RNA id: XM_043248364.1


Basic Information

Item Value
RNA id XM_043248364.1
length 1765
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC122351345
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7143119 ~ 7153966 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattgTCGAAGAACCGGTTCAAAAATATTCAGCGTTTATTCGATCTTACCGtcttaattgaataaaaaaagttaccGTTTATCATAATTTCGACTTATCAAGTCCGCTCTGGCCTTTTCAGTTCTCCGTTGTCCTGTTTGCACGCTTCGAACCGTGAATCTTTTGTGAAGACTTTCGTGACTCGTTAAGAAAATCTGTTTCAAACGAACGAGATACACTAATGCACACAACAATATAACGAATCTTAAGTGATCGAGTTAAAAAGAAAtcgttaatattaaaataagcttTATTATTTCGACCCAACGGGCAAGAAACATCCACACCGCAATCCGTTTGATATTTCTATGCTACAGGATCGGTGGACTACTCGGAGTGCATGCACGCTTTTCGTGCATATGTTCTCTTTCGGTTTACATGTACTTTCAGAGGAGTGTATAGAAGACTACAGGCTGGAGGATTAACCCAGAGTCGCTCCAAAGGTCCTCCTACAGATACACAGAGACCAAAAGCTCGCGACTGCAGCACCAGCTTTCAAGAAACCCACACGAACGACCAGAGACACTTAACAACAGGGGCCAGCATGAAGAAACTTCTCGTGGACGTGGACTGTGGTGTGGATGATGCTCAGGCTATCATGATGGCTTTGGCAGCGCCTGGTGTGAAGATCCTGGGCATCACCTGCGTTCAGGGAAACACCTCAATAGACAACGTCTGCAAGAACGTCCTGCGTGTCTTGAAAGTGTGTAAGCGTCTGGAGATCCCTGTATTCCGTGGAGCGACCAAAGCGCTCTTGGGACAGATCATCAGTGCCGGAGAGTTTCATGGCAAAGATGGACTGGGGGACGCCCCGGACCCCGACGCTCCTGGTTTGGATCTGCTCCAGAAAGAGGGCGCCGTGTCAGCCATGATCCGAATAGCCAACGAGAACCCTGGAGAGGTGTCTTTAGTGGCCACTGCTCCGCTGACAAATGTGGCTTTGGCTGTGAAACTTGACCCCACCTTTCCACAGAAACTCAAAGGCCTTTACATTATGGGTGGAAATACAGACTCTCGTGGGAACACAACTGTATGTGGAGAGTACAACTTCGCAGCTGATCCTGAAGCAGCATATATAGTTCTGAATGAATTCACTTGCCCAGTTTACATTGCCACCTGGGAGTTCACGTGTCGCAGCAAGATACCCTGGgagttCTGTGATGGCTGGCTGGCTCAGGACACGGATAAAGCTCGGTTTATGAAGCTGATCTTTAAGCACAGCATGGAGTCCACCTACAGCGAGAGGATCGAGAAGGAGCTCGTGGACGGGCAGGGATTCATCTCCTGCGATTCTTACGCCATGGCAGCAGCCGTAGACGAGGCGTATATCATTGAAACCGACCTCAAACCCGTCACCGTCGAGCTGGCGGGGAACTACTGCCGGGGAATGATGGTTGTAGATCACCTCGACATCCTGAAGAAGACTCACAAAGCCCACATCCTGAAGAAGGTGGACTTGGAGAGATTTAAAGAGCTCATGATGAATGCTTTGAAATAAACCGTCATCCGTAGCCGTGTCTGGAATTagcttactgtatttttttttatgaacatcTTTGTGGAAATTTACTACAATCTGATAAAATCATAAAGCCATTTATACAGAACTGTTACATGTTGAAAAATGAAAGAgcatttattatacagtaaagacattgtttTACAGCCAAGTGCACACGCTAACAAGTCTGACAGAGCTATAAATAAagtcaatataataaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101024 lncRNA upstream 147263 6991833 ~ 6995856 (+) True G68309
TU101019 lncRNA upstream 168418 6963155 ~ 6974701 (+) True G68304
TU101009 lncRNA upstream 199798 6907738 ~ 6943321 (+) True G68296
TU100960 lncRNA upstream 434926 6707841 ~ 6708193 (+) True G68254
TU100958 lncRNA upstream 448208 6694678 ~ 6694911 (+) True G68252
TU101167 lncRNA downstream 45303 7199269 ~ 7199817 (+) True G68405
TU101162 lncRNA downstream 102714 7256680 ~ 7259394 (+) True G68401
TU101189 lncRNA downstream 108575 7262541 ~ 7263713 (+) True G68424
TU101158 lncRNA downstream 126801 7280767 ~ 7298285 (+) True G68397
TU101154 lncRNA downstream 144067 7298033 ~ 7301495 (+) False G68397
XM_043248355.1 mRNA upstream 471 7117546 ~ 7142648 (+) True inpp4aa
XM_043248356.1 mRNA upstream 471 7117546 ~ 7142648 (+) False inpp4aa
XM_043248357.1 mRNA upstream 471 7117548 ~ 7142648 (+) False inpp4aa
XM_043248358.1 mRNA upstream 471 7117549 ~ 7142648 (+) False inpp4aa
XM_043248363.1 mRNA upstream 36757 7100429 ~ 7106362 (+) True mfsd9
XM_043249572.1 mRNA downstream 87370 7241336 ~ 7247598 (+) True ihha
XM_043249056.1 mRNA downstream 117396 7271362 ~ 7291542 (+) True tmem198a
XM_043249055.1 mRNA downstream 117396 7271362 ~ 7291542 (+) False tmem198a
XM_043248154.1 mRNA downstream 150874 7304840 ~ 7328592 (+) True ptprna
XM_043248155.1 mRNA downstream 153998 7307964 ~ 7328592 (+) False ptprna
TU100736 other upstream 1178239 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1257366 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1685590 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1685856 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1686276 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 1187332 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1277179 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1710683 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 1988626 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 1988626 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile