RNA id: XM_043248388.1


Basic Information

Item Value
RNA id XM_043248388.1
length 3621
RNA type mRNA
GC content 0.42
exon number 10
gene id gtdc1
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12091131 ~ 12194961 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgttcttttatttagtattaaagttaagtattttgtttttatatggtAATGACTTGGCAAAAGGTTAGTCATTTATAATAGTATTaagcatataaaatgtatttttcatgctGCCTTTAAAGGTAGTTTGTGTAAATCTGTAGAAACTGAATCCCCCAATTTGGTTTTGTTATATGGCATCTCATTGATTGGAAGGAGTCAACTCTTACACAGGCGAGCCTTTTGAATGCAGTCGAGCAATGACTCAGCATCCATTGACAGTCATGATAGTGCTGCTTTTAGTCGATAGGTCGGGCTCTGTGGGGTTTCCCTTCTGCATATACTGTGTGGGGGTCTGAACGAGGCAACATTAACCCCTCACTTTCCTCTCCATCTTGAGGGCGATTGCTTTTCACGCCCTACCTGTGTAAAATGGAGGCACTGAGGTAAAAGGGTAGAGGTAAATCACTGTGTGAGAAAATCCCACTCAGTACATCCGAGCGATTGGAAAACCCCAGCCTTTCAGGTTAGATGCTTAAACCTACTTAAGTTGTTAAATTTCCAGTTCCCTGTCGCAAAGTTTTGATTCGTTTTCACAGTTCTGCTTGCTATAATGTGCTGTGCTCAGCAGTGTTTATCACATGGttgtttacatgaaaaaaaaaaagcatgatcaATGGCCTCCACAAGGTACCACTAAAATTCGTAgaagcaaattattattattattttgaattgtcTCGAGTGCCTTTTGAGAGCTTCAACTTTCATTTCAAGTTTCATTTCTTATTACAGTGTTTATCGAGCTAAATTTGGAATTTTTGCTACAAGCtaactacataaaaatattttataaagctatttaaaaagtaGTTAGCTACTACAAGTTGTCAACTACATTCAAGCTATGCAtaatttgcaatttatttacacaaattagATGTATTTATCTGCCACATAAACAGCAAGGGGTTTCTGAATGAATGACTCActcgcaataaaaaaaaaaacctatacaACAGTTGCAAACATAGTGATATTACGACATTGACAAGAAAACTTAAAATGTCATGTAGGAACgttgaatcttttttttgttttgttttgttgatttttttttttggtctgaatGAACCAGTTAatggtaaaatgtataaaatgaatcAGACTTAATTTAATTGGTAACGCTGCTTGCAGTTAATTTTCACCCGACTCTTTAGTAAAACAACATTCAAATTAAGGAGTAAATTTCTAAACGAtcagctgaatttttttttttgtttttttgctgcttaaatCATTATGCATTTCAGTTATGACTTAACTGTGACACATATATGATGAAATTCTATGTGATTCGGAAAGTACTGTACGTGGGTGAATTTTGCCAGTGCGATTATTATTAACACCCTCTCCAATACGTGGTTATTAATCATAGGTTATTATggtcttctttttaaaatgtgagtCATTAAATTTGgtgtgttatttgttttttgtttttttaactctaCAGTTATAGCTTGAATCACACCAAATTTCAGGTTTGGTTGGGCCTTTATCCCAATGAGTGTGCTCTTGCTGGAGGCGTTCTATGGCGGCTCCCACAAACAGCTGGTTGATCTTCTCAAGGAAAGCGTTGAAGACTGTGTAAGCTTCACTCTGCCTGCAAAGAAATGGCACTGGAGGGCCAGAACTTCTGCTCTGTACTTCATGCAAGCAGTTCCAGCAAGTTCCTTGTACAGGGTTTTGTTCACCAGCTCTGTACTCAATCTTGCTGAACTGGTAGCCTTGCGGCCTGATCTCGCCCATCTTAAGAAGGTCCTCTACTTCCATGAGAACCAGTTGGTCTATCCAGTTCGCAAGAGCCAGGAAAGAGACTTCCAATATGGCTACAACCAGATCCTCTCATGTCTGGTTGCGGATGTGGTGGCGTTCAACTCTGCATTCAACATGGAATCTTTCCTCTCCTCCATCTCTACCTTCATGAAGACCATGCCTGACCATCGACCCAAAGATCTGAACCGACTCATCCGGCCCAAGTGCCGTGTCCTTCACTTCCCGATTCGTTTTCCCGATGTCACAAGATTCCTCTCTGCACACAAACGTCTCAGGCATTCAGTGCGGTGTGATGATATCCACGCTCCGGCTACTCAAAGCCACGTTCAAACATCAGCTCCAAGTGTGTCAGGTCCGCAGCAGTCGCCGGAGCCTGTGAGTGTCACACCACGTCAGGAGACATTGCAGATTCAGCCTGTCTCTCATCCGTGTGGTGACAAGAGAGGGAATCTTCAGCCACTTCACATAGTCTGGCCACATCGCTGGGAACATGACAAAGACCCGCAGCTGTTCTTCCAGACCTTACTAAAACTCAAAGAACGACAGCTGAGCTTTGAAGTTTCTGTCCTGGGAGAGACCTTCGCTGACGTTCCAGACATCTTTTCAGAAGCCAAAGAACAGTTGGTTGACCACATCCAGCACTGGGGTTTCATGCCCAGTAAGGAAGATTACCTCAAAGCGCTGTGCCAAGCAGATGTCGTCGTTTCCACGGCCAAGCACGAGTTTTTCGGAGTAGCAATGTTAGAAGCGGTCCATTGTGGTTGTTACCCCCTGTGTCCGAAGGCTTTGGTCTATCCTGAAATAttcctgCAACATATCTGTATTCAACACCTGAACAGCTGTGTAAAAGACTACAAGACTTCTGCAAGCGTCCGCAATTAGTCAGACACCATGTTACTCAGGTGAACCTCCAAGCTTTCTCTTGGGACACTCTGGGGGACAGTTTCAGATCTCTCCTGGGAGCCGACAGTGACAGGATGTTAACAGAAGAGCACAGGTCATGACGTGACCcccaaaaaatatgttatgattTAAACTCCAGTCTCATTCGAAAAAGAGAGTTTATGACCTGGAAAATCCTCTCTACCTCACTGctattatttaagaaaaacatgtatATGTGATTTTAATGTCTTCATGCCGGAAAAAAGCAACTTTATATTTGTGGTTAATGGGGGAAAAagaacaaagtaaaaataaacaatcaaaaaacCTGAAACCGCTTTCGTGTTGCGCCTAGGCGGGCCCACCTCATATTTCGGTTCATATCCATTTTTATCCTTTGTGCCGGAGGACTCCAGCCTGGAATTCTGGAGTCTTCGGTTCCCACTCCGACAGAGCGGCAGCCAAGTTGCGGCTTGAAACGTTGTGGGCTCTCGCTCCACCTGAGGTTGCCAGGTTGTGACAAAGTCCCCCGAGGCTCAGTAAAGGTTGATGCAAGGCTTCCCCAGGACTGTGGTTGAATCTAAATATGgttcttttattttccttgcGTCAGAGATCTGGCTGTACGTTGCAACCGGGAACCCGCTGCATAATTAAGGGGGCATGGTAACTAgctatttatatgtttttgcaaaatgtaaaatctggGCAAACTAACAATGGCCTGTCAGATTTTCCATAAAGATGTAAGTGTCTGCTTTCACATCACAGCAATGCCACAATCACACGGCCCACTTCAGGCCTGCCAACATATGTGTTATTAAAAGAGGTCTGACTTTTATTGCAAGAGTTATTGAAGGATTCCTCCTTTATTATCAGACATTCTCTCAATAAAGCTGCGGACTTTCTGACGTTA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102924 lncRNA downstream 4063 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA downstream 4063 12085714 ~ 12156439 (-) True G69596
XR_006251827.1 lncRNA downstream 206268 11790781 ~ 11954234 (-) True LOC122351998
TU102798 lncRNA downstream 667382 11396676 ~ 11493120 (-) False LOC122351858
TU102742 lncRNA downstream 794683 11358950 ~ 11365819 (-) True G69467
XR_006251707.1 lncRNA upstream 78461 12268112 ~ 12270147 (-) True LOC122351183
TU102946 lncRNA upstream 90142 12279793 ~ 12280197 (-) True G69607
XR_006251738.1 lncRNA upstream 114063 12303714 ~ 12321820 (-) True LOC122351337
TU102984 lncRNA upstream 202662 12392313 ~ 12393474 (-) True G69639
TU102985 lncRNA upstream 204446 12394097 ~ 12394329 (-) True G69640
XM_043248593.1 mRNA downstream 150565 12004004 ~ 12009937 (-) True arglu1a
XM_043249140.1 mRNA downstream 159810 11982968 ~ 12000692 (-) True efnb2a
XM_043248275.1 mRNA downstream 660007 11496947 ~ 11500495 (-) True LOC122351308
XM_043249495.1 mRNA downstream 696088 11454069 ~ 11464414 (-) True LOC122352021
XM_043248236.1 mRNA downstream 756206 11400551 ~ 11404296 (-) True gtpbp8
XM_043248071.1 mRNA upstream 7103 12196754 ~ 12244788 (-) False zeb2a
XM_043248073.1 mRNA upstream 7103 12196754 ~ 12244631 (-) False zeb2a
XM_043248072.1 mRNA upstream 7103 12196754 ~ 12243624 (-) True zeb2a
XM_043248076.1 mRNA upstream 7103 12196754 ~ 12243333 (-) False zeb2a
XM_043248074.1 mRNA upstream 7103 12196754 ~ 12243333 (-) False zeb2a
TU102802 other downstream 661130 11497010 ~ 11499372 (-) False LOC122351308
XR_006251823.1 other downstream 1473875 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 1641045 10515272 ~ 10519457 (-) False fdx1
XR_006251818.1 other downstream 1718630 10433507 ~ 10441872 (-) False trim13
TU102995 other upstream 232778 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 518980 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 548393 12738044 ~ 12738171 (-) True LOC122352189
TU103179 other upstream 795473 12985124 ~ 12985978 (-) True G69757
TU103524 other upstream 1283489 13473140 ~ 13495645 (-) False gypc

Expression Profile