RNA id: XM_043248392.1


Basic Information

Item Value
RNA id XM_043248392.1
length 4220
RNA type mRNA
GC content 0.49
exon number 20
gene id xpo4
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14521398 ~ 14551453 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGTAAAGTGGACTATGTGTTGTTCCAGGCCGCCACAGCCATCATGGAGGCAGTGGTTAGAGAATGGATCCTTCtggaaaagaacagcattgagTCCCTCAGAACATTCCTTCTCACCTACGTCTTACAGAGACCCAACAAACATTGGCCTGCTCCATCCTGACAGCTCTGTTGAGTGAGTTCTCCAGCTCCAATAAGACCAGTAACATTGGCCTCAGTATGGAGTTTCACGGAAGCTGCAAACGCATCTTTCAGgagGACGATCTCAGGCAGATCTTCATGCTCACTATGGAGGTCCTGCAGGAATTCAGTCGGAGAGAGAACCTCAACGCTCAGATGTCCTGTGTTTTCCAGCGCTACCTTGCCCTGGCCAATCAAGTGCTCAGCTGGAACTTCCTTCCACCCAATCTGGGGAGGCACTACATTGCCATGTTTGAAGCGACTCAGAATGTCATGCTCAAGCCAACCGAGTCCTGGAGGGAAACACTTCTAGACCACAGAGTCATGGACCTTTTCTTCACAGTGCACAGGAAGATCAGAGAGGACTCAGACATGGCGCAGGATTCCCTTCAGTGCCTGGCCCAGCTGGCCTCTATGCATGGCCCCATCTTCCCTGATGAGAGCGCTCAGGTGACCTACCTGGCCCACCTGGTAGAGGGATTGCTCAACATGATCAACGGGATTGAGATTGAAGACTCCGAGGCTGTAGGCATCTCCAACATCATCAGTAACCTCATCAGCACATTTCCCCGAAGTGTTCTGACAGCGCTCCCGAACGAGCTCTTCGCCTCTTTCATTAACTGCCTCACATTGCTCACATGCTCGTTTGGTCGCAGCGCCGCCCTGGAGGAGGTGCTGGATAAGGATGACATGGTGTACATGGAGGCATATGATAAGCTGCTGGAATCCTGGCTGACGCTGGTGCAGGAGGATGAGCACTTCCCCCGGGGATGCTTTGTCCAGCCGGCCGTGCAGGTCTTCAACTCCTACATCCAGTGTCACCTCGCAGCTCCTGACGGCACGAGGAATCTGACTGCAAATGGTGTCGCTTCTCATGAAGAGGAAGAAATAAACGAATTACAGGAGGACGACAGAGAGCTGTTCTCAGATCAGCTGGCCAGTATCGGCATGTTGGGCCGCATCGCTGCAGACCACTGTATACCTCTGCTCACAGGTTTGTTGGAGGACCGAGTCACACGGCTTCACGGGCAACTCCAGAGACACCAGCAGCACCTCATGGCTTCTGCAGACCCTGGCACGGTGGACCGGAAAGTTCTAGATGACCTTTATGAAGACATTCATTGGCTCATATTAGTGTCAGGTTACCTCTTGGCTGATGACCCTCAGGGTGAAACACCATTGATACCTTCAGAAGTGATGGAGTATTCTATCAAACACTCAACTGAGGTGGATATCAACACTACACTGCAGCTTCTTGGCTCTCCTGGAGAGAAGGCCACCTCCATCCCAGGATGCAACAGGACAGACTCAGTTATCAGGTTGTTATCTGCAGTGCTAAGAACCTCAGAGGTGGAGTCGCGGGCTACACGAGCGAGTCTGACTGAGCTCCTGAGTCCTCAGATGGGCAAAGACATTGTCTGGTTTCTTCGGCGCTGGGCCAAGACATACCTGTTAGTGGATGAGAAACTCTACGGCCAAATCAGTATGCCTCTCAGCACAGCTTTTGGAGCAGACACGGAGGGAGCGCAGTGGATCGTGGGATATCTGTTGGAGAAAGTGATCAATAATCTGTCGGTGTGGAGCTCTGAGCCAGAGCTGGCTAATGACACTGTGGAGCTGCTGGTGACTCTggtggagaagagagagagGGCAAACATTGTAGTGCAGTGTGAGAACTGGTGGAACTTGGCCAAGCAGTTTGCCAGTCGCAGCCCTCCCTTACATATGCTGTCCAGCACAGTCCAGCGGACTCTGATGAAAGCCCTGGTCCTGGGCGGCTTTGCTCATATGGATTCTGATACCAAACAGCAATACTGGGCAGAGGTACTGCATCCACTCCAGCAGCGCTTTCTCAACCTCATTAACCAGGAGAACTTCGCCCAGATCTGTCAAGAGGAAGCCGTGAAACAGGAGATCGTTGCCACTCTAGAAGCTCTGTGTGGCATCGCAGAAGCAACGCAGATCGACAATGTGGCATCTCTCTTCAGCTTCCTCATGGACTTCCTGTCTAGCTGCATTGGTCTCATGGAGGTCTACAGAAATTCGCCAGAAACGGTCAACCTCATCATTGAGGTGTTTGTGGAAGTGGCCCACAAACAAATTTGCTACTTGGGGGAGACCAAGTCTATGAAACTGTACGAGGTATGCTTGACGCTGCTGCAGGTTTACTCCAAGAACAATCTAGGTCGCAAGAGACTAGATGTAGCCGCAGAGGAGGACCAGTATCAGGACCTTCTGCTCATCATGGAGCTCCTCACCAACCTGCTCTCCAAAGAGTTCATTGACTTCAGTGACACTGatGAGGTGTTTCGTGGGCAAGAGCAGAGCTCTGGTGCTGGACGAGCCGTATCAGCTGCTGATGTTGTGCTGTATGGGGTGAATATTGTTTTGCCCCTCATGTCTCAGGACTTGCTTAAGTTCCCTTCTCTTTGTAACCAGTATTATAAGCTCATCACTTTCATTTGTGAGATTTTCCCAGAGAAGATCCCTCAGCTGCCTGAAGAGCTCTTCAAAAGTCTCATGTGCTCCCTGGAGCTTGGCATGACCTCGATGAGCTCAGAGATCAGTCAGCTCTGTCTGGAGGCTTTATCCCCATTGGCTGAGCAGTGCGCCAAGACACAAGAAAAGGACACACCCCTATTTATTGCCACACGACATTTCCTTAAACTGGTGTTTGACATGCTTGTGCTCCAGAAGCACAACACCGAGATGACCGTAGCAGCAGGAGAAGCGCTTTATACACTAGTGTGCCTTCACCAGGCGGAGTATTCAGAGCTGGTGGAGACGCTGCTCTCCAATCAGAGGGACGCCGTGATCTACCAGCGGCTAGCGGACGCATTTAACAGCCTCACTGCCAGCAGCACGCCTCCAACCATGGACCGCAAGCAAAAGGTGGCCTTCCTGAAGAGCCTGGAGGAGTTTGTTGCCAATGTGGGGGGGCTTCTGTGTGTAAAATAAGCCGCTTCCTCAAACAAGCTTCCCCTCGCCTCCCCTCTAACAGTCAGAGAAGCCTTTCACCATGCCAAACCATGGAGATGCTGAGACCCCTCTGGGCCTTCAGACACGCGCCtccagagagcagagagaggcTGGCGAAGGCCGAGAGGGGACGGCCGGTCGCGATCGTCTCAGTCTGAGCTGACCGTTGTTTACTTTGCCACTGAGAGCTCCTCCGATGAACGTTTATGAAATGCAGAGGGGTGATCTTTCTGAAAACTGACCCCTTCCTTCCCCCTtttagacacaaacacacaagtctTTTGCAGACACTTCTCCTTGAGTGCCTTTGTTTGTGGTTTCTCACGGCTCTGATCCAGCGGTGTCCTTGGCGACAAAGAGCATCGTGTCGTACTGCTGTCACGGTAATTAGGATTGTGAGCTGTGGTTGCCTTGATAATGAAAAAGCCTTTCCCAATGAAACTGTAATTGCAGGAAGGCCCTTTTGGAAAACCAAATCACTTTTGTGTTTAAggttgtatatatattttcgaaaaagacaaaaaatgaaagtgtttaaaAGGACTGAAAGGTTTTTATAAGATTATAGTTGATGGaactttctgatatttttttttattgttatacaaTTTCACCAGGAGGACAAGGGGCTAGTTTGAATTTTTCTTTCTGATTGATTTGAATGATTGTAGTTTTACTCTTTGCCATTGTCATTTGGCCCTGATCGCAGCAGTATCACTGAAAGCGTTCTCAACAAAAGTACAGGTCTGTTAAATTATGATGGACATTTTTCTCACAATCGCCTGATGTTCCCGATAAGGTTTTTTCAGAAACAACTTCAACAGTGTTCCACTTACACTAGCGTGCACACACAACTCAGAATTGTGGAACAGTCGACGTTGCTGTAGCaataaaataccaaaaatgATGATCGAGGGATGTCAGCTGTTTTATTCAGGGCATTTGATGGACTTTCCATTTTCCATTGTTCAAAGCACTAATTGTTATTTTGGAATGCCTGAAATGATCTGTAAAGTGTATATAAACTTGCTATAAAAAGTGAGTTGTTTGTCTTGGTCTA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104075 lncRNA downstream 148724 14363039 ~ 14372674 (-) False LOC122351495
TU104049 lncRNA downstream 274070 14244287 ~ 14247328 (-) True G70332
XR_006251857.1 lncRNA downstream 332397 14173817 ~ 14189001 (-) True LOC122352120
TU104012 lncRNA downstream 596562 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 597294 13923749 ~ 13924104 (-) True G70308
TU104132 lncRNA upstream 43158 14589858 ~ 14590275 (-) True G70393
TU104140 lncRNA upstream 47563 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA upstream 47724 14594424 ~ 14595342 (-) False G70396
TU104213 lncRNA upstream 370100 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA upstream 370100 14916800 ~ 14918840 (-) True G70438
XM_043248402.1 mRNA downstream 57 14518928 ~ 14521341 (-) True eef1akmt1
XM_043248400.1 mRNA downstream 14444 14496786 ~ 14506954 (-) False cryl1
XM_043248401.1 mRNA downstream 14451 14496786 ~ 14506947 (-) True cryl1
XM_043248078.1 mRNA downstream 25303 14493429 ~ 14496095 (-) True gjb8
XM_043249754.1 mRNA downstream 28722 14486809 ~ 14492676 (-) True gja3
XM_043249439.1 mRNA upstream 5482 14552182 ~ 14569134 (-) False lats2
XM_043249438.1 mRNA upstream 5482 14552182 ~ 14569134 (-) True lats2
XM_043249437.1 mRNA upstream 5482 14552182 ~ 14569133 (-) False lats2
XM_043249440.1 mRNA upstream 23110 14569810 ~ 14573059 (-) False LOC122351989
XM_043249442.1 mRNA upstream 23110 14569810 ~ 14573037 (-) False LOC122351989
TU104031 other downstream 267622 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 581530 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 708071 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1025753 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 756403 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 843149 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1224721 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2270440 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2270440 16817140 ~ 16823775 (-) True G70986

Expression Profile