RNA id: XM_043248362.1


Basic Information

Item Value
RNA id XM_043248362.1
length 5192
RNA type mRNA
GC content 0.44
exon number 15
gene id mgat4a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7154979 ~ 7194511 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAGCTTGATTGAGAGATCACATCACCGCTGACGACTCTGGCAGGACGGTCCGTCAGATTTGCTATTTTAATGATCATTACAAAACGTGTTTGTGCTCTTTTTTTGGTTGGATAGTTTTGACGAGACCGAGCCGCGCCGGTTCGCTGTCCAATAGCAGGCCGAAAGTAACGGCAGGCATGAGGATTGCACATCTTTCTCTGGAAATGCATCAGTTCCGCTGGGCTGCCTCGTGACTCCAGCAGCGACCGAGAGgcgaaggaggaggaggaccgAGGCGCAGACAGCAGATGATCCGGGCCCCCGTCACCTCCTGCCCGCTCCCCTGAAGCGCGTATGCACGCCTGGATCAGGAGGACCAGAGGCGGCTGCACGGGGAGGCGCTGAAATGAGATGAGGCTCAGACATGGAACTGTTGCCACTGCGATTGTTTTCTTCACGTCGTTTCTCAGTCTGTCCTGGTACACGGCTTGGCAGAATGGCAAAGAAAAGCTGGTAGCCTATCAGAGGGAGTTTCACGCCCTGAGGGAGCGTCTGCGTGCGGCGGAGCACCGAACCCTCCAGCGCTCCTCTGAGCTCAACGCCATCCTCGAGCAGTTCAGACGGGCCATCGCAGAGACCAATGGCAGCAAAGACGCTCTCTCCAACTTTTCAGTTTCCATGGTGATGGGCATCCCCACAGTGAAGCGGAAAGTAAAGTCATACCTGTCAGAGACACTTCATTCACTCATCGATAAACTCTCAGCGGAGGAGAAGCTCGACTGCGTTATCATAGTGTTCGTGGGAGAGacagacatagatTATGTAAACAGCGTGGTTGCAGGCCTTGAAAAGGAGTTCTACACAGAGCTGAATTCTGGGTTATTGGAGGTCATATCTCCCCCGGCCAGCTACTATCCAGATTTGAGCAACTTGAAAGAGACCTTTGGGGACTCGAAGGAGAGGGTGAAATGGAGGACCAAGCAGAACTTGGACTATTCCTTTCTAATGATGTATGCTGTGAACAAAGGGGTCTATTATGTCCAGTTAGAGGACGACATTGTTGCCAAGCCCAACTATTTTGCCACCATGAAAAACTTTGCCCTACAACTTGCCACTGAGGACTGGATGATCCTTGAGTTTTCACAGCTGGGCTTCATTGGCAAGATGTTCCAAGCCCCAGATCTAAATCTCATTGTGGAGTTTATCTTCATGTTTTATAAAGAGAAGCCCATTGATTGGCTGCTGGATCACATTCTCTGGGTCAAAGTATGCAACCCAGAGAAAGATGCTAAACACTGTGAGAGACAGAAGTCGAGTCTGCGCATTCGTTTTAGGCCCTCTTTGTTTCAGCACGTGGGCCTGCACTCCTCCCTCGCTGGGAAAATCCAGAAACTCACGGATAAAGACTTCCTGAAACCTCTGCTGCATAAGATTCACGTGAACCCGCCGGCGGAGGTGTCCACCTCTCTGAAAGTGTATCAAGGTCATACACTTGAGAAGACCTACATGGGAGAGGACTTCTTCTGGGCCATTACTCCAATGGCTGGAGACTACGTCCTGTTCAAGTTTGATCGGCCCGTCAACATAGAAAGGTTCCTCTTTCGCAGCGGAAACCAGGAGCACCCAGGAGACAAAATCGAGAACACTACTGTCGAGATCCTGCCATTTTcgGACACCGAAATGAAGACCAAAGAGAAATACAAGCGAACAGAGGACCGCTTTTATAAACTTGCTCATTTTGAGAAAGGAGTGGCAGAGGGCACGGTTGACCCTGCCTTTAACCCCGTGGTGGCTGTTCGTCTGTCGGTCCAGAAGGACTCTGCCGTGTGGGCAATTATTAGCGAGATTCATATCAAGAGGATACCCGGGTAACTGCTGAATGTCTCCCTCTGGTCACCAAGACAAGGACGTGCTGCTCGCATCTACGGAGGATCAAGAGTGATCCTCTACATTATCAGAGTGCGTGAAGGAACCCTGGCTTTTTGTTCTTCACCTCTTAAACTTTACTTTTCCCCCTTTTCTTGTCATTTTGTCTTCCTCTGCTGTTTTCATCGATTTCTCTTCTACTCGCCTTTGCCTGTCGGCAGACTTGTTTTACCTTTTACTGTTCCCTGAATTCTGTTGCGTGAATGTGACTACTACTGTACAGGAAAAAAAGAACTCTTTTTGACAGAATGACACACAATTTGTGCCGTGAAGAATTGCAATCATCGCTGTCATTAAGGTTTGAAGTTCAGGACTCAAGGCTGCACCAATGCTGGAGAACAAGTCCCCTACTGATGAAGAATGTCCTCAGCGCTCTGCCGTCACGGACCGTAACTGGCCCTGGGTCGGACAAACACGGCTGGGTTTCGGCCGAGGGATAAACGAGCGGGACGACAGACgtttttggaggttttttttaacactgttttaGTTAGGTTTTAGGCCATTGATGTTTCAAACTCTTTTAAGAACTTTTCAAgacagtttattattttattgactgCTTTGccaaaatctaaaaacatatttctgaaaaaCGAGCAGCATATCTTCGGGCCTCTACCTGGTCAACAGAAGTGGCTTTTCTTCCTCTGTGTTGGTTTAGTGTCAACAAATCAATCATGGCTTTCAATCTGAAggtttttaattgctgttgttgttattattatgacgATCTATGAAggtgaatttaatttatttgaaataaatctttaatttgtacaaaaggtaaatgcttttattttatattctttggAAGTGTATGATGTGGCAGAGAATTTATTGTGGCTTAAAGTGGAGTGATGGTTGATGTTAGTATGTTCGTGTGGTTGAGACGGGTACAGGGCCGCCCACTTCTGTGCCTTAACATCCAGCTTCCCAGTCGGGGGCCTGGGAAAGGACAGCCTTGCGCCCTGTGTCTAAACGCTTAAATCACCAATAGGACAGTTTGTTAGTTGTTCGATTTAAGCGAGACGTTCAAGTGTAGAGCATGGcatgtccattttttttttaatgttcccGAGTCTTTCatgtcttcattttttttcattgagcaTTTCCATCTCGAATGATCCGCTTTTATCATGTCAGTCAAGAAAATGTTCTCCTTTCTATGCTGTATCACAAGTATCTGAATGTTCAGTGAGTCATGATTAAGTCCAGATGGAAtctgctgaattttttttttttttttgttgattcttctgcagaattaatttaaatgtggtGAAAAGATTAATGAAGCCGAGGGTGCTACAGTTTAACGTTAGCTGAAAGCACGTCCTACTGAGTGCCTAAAGAGACAAAATGAGGGAAACAAAAGGAGTTGATTTGTCAGGGCATTGAAAAATTAGCGGTTCTCTCAGAGTTTTTGCGTTCCACCAAGAAACTGCATTCTTTCAGAAATGTCTTGTTCACTgacacatacagttttttttttagcaaaataaataaatggtaaaaaagcCAAACAATTTTCTCGCCCTGAAAATAGCTAAATAAGCTGGCTTGGcattaatcacatacaaactTTGTGTTTGCTCGCGGTACGTTTGTGATGGGAATATAAGGTAGGGCCAAGAACTTGAGACCGCAGAGTAGTTTTGCTAGAGAGcgaaaacatttttgcaagcAAATGCAAAGTTTCTTCGAGGAAATGCggcattatttattatcacaAAAGATTGCGAGCAAGCGCAAATATTACTTGGAGGACGTATACATTTTTGCGATGTAAAGTGTAGTACTTTTGCGCGAAAGCGTTGAATTTTAGCGAACGGTGCAATGCTTGTTTTGCAAGCGACTAAGTGTTTCTTGAGGTAACGCAAAGCTTTTGCAGTTGGCTCACAGAaagtttgtgattttaaaatatgaggCGTGGGAAAGAACCGTTTAATTTCGCGAGGTTTCTTGGTGAAACGAATTTGAAGTGAACACTGAAGGTTACAAACTAATGTTTTCCCTCACCTTGTCTACTTAGGAATTCGGTAACAATCAAATACAAGCTGCAAAAACGCATAGAACTTAACGAACGACTGCAGTTCAAAGGTTTCTGTAGAGTGCTGCTGGTGCAGATTCTATGTGGACCTGGTCAGGAGCTAAATAGGACCAGAACCATAGATTTCTAATGGAAAGTGAATGGACCAGCTATTTTCAGAAGTGTTAAGTGTTCTGGTTTTGGCGCCTGGATTTATTACactgtacatttattatactgtaAAGCTACGGTtcgtgtttgtttttgcttgtagCCAGACGTAGGGACTCGATGGTGACCTAACTGCTGTACAGATTTCCGAAGTGCTCTCATCTCATGTGATTGTATGTATCTGAAAGCTTTGGTTCGGTCTGTCATTGTATAATCCTTGATGCTTCAAGTTTCCGAACATATCCTCTTTTTTAGACACACAGACCCTCATTTATTGACTGCTTGGAGCCGGACGCGAATCGCGGTGTGCATTTTGTAATAGAAAGTCAATGTACTGTCAAGCATTTGTTTACGGTTTGTTTATGATCTCTTCTGAAAGGAGAGACGGAGATAAATCTTTGGTTTGAGTTTAGAGCACTGTAACGCCATTCTCCTTTACGACATGACTTCTGGAGAGTGGACTAGTGAAACCACAGCGGAGTGGTTCTGGTAGTGTTTTGCCATATTGCTGCCTTTTCGGTCAGATTTGTGCTCGATGATCTGTTTCCACGTCTGTTTTAGCACTGAGAGACGGACTGTTGTCCGTTGCCCTCTCTTTAAACTCTCATGGGCCGGTTTTCCATCAGCGCATGTCCATCGTGAAATCCACCCTTCGGTCTCGCATTGAGATGAATCAGACATGAAACATGCTCCTCTTGTGGGGTGCGTGCCAGACTTTCATGTGCCTTCATCTGTCTTTCTCCAGCTCTGACACTGATTTGAATAAACTGTTCCAAAATAAACCAGTCTTGACATAATTCATCATTTTACGTTTCTGCTGCGTTCCCTCattgctcatttatttaactTGCATATTTAGCCGTGCAACTGCGAGAAACGTTTTCATGTTTTGAGGAGGTATGTTGTCATGTTAATAAGAGTGTTGTATGCATGAATTATGCTATTTTAGGACCTAAGCAATATTTTCAAGAAAAGAATAGGCCTAAATTAGGATTTAACaaactaataatatttattgtacatatttgtcagtactaataaaatgaatgcattttaaatacacaataaccaggtttata

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101108 lncRNA downstream 1025 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA downstream 1025 7146440 ~ 7153954 (-) False LOC122351350
XR_006251860.1 lncRNA downstream 119618 6982678 ~ 7035361 (-) True LOC122352164
XR_006251826.1 lncRNA downstream 259582 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 272003 6882585 ~ 6882976 (-) True G68357
TU101258 lncRNA upstream 133318 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 186779 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 620738 7815249 ~ 7818832 (-) True G68555
TU101355 lncRNA upstream 625497 7820008 ~ 7821889 (-) True G68554
XR_006251831.1 lncRNA upstream 1276352 8470863 ~ 8474578 (-) True LOC122352023
XM_043248373.1 mRNA downstream 6348 7147155 ~ 7148631 (-) False LOC122351350
XM_043248360.1 mRNA downstream 37502 7106559 ~ 7117477 (-) True slc9a2
XM_043248370.1 mRNA downstream 57187 7093903 ~ 7097792 (-) True tmem182a
XM_043249731.1 mRNA downstream 164211 6987723 ~ 6990768 (-) True pou3f3a
XM_043249730.1 mRNA downstream 164212 6987723 ~ 6990767 (-) False pou3f3a
XM_043248369.1 mRNA upstream 1604 7196115 ~ 7200021 (-) True creg2
XM_043248352.1 mRNA upstream 5759 7200270 ~ 7214956 (-) False cracdla
XM_043248348.1 mRNA upstream 5759 7200270 ~ 7214924 (-) False cracdla
XM_043248351.1 mRNA upstream 5759 7200270 ~ 7214877 (-) False cracdla
XM_043248353.1 mRNA upstream 5759 7200270 ~ 7211812 (-) False cracdla
TU101110 other downstream 6359 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 893910 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1055096 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1111054 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1232159 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 819938 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 884625 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1146432 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2713677 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 3238996 10433507 ~ 10441872 (-) False trim13

Expression Profile