RNA id: XM_043248363.1


Basic Information

Item Value
RNA id XM_043248363.1
length 2227
RNA type mRNA
GC content 0.47
exon number 6
gene id mfsd9
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7100429 ~ 7106362 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGTAATTTCCAGGAGGATGTTTCTCTCGCAAGACAAGTCGCGCCGCTTTTAAAGAGACAGATGGTCTAAACCTCGAGCCGTCTCGCGGAGAACAACATAGCAACGCCGTCGGCCGCTTCCGCATTGAATGCACTAGTCTCCGTCAATGCGGGAGAATGAATAACTCTAAATGCGCCATTGACCACAAACGACGGAGACCGACGCGGATCATACGATGCATCTACGTGGTGGGGTTCATGgacCTCTTTGGGGTCAGTATGATCATCCCTTTGCTGAGTCATCATGTGAAGTCGCTAGGAGCAAGTCCTACAGTAGCTGGGATTGTAGGATCTACATATGGAGTATTACAACTCTTCTCTAGTACTGTGGTGGGAAGTTGGAGTGATGTGGTAGGGAGACGTCATTCACTACTGACGTGCCTTTTGCTCAGTGCCTTTGGATATGGCCTGCTGGGTCTGTCCACCAGTATTGCACTCTTCGTGCTGGCCAGGATACCAGTGGGGCTCTTTAAACACTCCCTGTCTATCTGCCGAGCGCTCCTGTCAGATCTTGTGTCGGAGAAAGACCGGCCTCTAGTGATGGGCCACTTTAATGCAGCCTCAAGCGTGGGATTCATCCTGGGACCCGTGGTGGGTGGATATCTCACTGAACATGAGGGCGGTTTTTACATGTCCTCATTCGTCTGTGCCGCCATTTTCATTCTGAATGCAGGTTTGGTCTGGCTGTTACCTTGGAGTGAGACGCTAAATCACCGTATCGATGCAAACGCTAACAGTAAAACCAAACCCAGCAAATCCTACGATGAGTTGAAGAACTCAGTCCAGCAGAACTGCTCTGACAAAAACCACCATGCTAATGCATCAGCAGTCCACAGTCAAACGAACGGAGGCTGGGGCTGGAGGGACATGTCGGTCGTCTGGAGACAGCTGACCTCGGTGTGGATACGGATCCGCATGGTGGCGTCCTCCGATATGTGGGACGTGTTCCTGGTGCGTCTTCTGATGGCCGTCTCCATAATGCTGTACTACAGTAACTTCTCCTTAGCCATGGAGGAGCGTTTTCAACTCAAACCCAAGGTGACCGGTTATTTGATCAGCTACAGCAGTATGTTGGGGGCCCTTGCTGGCTGTTTGGTGGGACCCGTCACACACCTCTACGGCAACAACATGTCTGCTTTGTTGTTACACTCCACCGCCCTCACTTGCACGCTGATCTTCCTGTATGCCACGGCGCCGAACGTCTGGCAGGTCCTGCTCACTTCCACGTTCTTTGCCATCTCTACCACTATCGGACGCACTTGCATCACAGACTTAGAGCTGCAGCGTCGGGGAGCCCAAGCTAGCGGGACGTTAATCGGAGCGGGACAGTCGGTCACCGCTGTGGGACGGGTCCTAGCTCCACTGCTGTCTGGTCTGGCTCAAGAAGTCAGCCCCTGTGGACCTCCTAGTTTGGGCGTTGTGCTGGGACTGCTAGCTGTGGGGGTGCTATTCATGAGGACTCCTAAATGGGACAGTAAGACAAAGGTTAAAGACAAGAGTCCCAAACAATGAGGTGAAAACCACTCGGAGTGACAAAAGACGAAAGATTGTGGTGgcagctgtctttttttttttttcctctcaggtGATGTGGTGAATTTTTGGGAGAATGTGGGGGTTTGGATCTTTATAACGGCTACTAAATGTGAGACGCCCATCTGTAAAATGAAAGAGAGCAACCGCCTGTGCAAATGCAGACTTTACGGAGTCTGATGCAAAGTCTAGTGAGATGAATGTTCATATCAGAACATTTTGCTGTTACAGTGGCAGAACTATCACCAGAAGTGGGACATTCATTGTTGAGatacttttatttgttgtattaaaGTGTTCTGTATGTTGATTTTATGTTTACTGGCCAAATTCCGACTATATAAGTCACATAAACAAGAAAGGTAAGGCTGATGTGCTTCCAAGAAAACTGTTTAACATTTTGGGCAGGAGGAATGTAACTATGCGATTGAGTTTTTACCTCACTGTGGCATTGATATTTCTTTAACCACTATTTATCATTGGTGCACTTCATAATACTGACTTCACACAGTTGCCCCAAATGCTAGCaataatgtttttgataaaactgtaaaaaaaagcaaaaaaacaaacactactGTTCGAAATCaagtttggagtcagtaagattttatttatttattttttaaaaaagtatatttattattatattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101024 lncRNA upstream 104573 6991833 ~ 6995856 (+) True G68309
TU101019 lncRNA upstream 125728 6963155 ~ 6974701 (+) True G68304
TU101009 lncRNA upstream 157108 6907738 ~ 6943321 (+) True G68296
TU100960 lncRNA upstream 392236 6707841 ~ 6708193 (+) True G68254
TU100958 lncRNA upstream 405518 6694678 ~ 6694911 (+) True G68252
TU101167 lncRNA downstream 92907 7199269 ~ 7199817 (+) True G68405
TU101162 lncRNA downstream 150318 7256680 ~ 7259394 (+) True G68401
TU101189 lncRNA downstream 156179 7262541 ~ 7263713 (+) True G68424
TU101158 lncRNA downstream 174405 7280767 ~ 7298285 (+) True G68397
TU101154 lncRNA downstream 191671 7298033 ~ 7301495 (+) False G68397
XM_043249412.1 mRNA upstream 136383 6956521 ~ 6964046 (+) False fhl2a
XM_043249413.1 mRNA upstream 136383 6957997 ~ 6964046 (+) True fhl2a
XM_043249411.1 mRNA upstream 136383 6958000 ~ 6964046 (+) False fhl2a
XM_043248631.1 mRNA upstream 220401 6842578 ~ 6880028 (+) True uxs1
XM_043248733.1 mRNA upstream 287407 6763869 ~ 6813022 (+) True st6gal2a
XM_043248355.1 mRNA downstream 11184 7117546 ~ 7142648 (+) True inpp4aa
XM_043248356.1 mRNA downstream 11184 7117546 ~ 7142648 (+) False inpp4aa
XM_043248357.1 mRNA downstream 11186 7117548 ~ 7142648 (+) False inpp4aa
XM_043248358.1 mRNA downstream 11187 7117549 ~ 7142648 (+) False inpp4aa
XM_043248364.1 mRNA downstream 36757 7143119 ~ 7153966 (+) True LOC122351345
TU100736 other upstream 1135549 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1214676 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1642900 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1643166 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1643586 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 1234936 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1324783 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1758287 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 2036230 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 2036230 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile