RNA id: XM_043248380.1


Basic Information

Item Value
RNA id XM_043248380.1
length 3242
RNA type mRNA
GC content 0.41
exon number 14
gene id ddx18
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18620886 ~ 18626414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCGAAGGACCCCACGCAGCACGCGCACACGTGTTTGTCTGCAGCCATGGCGGACATGCAGATGAAGATTCTCCGCAAGAAAATTCAGAagagaaatgataaaaataagcaaCGCAAGTTGCTCAGAGCtcagaaagaagaagaggaaaacgGCGAAgAGGTAAAAGTTGTGTTGGGCGAATCTGAAGTGACCAGTGATTCTGCTCCAAACGTCAGTGAAGAGCAGCAGGAAAGTATCTCCACAGAGGAGAACGAAACCTCACAGAAAactaagaaaaagaaaagaaaattggaTGGTGCAGGGGACGCAAAATCTAGTGTGAAAAAGGTCAAAAAGCAGGATGAAGTTAAAGAGACAACAGAAGCATCAGATGGAGAAGATGAGAAACAGGAGGAAGCTGCAGAGCCTGAAAAGTTGCCAGAAAATGGAAATGATGACCTAGAGGGttctgaggaggaggaggaggaggatgatgatgatgatagtgAAGACGATGGACCAGAACTTCCTTCTGGTCTCACAGGTGCGTTTGAGGACAGGTCATTTGCATCTTTGGCAGAAGTGGTCAGTGAGAATACACTGAAGGGAGTGAAGGAGATGGGCTTTGAAACCATGACTGAGATCCAGCACAAGACCATAAGACCTCTGCTAGAAGGAAGAGACGTGTTGGCTGCAGCTAAAACAGGAAGTGGTAAAACTCTGGCTTTTCTGATTCCCTCCATTGAGCTTATCTACAAACTCAAATTTATGCCCAGAAATGgAACTGGAGTGGTCGTATTGTCTCCCACTCGTGAGCTGGCCATGCAGACGTATGGTGTTCTAAAGGAGCTGATGACTTACCATGTGCACACATACGGCCTCATCATGGGTGGCAGCAACCGTTCTGCTGAAGCTCAGAAACTCGGCAATGGTGTCAATATTGTGATAGCTACACCTGGCAGACTTCTCGATCACCTGCACAACACACCCGGGTTCATGTTTAAGAACCTTCAGTGTCTGATCATTGACGAGGCTGATAGGATTCTAGAGGTTGGCTTTGAGGAAGAACTGAAGCAGATCATCAAACTGCTGCCTAaaaaaagacAGACCATGCTGTTCTCCGCAACACAGACGCGTAAGGTGGAGGATCTTGCGCGAATCTCCCTCAAAAAGGAGCCGCTGTATGTGGGGGTGGACGACAACAAAGACACAGCCACCGTGGAAGGACTAGAACAGGGATATGTCGTTTGTTCTTCTGAAAAACGTTTCCTGCTGCTCTTCACGTTTCTGAAGAAGAACCGCAAGAAGAAGCTGATGGTGTTCTTCTCGTCTTGCATGTCTGTGAAATACCATTATGAGCTGCTCAATTACATCGATCTGCCTGTCATGGCTATTCACGGGAAACAGAAACAGACGAAGAGAACCACAACGTTTTTCCAGTTCTGTAACGCAGACTCTGGCATTCTCCTCTGTACGGATGTGGCTGCCCGAGGTCTTGATATCCCAGAGGTGGACTGGATTGTTCAGTATGACCCACCCGATGATCCAAAGGAGTACATCCACCGCGTGGGACGAACAGCTCGTGGTATTAATGGTAGAGGACATGCCCTCCTGATCCTAAGACCAGAGGAGCTTGGCTTTTTACGATTTCTCAAACAGGCAAAAGTCCCTCTGAGTGAGTTTGAATTCTCCTGGGCTAAAATCTCTGATATTCAATCTCAGTTGGAGAAGCTGATAGAGAAGAACTACTACCTTCACAAATCGGCTCAGGAGGCCTACAAATCCTACGTCAGAGCTTATGACTCGCATTCCCTCAAACAAATCTATAATGTAGAAACGCTCGACCTCCCGAAAGTGGCATCGTCCTTTGGGTTTAAAGTGCCACCTTTTGTGGACCTCAACGTTCACAGCAGTAAAGGGGTGAAGCTGCAGAAGCGAGGTGGTGGTGGAGGCTTTGGCTACCAGAAATCTAAGAACGTCCACAAGGCCAAGATCTTCAAACACGTCGATAAAAGGAAAGGAGATGGTAGACAGTTCTCACGCTGAGAATAAGTAAATATGCCTTGTGATGCACCTCTATGTGGAGTATCTGTCAGACTGCACAACTGTCATTTAGTTAATTTGTTCTCAGTCATTTGAGAAGAGCTCTGATCAGTCTGCATTCCATGCCTGTACAGAAATCTGTTTTCAGAAGTCGTTATATAATGCTGAATTTCTATTGTTACTGGCCCAACTCATTAAATTTAGAACCTTGTATTATGAATAATTCTTCATGCCGTCTGCTCTCTACACGTGAGGTTGAACCAACAACCGTAGTGGCAACCAGAGTTTGATAGATCAGacttttgattttcatttatgtattttttcaaataGACGACATTTTCCATACTGTTTTACAGAATAGAACATCTTGAGAAAGATCTTTATTTATGCAACAATGTAACAACAATGCTtgcttttaaagattaaaataaatgtaaaatgccacacaaattgtgtgtgtgggggagagagagagatgcaaaaGGAATTGACATACTAGTTAATACCCAAAGAACAATGTGTGACCCTGACCCAaaaggttaatattttttaaattgagatttataaatCATCTGAAAGCCGGGATAATactctttccattgatgtatggttttttaaaatgtggcaGAGAACCTACTTGAAATTTGGGAATTAATTATTGAGAAAATCCACcttttaaagttgtctaaattaagttcttagcaaagcatattactaatctaaaaataagttttgatatttatggtaggaaatgtacaatatcttcatggaacataatggtcacttaatatcttaatgatttttggcagtggaaaatagattattttgatacatacattgcattttttgacatttctacCAATATACCCATGTAACTTattactggttttgtggtccagggtcacattcatattacatttttatccttatttatttttattaaatcaagaaaactcaaataaaaagcagaatATTAATAGTGATGAggtttgttcattttcatttaaatgtcctATATATTGCATAGTACTATGAACTGTGTAAGGCTGCCATCTTTAAAATGTGCACAACAATTGcaaatttcagttttaatctTATTTACAGGTTGAGGCAGTCTGAACTAAAGAGTCTAAGATGGCAGGCTGTTTTTACAATTACTGTATCGCATGACCTCGCTATAATCCTCTATAGTAAATaaatctgaccaatcagca

