RNA id: XM_043248382.1


Basic Information

Item Value
RNA id XM_043248382.1
length 2263
RNA type mRNA
GC content 0.47
exon number 23
gene id ccdc93
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18626417 ~ 18633604 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTGACACATCGTGATCGGATCATCATGGCGGCCACCTCTGTGTTCCAGAGAGTGAGAACAGGCTCGAAAATAGGAGCCCAATATGATCAGGAGGGCAATCTCATCAAGGTGGAGACACGTGAGGATGAGGAGCAGAGTGTCAAGCTTGCCGAGATTTTGGAGTTGTTGCTCGCTGCTGGTTATTTCAGAGCACGCATTAAGGGACTGTCACCTTTTGACAAGGTGGTTGGAGGAATGACCTGGTGTATAACTACTTGCAACTTTGACATAGACGTTGATCTGCTTTTCCAAGAGAATTCCACCATTGGTCAAAAAATTGCTCTGACAGAGAAGATTGTGTCAGTTCTGCCCAAAATGAAGTGTCCTCACCGTTTAGAGCCTCATCAGATCCAAGGGTTGGATTTCATCCACATCTTTCCTGTTGTACAATGGCTTGTAAAGAAGGCGATTGAAACCCGGGAGGAGATGGGAGATTATGTCAGATCATATTCCATTTCTCAGTTTCAGAAAACGCATGCATTTCCTGAGGACGAGGAGTTTGAAGTAAGGAAGGAGAGAGCAATCAGTACTGTGgtgaacgtgtgtGGGGTTTATGCTCCTCAGAGGCGCTATAAACGTCAGGTGGATGCTGGAGAGCTGCTGGATGAAGAGTCTCGGGTTCATTCTACCTTGCTGGAGTTTGGCAGgcGCTATGGATTCAGCAAACAGTCCAAAGCTGGCACTGCAGTGGAGCAGAAGCAGGTGTTGGCTCAGGGCACGCAGGGTGTGCCTCCTGGAATGGCCCAGGTGTCTGAAGAGGAGGATCTGCAGGCGGCAGAAGAGCTCAGAATCAAAGCCTTAATGACTGGAAtggctgccatggcaacagagGAGgggaAGCTGTCAGCCAGCACAGTGGGGCAGATTGTTGGACTGCAGTCTGAGGAGATCAAGCAGATTGCCACTGAATATGCAGAGAAGGCGGAGCGCTCCGTGGAGGATCGGCCGGAAAGGTTTGGACCTGCGCAGCAACACAGGCGTCAACTGGCATCTCTCAACAAACAAATtactcaaaaaacaaaagagcttGAAGAGCTGCAATCCAAACAGCAGGAAGCCAGAACAGCATGTGAGGACGCTAAAATCAAACTAGCTGAGgCCACAGCTCAGACTGAAAAGCTGGAGAGAGAGCTGAACTCATTGGAGGACGTGGAGTCTCAGGCAGATTCTGGgttaCTGGAGAAGCTTCGTGCTTTGGTGGCCATGAACGAAAGCCTCAAACATCAAGAGCAAACGTTCCGCTCGCACTGTCGCGAGGAAATGACCCGTCTTCAGCAGAATATTGAAGAGTTGAAGCTGGAGTATGGAGAAGAGGGAGATGAGAAGAAGGAGATGAACATGTTGATTGATCAGCAGTACACTGCAGACAGAGAAAAGCTGCAGAAGATCCGTTTGCTTATGGCTCGGAGAAACCGTGAGATCGCAATCCTGCAGAGAAAGATTGATGAGGTTCCCAGCAGAGCTGAGCTGACCCAGTATCAGAAACGCTTTATTGAGCTGTACAGCCAAGTTTCTGCAACGCACAAAGAGACAAAACAGTTCTTCACGCTCTACAACACACTAGATGACAAGAAGGTTTACCTGGAGAAAGAGGTCAATCTGTTGAACTCCATACACGATCATTTCCAGCAagCCATGGCTTCGTCAGGAAGTAAAGAACAGTTTCTTAGACAAATGGAGCAAATTGTGGAAGGAATCAAACAGAGTCGCATAAAGatggaaaagaaaagacagGAGAATAAGATGCgcagagatcagctgaatgatGAGTACTTGGAGCTGTTGGATAAACAGAGGCTCTACTTTAAAACCGTCAAGGACTTTAAAGAGGAGTGCCGCAAGAATGAGATGCTGTTGTCTAAACTGAGGGCAAAGGGAGCGTCGTAACAGCTGGATTGGCACACACCCTGCCTTTAATACACAACTCCCAAGTAGCACTTCAAAATACTCTTCACATTCCCTGATGTTGGTGTTTCATTGCAGTACAGCCATCTTCTTTCAGATTGAAACACTCTGTTGTtcggtatgtgtgtgttaacCTGGATTCTTCTAGGTTCAGAGATGAAGCATGTAACTTGTGTAATATTAAACTGGAAATGTTTTGTGCCTTGATATCACCTTATTTAAAACCGTAATGTATATAACACAAACTCCCTTACTAATCGCCTTTGTTTTTGTATCAAGATCATGCTGCCATAAgacattaaaagacaaatgaaCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105581 lncRNA downstream 114889 18511173 ~ 18511528 (-) True G71341
TU105579 lncRNA downstream 116408 18508440 ~ 18510009 (-) True G71339
TU105535 lncRNA downstream 260179 18251260 ~ 18366238 (-) False sema5ba
TU105536 lncRNA downstream 361917 18251260 ~ 18264500 (-) False sema5ba
TU105518 lncRNA downstream 399630 18222314 ~ 18226787 (-) True G71293
TU105697 lncRNA upstream 20023 18653627 ~ 18654751 (-) True G71400
TU105739 lncRNA upstream 54894 18688498 ~ 18692089 (-) True G71424
TU105832 lncRNA upstream 104152 18737756 ~ 18742225 (-) True G71471
TU105862 lncRNA upstream 278239 18911843 ~ 18972902 (-) False LOC122351248
XR_006251715.1 lncRNA upstream 307912 18941516 ~ 18972902 (-) False LOC122351248
XM_043249579.1 mRNA downstream 81266 18534652 ~ 18545151 (-) False si:dkey-219c10.4
XM_043249578.1 mRNA downstream 81266 18534652 ~ 18545151 (-) True si:dkey-219c10.4
XM_043249567.1 mRNA downstream 126523 18494086 ~ 18499894 (-) True hacd2
XM_043249266.1 mRNA downstream 133544 18427072 ~ 18492873 (-) True adcy5
XM_043249267.1 mRNA downstream 133548 18427072 ~ 18492869 (-) False adcy5
XM_043248378.1 mRNA upstream 8866 18642470 ~ 18649055 (-) True znf142
XM_043248798.1 mRNA upstream 75624 18709228 ~ 18720447 (-) True tgfbr2l
XM_043248514.1 mRNA upstream 251840 18885444 ~ 18890055 (-) True myl1
XM_043249273.1 mRNA upstream 346674 18980278 ~ 19249175 (-) True LOC122351886
XM_043249274.1 mRNA upstream 346674 18980278 ~ 19249174 (-) False LOC122351886
XR_006251863.1 other downstream 56535 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 1370926 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 1802642 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 1802723 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 2854553 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 1086894 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 1162653 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 1248220 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 1855560 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 1855560 20489164 ~ 20503890 (-) True G71938

Expression Profile