RNA id: XM_043248378.1


Basic Information

Item Value
RNA id XM_043248378.1
length 5059
RNA type mRNA
GC content 0.45
exon number 9
gene id znf142
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18642470 ~ 18649055 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGAATGGTGTTTCACATTAACAGTTCCGTTTTTGAATGTTTTCGACGCAGTCGCGTTATTTATTCTCATAAATGTCTGTggattttgtgtattttaaaatgggtTATTCTCAACtatatattactaaattatGTGATGCATTACTAAATTATGTGAGAATTCGTTTTCCTCTTTGAACAGAAAAATCCAAGTAATGACGCCGCTTACATTGTTTTCATCCACAAAAGTGAAGAGTTGATGCTATCTCTAACTGACTGATGTCCTGTCGAGTTTGACCCAAGCATGGACCAACAAGAGCCTGGATGTGATGCAGAACAACTCACgcaaatggaaaataatgtaGCAGATACAGCAGAAgCATCGTCTCAGTCGAAGGGGACAGATATGGCTGTGCAACCTAGAAGCAAGaaaagtgtaaccaaaaaatCGAAAGCATcaacaaaaaagggaaaaacgATTACAACTATTAGCAAAGAAAAGCCTTTAACTAAAGTGGGACATGTTGCAGAGGGCACCGAACACATGTTTCGCACCCACATCTGCTCTGAATGCAGACGCTGCTTCAAGACACGCTCACATTTGATTGAACACATGCGTATTCATTTTCCTGACCCCAGTCTCCAGTGTCCAACCTGCAAACACTACTTCACCAGCAAGAGTAAGCTACGCATCCACATGTTAAGAGAGACGGGACAGAAACTGTACCGCTGTCATCTATGTGAGTATGGAGCTGTGGAACGCAACTCTCTTCGACGACACCTTACCAGCGTGCATGGGCATCAAGAAGACGATGCTCCCAATGGAGAGCTGTTTAAGTGTCCAACTTGCCATAAGACTTTCGGTCAGAGTCAGGCATTGAAGAGCCATATGAAGTCTCACAATAAGACGCAAAACGGACAGCCGTTGCTTTGCTTCCATAAAGGCTGCTCATTTCAGTGTACAGAAAAGAAGCAGCTTCAAAAGCATGTGTTAGATGCTCACCAAATTGAGGCCGTCGAGTGCCGTCATCATGCTTGCGGCGCCTTCTTCGGGAGCCTAGAAGACATGGAGAAACATTTCCGCACACATCAGGCTTATCACTGCCCCCATTGCGACTTCTCATGCTCAAATAAGAGCCTGTTTCAGCAGCACAAAAGACAAGGACATTCAGGGAATCAAGAACTGAACTGTAGCTTCTGCCCTTTCTCAACCCTCAACCCTGTAGAGTTTGATCAACATGTTGGTCACTTTCATGCCAGTGAGAAAACACACCACTGCTCGCAGTGTAGCTTTGTAACAGCTCACAAACGAGTCCTGAAAAGGCACATGCTGATGCATACTGGTGAAAAGCCCCACAAATGTACACTATGTGACTTTAGATGTCGGGATGAGACATACCTTTCAAAGCACATGCTTACACACTCTAATGACAAACAGCACATGTGCTCAGAATGCGGATATGTTACAAAATGGAAGCACTACCTGAGTGTACACATGCGTAAACACGCAGGAGATCTAAGgTACAAATGTAATCAGTGTCCATATCGCTGCCATCGCATCGACCAGCTGAACAGCCATAAACTCCGTCACCAGGAAAAATCCTTAATCTGTGAGGTGTGTGCATACTCCTGCAAGAGAAAGACTGAACTGCGCAGCCATATGCAGCTCAAGCACTCCACAAATGCAGATGCACAACCTCCTGTTTACCAGTGCAAGTTTTGCCCTTACACAACAAAGTACCGGCAAGCCCTGCATAGCCACGAGAACTGCAGGCACACCAGAACACGCATGTTCCGCTGCGCGCTCTGCCTCTACACCACATTTAGCAACACCAGCCTGTTCCTGCACAAAAAGAAATCCCATGGATATGTGCCTGGAGATGTGGGATGGCTTGAGAAAtatgcagagaaagaaaaagagcaaagctCTGCGGATTTGACGcacaactttttttcaaaaaacacttcaaatTCAGAATATAGAGAAGAAACGGTTAATACAAAGGAGTCTAATAGGACTGTAGATGATTCAATAGACATGTCTGTAAACGATCATGAGAATGAAGCAATAGCAGCCACTATAGGAGGACCTGAGGTAATTAGTACACAAACTTTAGTACAGCCTAGTCTTGATATCAAGTCTGCAAGAGAAAAGGCAAGTAATCTTTCTGATGGGCATCCAACTGATGAAGAACAGTGTGGCTCCCCACTTTTTGCTTCCCAAACCAGTCAGAGTAGCACACAAATGGTACTTGCAGAGACAGTAAATATACATGACACCCCATTTGATTTTGAATCGCACACACTGCATACGGTCCACCAGAACTTTCCACAACCATCAGCTGacgataatgatgatgatgataatgcaGTTTACTGTGAAGATCAAAGTGACTCTGAAGACCTGCCACTGGTGACAGAAACCGAAAGGAGCATGGAGAGTCTCCACCAGGAGAAATGTGTAGAGGCCTCAGCTTCTGAGACTCGCTTGCAAGTCATGAGAAAACAGGATAAAGACCAGGCTGAAGCACTTGTCTTAGAGGGCAGGGTGCAGATGCTTGTTGTCCAGACACTGGGCAATATGTATCAGTGTAGCCGCTGCTCCTATGTGACCAGAAAGCAGGCAGCATTAATCCGGCACTGCAAGTCATCCTGCCAGGTCATGAAGGCAGGGCTACGCTGCCAGGACTGTGGCATGCAGTTTAAACAGCAGCGCTCTTTGAACACCCACTTCCGGAAGTGCCAGTCACTGCAGAGGCGCAGAAAGAAGTTTGATCTTGCTAGCAATGTTGGTACATCAGGGAGTTGTGTTGTTAGTTCAGGGAGTGATGCATCTATACATGTACAGAGTGCGAGCCTTAAATCAGGATCCCTCACAATGCATCCTGAACCTGTTAAAGTCAGTGATTCTATAGATTCAAGAGTACAAGGTTCAGCTGAACCCGAAGGCCCACTTTTCCCTACCATAACTGCTGTAGAAAATGAGACTGAATCACTGACGAGCAGAACCAAAGAAGGACATTCAACTgtcaaaaatagaaacaaactaGCAGAAGAGGAGTTGGTAAATGTTGAGATCTCTCATACTGAAGATGATGGTAGGTATACTTGCagaaaatgtcttttctcaTCTGTTAGGAAAGTCACAATAGATCGCCATTGTGCAACATGCAGTGGAAGCACCCATAAGGTACATCTGGCTGAAACAGGAGAGCAGTTTGAGCAAGAGGATAATCCTATTGACTCAGATCATGATCAGGAGGACAATGGGGCAAATGACTCAGAAAGAGATTCGGCAGAAGAAGACAGACCTCAAGACCCCAAACCTCGATTCTCATGTCCTAAATGTCCTTTTTTCTGCCACCAAAAAAGAGCTCTAACAAGCCATCAGATAAAGGGCTGTTTAAAACCAGGTGAAATACAGTGTCCACAGTGTTCATTTGTTGCCAAATCAGAAAAATCTCTCAGCCATCATATGCTAGCTCACAAAAAAGACAAGAAGGTTACTAGAGGTAAAATGTCCAGAAACCTGCAGTGCAATCTTTGCTCCTTCACTTGCAAGCAAGAGCGTTGTCTGACACAGCATGTTGCTGTGAAGCACGAAGGAGTTCGTCCTCACCAGTGTCGCTTCTGTTCATTTAGCACAATCCGTCGGTACCGCTTGGAGGCCCATGAGTCTATGCACACAGGTGTTGGGAGGCATAGTTGTGAACTCTGTGGCCAAACTTTCGGGACCACATCAAGACTACGATTGCACCATCAACGTATTCATGACAAACAGGCAACACACTTCTGTTCACTTTGTGACTACAGAGCTTATAACCTCAATGACATCAACAGACACAACTTGAGCTGCCACTCTGGTGATCTTAGCTACCATTGTAGCCAATGCAATGCACGTTTCTGCTCTGAAGTTGCCTTGAGGCAGCACTCCAACCGAGCGCATCCAGATGCGAACAGCTTGTCTTGCACCCAGTGTAGCTTCACCTGCAGCTGCCAAGCTGCACTCAAAGCGCATATGCAGCAGGAACATTCAGAAATCAAGgcgaaaaaaacccaaaatggtACAGACAAACAAAGTAAGATATCCATTACCCATCAATGCTTGGTTTGTTCCTTCAGCACCCATAAAAAACTCCTGCTGGTCGAGCACATGTTGGATGAGCATGAAGATGGACCAGCAGAGGAGAAAACTCTGAAGTGTGATGTCTGTGGTTTCTCTTGCACCCACCAAGTGGTGTTTGACCAACATGTGCGGTCACATGGAGGAACCTGCCTCTTTAAGTGCACTGAGTGTGAGTTTTCCACCAGGAATAAACAGAAGATCACTTGGCATATTCGCATCCATACAGGAGAGAAACCTTACCGTTGTGAGAAGTGCAGTTATGCATGTGCTGATCCATCAAGACTGAAGtatcatatGAGGATTCATATGGAGGAACGAAAGTATCTCTGCCCAGAATGTGGCTACAAATGCAAATGGGTCAACCAGCTGAAGTATCACATGACAAAACATACAGGCGCTAAACCGTATGCGTGTGAGGACTGTGAGTACTGCACCAACCGTGCCGACGCACTGCGCATCCACCGGGAGACACGCCACAGAGACGTGCGTTCCTTTATATGTGAGAAATGTGGAAAGGCTTTCAAGACGCGCTTCCTTCTCAAAACGCACCAGAGAAAGCATAGTGAAGAGCGACCTTATGTGTGCTCCATATGCCAAAGGGCATTTCGCTGGCCTGCGGGCCTCCGCCATCATTACCTGTCCCACACCAACCAGCTGCCATTTTATTGCCTCCACTGTACATATCGAGCCAAACAGAAATTTCAGGTTGTGAAGCACATTCAGAGACATCACCCAGACTTGCCTGTACAAGATGGTGTGGGTAAAGACCAAGAGGCCTCTAGTATGGGTACACAAAATACCTGGATTAGGGAAGAAGAAGTAAGACAAGAAAATGCAGGGGACATGTAGCTGTTTCTGTATGCATACAATTGACATTCCATCATGTTATgaaagtattaaatataatcataaccCTAATTCAAACCACACTgaataaagatttttacaatata

Function

GO: NA

KEGG:

id description
K24851 ZNF142; zinc finger protein 142

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105581 lncRNA downstream 130942 18511173 ~ 18511528 (-) True G71341
TU105579 lncRNA downstream 132461 18508440 ~ 18510009 (-) True G71339
TU105535 lncRNA downstream 276232 18251260 ~ 18366238 (-) False sema5ba
TU105536 lncRNA downstream 377970 18251260 ~ 18264500 (-) False sema5ba
TU105518 lncRNA downstream 415683 18222314 ~ 18226787 (-) True G71293
TU105697 lncRNA upstream 4572 18653627 ~ 18654751 (-) True G71400
TU105739 lncRNA upstream 39443 18688498 ~ 18692089 (-) True G71424
TU105832 lncRNA upstream 88701 18737756 ~ 18742225 (-) True G71471
TU105862 lncRNA upstream 262788 18911843 ~ 18972902 (-) False LOC122351248
XR_006251715.1 lncRNA upstream 292461 18941516 ~ 18972902 (-) False LOC122351248
XM_043248382.1 mRNA downstream 8866 18626417 ~ 18633604 (-) False ccdc93
XM_043248381.1 mRNA downstream 8866 18626417 ~ 18633604 (-) True ccdc93
XM_043249579.1 mRNA downstream 97319 18534652 ~ 18545151 (-) False si:dkey-219c10.4
XM_043249578.1 mRNA downstream 97319 18534652 ~ 18545151 (-) True si:dkey-219c10.4
XM_043249567.1 mRNA downstream 142576 18494086 ~ 18499894 (-) True hacd2
XM_043248798.1 mRNA upstream 60173 18709228 ~ 18720447 (-) True tgfbr2l
XM_043248514.1 mRNA upstream 236389 18885444 ~ 18890055 (-) True myl1
XM_043249273.1 mRNA upstream 331223 18980278 ~ 19249175 (-) True LOC122351886
XM_043249274.1 mRNA upstream 331223 18980278 ~ 19249174 (-) False LOC122351886
XM_043249176.1 mRNA upstream 610674 19259729 ~ 19285223 (-) False ikzf2
XR_006251863.1 other downstream 72588 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 1386979 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 1818695 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 1818776 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 2870606 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 1071443 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 1147202 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 1232769 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 1840109 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 1840109 20489164 ~ 20503890 (-) True G71938

Expression Profile