RNA id: XM_043248371.1


Basic Information

Item Value
RNA id XM_043248371.1
length 1441
RNA type mRNA
GC content 0.44
exon number 7
gene id mitd1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7215013 ~ 7218008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAAAACATACAGCaagtgtttgatttaaaaacagcttaCTTTCGCTCCAAAACTTGTATTCGCCTTCGAGGACAATTGACAAGCCACCGTATGATTAATTTTAAGTACGTAAATACGCCTTCATTGATTTAGTGTTACTTTGGATTACGAAAGCTCTCCAAATCCAAGTAGTTTAAGGTTTGTTTTCCCGGATGGATGGTGGTGACAGCGGCGTGCCTCTCATAACAACTTCCCCCGTTTTGAAAGAGCTTTAAGTACAGAACTATATTACACAATAAAACAGCGTGCATGTAACTAGTCGTAGAAGTAGTCTGCTGCTTCTGTCACAGTAACCCGCCATGGCTCAGGATTTCCTCCCAGGCATGGAGAGCTCCGCTATCTCTGTCCTAAAGAGAGCCGTGGAGCTGGATCACACCTCACGCTTTCAGGAGGCTCTGGTGTGCTACCAGGAAGGGATCCAGCTCCTCCTGGATGTACTGAAAGCTGTAAAAGATGATTCAAAGAAGGTCCACTACAGGGAGAAGATCAAGGGCTACATGGACCGGGCAGAGCAGATCAAGGACCATGTGAACAAACTGAAAGAAGAGGGGAAATACCATGAGCAGATAAAGATAGCTGACAGCTCCACTGGTTTCAGCTACGAATCCCTCTTCAGACCCTACATCAGAGACGGCCTGACTGAAGTCTGGGTGGAGGACCCTTACGTACGGCATATCCATCAGCTGTATAACTTCCTTCGTTTCTGTGAAATGCTGCTGAAATGCCAGTGTAAAGTAAAGAAGATCCACCTTCTGACCTCACAGGACGAGGACAGCTCTGCTCAGCAAACCAGTGCCCTGTCAGAAATAAAGGAGTCTCTGCAGAGTCAAAATGTCTGTCTGGACATTCAGTACTCGTCTACTATTCATGACAGGGAGATCAGGTTTAATAATGGTTGGATCGTTAAGATCGGCAGGGGACTTGATTATTTCAAGAAACCAAAGggtCGCTTCTCTGTGGGGTACTGTGATTACGATCTGAGAGAGTGTCACGAGACTACTGTGGacatttttcacacaaaacacactaaGAAGACATAGTCTTCCTTCGAAAGCTTCTCCGCTGCCTTGCATATCAATGGGACTTAATTTTGAATGCAATCCTCACATATCCAGTCATTTCCGGGGGAGGAAGACCGGAAATGATCCCAGCTTTGACATAAAATCGAGTGATTTTACCGCCTCTTTTAAAACGTTCAGATGCgagttattattatagtaactGCTACCACGGTTTTACTTCTAttgttctatatatttttaaaaatttgtatgcactagtatatgtatttatgataTGTTTACGTCTTTTCATTATATCAAAACCCGAAGTGCAATGCGCAAAAGGTAGCAGGCCTGTAAAACGCTAATAAGTGCCCTTAATAAAGAGGTTCGTGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101108 lncRNA downstream 61059 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA downstream 61059 7146440 ~ 7153954 (-) False LOC122351350
XR_006251860.1 lncRNA downstream 179652 6982678 ~ 7035361 (-) True LOC122352164
XR_006251826.1 lncRNA downstream 319616 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 332037 6882585 ~ 6882976 (-) True G68357
TU101258 lncRNA upstream 109821 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 163282 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 597241 7815249 ~ 7818832 (-) True G68555
TU101355 lncRNA upstream 602000 7820008 ~ 7821889 (-) True G68554
XR_006251831.1 lncRNA upstream 1252855 8470863 ~ 8474578 (-) True LOC122352023
XM_043248352.1 mRNA downstream 57 7200270 ~ 7214956 (-) False cracdla
XM_043248348.1 mRNA downstream 89 7200270 ~ 7214924 (-) False cracdla
XM_043248351.1 mRNA downstream 136 7200270 ~ 7214877 (-) False cracdla
XM_043248353.1 mRNA downstream 3201 7200270 ~ 7211812 (-) False cracdla
XM_043248347.1 mRNA downstream 3206 7200270 ~ 7211807 (-) False cracdla
XM_043249467.1 mRNA upstream 30011 7248019 ~ 7256613 (-) True slc23a3
XM_043249469.1 mRNA upstream 41186 7259194 ~ 7268300 (-) False LOC122352006
XM_043249470.1 mRNA upstream 41186 7259194 ~ 7268300 (-) False LOC122352006
XM_043249468.1 mRNA upstream 41186 7259194 ~ 7268300 (-) True LOC122352006
XM_043249053.1 mRNA upstream 77570 7295578 ~ 7301529 (-) True desma
TU101110 other downstream 66393 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 953944 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1115130 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1171088 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1292193 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 796441 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 861128 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1122935 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2690180 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 3215499 10433507 ~ 10441872 (-) False trim13

Expression Profile