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 76888 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 79550 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 82186 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 590338 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 978448 17641910 ~ 17642438 (+) True G71167
TU105770 lncRNA downstream 121497 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA downstream 190724 18817138 ~ 18892052 (+) False G71442
XR_006251757.1 lncRNA downstream 263509 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA downstream 267137 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 353899 18980313 ~ 18985811 (+) True G71457
XM_043249635.1 mRNA upstream 1499 18611996 ~ 18619387 (+) True tfcp2l1
XM_043249632.1 mRNA upstream 9958 18549939 ~ 18610928 (+) False clasp1a
XM_043248379.1 mRNA downstream 8694 18635108 ~ 18642486 (+) True plcd4b
XM_043249208.1 mRNA downstream 22798 18649212 ~ 18652922 (+) False LOC122351849
XM_043249207.1 mRNA downstream 22817 18649231 ~ 18652922 (+) True LOC122351849
XM_043249206.1 mRNA downstream 26657 18653071 ~ 18657710 (+) True LOC122351848
XM_043249209.1 mRNA downstream 33351 18659765 ~ 18662870 (+) True LOC122351850
XR_006251851.1 other upstream 1499 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other upstream 1499 18611996 ~ 18619387 (+) False tfcp2l1
TU105623 other upstream 68004 18550278 ~ 18552882 (+) False clasp1a
XR_006251866.1 other upstream 72279 18548481 ~ 18548607 (+) True LOC122352188
XR_006251864.1 other upstream 73604 18547160 ~ 18547282 (+) True LOC122352186
XR_006251742.1 other downstream 8692 18635106 ~ 18641180 (+) False plcd4b
XR_006251718.1 other downstream 56258 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other downstream 56258 18682672 ~ 18688223 (+) False lmln
TU105802 other downstream 275215 18901629 ~ 18907047 (+) False cps1
TU105807 other downstream 291156 18917570 ~ 18920415 (+) False cps1

Expression Profile