCAAATGTCCGGAGACATCAGCGCTGCCCCCTCTTTACTTTCAATGCAtgaagaaagaaagattgcCTTCAAGTCCAGGAGGAAGTTCTTGTCGTCTGATGTGACAAATATGCATGAACTCTTATCAAAGAACATGTACAAGATCAGACAGAGGACAGTGTCTTACACTAATAAGCACACATTACCCAATGAGATGACAGCCAGGGAGATCCTGATGAGACGCCACACAAGCTTACGACGCAGCTTCAGAGCTGGAAGCTTCCACGGCACTAATGCTGCAAAAATGTCCCAGAAGTATTTCTCTCTGCCCACGGGCGGGAGTCTGAACTCTGGATTTCCTCCAGCGAGGCTCGTACACACCGGAGATGATGAATCGGAGCTCGACTGCCCGTCAAACAGGCGTCCACATAGAATGTCATGCAAAGCAGCGATGCCTCTCAGGCCGTTAAGCACTCTGAAGGAAGTCAAGACAGGAAGTGAACAGAAGGAGGAGCATAGAGGCTACGGGAGGTCACAcctggggtcaaaggtcagccgTCCTGGACTTCTGACCTCACGTCTGCCTCCTGGCTCGTCTAGAAACTATAGTGATGACGACTGCGAGGGTGAGGAGCAGCAATCACGGTCGTCTCTACGTGGCTGGGTACAGGAACCGCAGCACAGCAGTGATGTGCAGCACTCTTTGATGAGGAGACCACGCTGACTGCCACAGAAACCATGGGACAAATGAGTTCACTGTAGTGCTGGGGCACTATGACTTGTGCAGTTGATCTCACCACTTTGCAAGAAACacataaacactaaaaagaCTAGATACTAGAATGTACTAGATATACTAGTCGCAAAATGTAAGAACTTTACACTAAAATCTTTTTATGACACTACAGCTATCAGAAATCGCAATGTTcagtatatattaatgttacattttgatGATATTGGATAAATTGGgtgcatttatatgttttacagataaataaaaaattgcaaaggaaactaaaatatttctttccacATTATAAGCAATTAATTCATGGGAGTtcaatttctatatatatatacacacataacattaattttgtattaatcttgctgtaaaatatacataaatatgaaagtataatatattatcaGAACAATCGGTGTGAGATAATTTTTCTCAGGAATGCAGTGCATACTCTTAAAatgaactataaaaaaataacaacagcagGATTTTGTGTATGCTCAAgcttcttttattaaaataaagtattgcgTTCTTACACAAAAATCTGTGTGATACTTAAACATGAACTTGGTATTTCTGACGGTAACAAAAAAccctacatttaaaataataattgtaaatacatAGATCGATTCAGacgataataaaaataagataacaTTTCCCGCACATAGACAACAAATGTTTGgtgtcagtaatattttataatgtggttgttgtgttttttttaatagctcgCTTATAcacaccaagactgcatttagttgatcaaaatacattaaaaacagtaatgttgaatgaaatattactacaa

Function

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0042539 hypotonic salinity response biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015385 sodium molecular_function

KEGG:

id description
K14722 SLC9A2, NHE2; solute carrier family 9 (sodium/hydrogen exchanger), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251860.1 lncRNA downstream 71198 6982678 ~ 7035361 (-) True LOC122352164
XR_006251826.1 lncRNA downstream 211162 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 223583 6882585 ~ 6882976 (-) True G68357
TU101051 lncRNA downstream 293544 6809848 ~ 6813015 (-) True G68328
TU101058 lncRNA downstream 312184 6793402 ~ 6794375 (-) True G68333
TU101108 lncRNA upstream 28963 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA upstream 28963 7146440 ~ 7153954 (-) False LOC122351350
TU101258 lncRNA upstream 210352 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 263813 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 697772 7815249 ~ 7818832 (-) True G68555
XM_043248370.1 mRNA downstream 8767 7093903 ~ 7097792 (-) True tmem182a
XM_043249731.1 mRNA downstream 115791 6987723 ~ 6990768 (-) True pou3f3a
XM_043249730.1 mRNA downstream 115792 6987723 ~ 6990767 (-) False pou3f3a
XM_043248245.1 mRNA downstream 131651 6969817 ~ 6974908 (-) True gpr45
XM_043249415.1 mRNA downstream 137352 6965229 ~ 6969207 (-) False c9h2orf49
XM_043248373.1 mRNA upstream 29678 7147155 ~ 7148631 (-) False LOC122351350
XM_043248362.1 mRNA upstream 37502 7154979 ~ 7194511 (-) False mgat4a
XM_043248361.1 mRNA upstream 37502 7154979 ~ 7194510 (-) True mgat4a
XM_043248369.1 mRNA upstream 78638 7196115 ~ 7200021 (-) True creg2
XM_043248352.1 mRNA upstream 82793 7200270 ~ 7214956 (-) False cracdla
TU100887 other downstream 845490 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1006676 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1062634 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1183739 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1736970 5349955 ~ 5369589 (-) False LOC122351925
TU101496 other upstream 896972 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 961659 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1223466 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2790711 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 3316030 10433507 ~ 10441872 (-) False trim13

Expression Profile