RNA id: XM_043248407.1


Basic Information

Item Value
RNA id XM_043248407.1
length 10438
RNA type mRNA
GC content 0.44
exon number 25
gene id LOC122351370
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13985015 ~ 14086771 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agcgaCGGCAGACCTCTCTGTAAACAGGCTGTCAGAAAAGAAAGTGCAGGGACGTTTTCATCCGCTACAGCCAAAGGAGAGCGTTGCGTACAACACTGAAGGATAATcacgagagggagagagagagagagagagagagcgagagtgaGAGAAGGTTTAATTAATTCATGCAGGAGGGGAGGGATGTTTCTGCCGCTGACTGAGCTGGTTCCAGCACTGCCTGTAGCATTTTGCTTGTGAGCCCATCTATACTGTGACCGTGACAGCACTCAGATCAGCCAGGATCTAACGGACACCATCACCTGAACAATCGGAGACTGAAAATTTCAACTTCGGTGGAAAGGTCATCGGTTGCTCCGTGTGCACCTGTCACCTCCCCACCGCTACTCCAGTCCCAGCCCCTACCGGTGGCACGGCACGCCTCACCTTCACACTGCCCTCGTCCTTGTGTCCCTCCTTTGTTTTGCAACTCCACGTCGGGGACGCCAATTCACCATCTGTTACTAAGAAAAGGCAACACGATCATGCCAGATCGTGCCATCTCCTTCTCATACCTCACCTGAGGACGATCAGCGTGGTTCCCCCGGCTCTTCACGAGCACTCTGACCGGCGAGATGGGAGACTGGGTGTGTCTGAGCCCAGCCGAATTCTCCCAGCTGCAGCAGTACAGTGAGTATTCCTCAAAGAAGCTTAAAGACGTCCTGGAAGAGTTTCATGGAAATGGTGTCCTCTCCAAGTATAACCCTGAACAGCCCATCGACTATGAGGGCTTCCAGCTATTCATGACGACCTATCTGGAGAATGACATCCCTGAGGAACTTTGCAAACACCTCTTCACTTCCTTCAAGAGCAAGAATGGAGGAGGCAGCTCCCCTGACACCTCTCGATCTGGAGCAGGCATGCTGGGTATGAATGGGAAGAGTATTTTGAGCGCTATGAGCCGACATGCACCAGAGAACTCTGCAGGGATCACTCCAGGCTCAGGGGCCACCACATCGCCCTGCTCGTCCCGCTCCTCGTCACAACGCTCAGGCACAGGGGGCCACACACCCAGAGGCCCCCACCGCTCACCCGGCACGCAGCCCAATCCCCCAgcgagcagcagcagcagcaatgcTTTGGCTCTCTCCAAGACTACCAACTCCCCGCGCCTCTCTCCAGAGCGTAACCAATCAGAAAACCGTACATCTCTCCGGAGAAGTCCTTCTCCACAAAAAGGATCTCCTTCACCCCAAGTGGTCTTCCTTAAAGACATTGTGTGCTACTTGTCCCTCCTGGAGAGAGGGACGCCAGAGGATAAGCTTGAGTTCATGTTCAGGCTGTACGACACAGATGGCAATGGTCTGCTGGACAGTTCGGAGCTTGACCGCATCATAAACCAGATGGTCCATGTAGCTGAGTATCTAGAATGGGACTCTACAGAACTACGACCAATTCTGAAAGAGATGATGGAGGAGATTGATTATGACCGGGATGGAACGGTCACACTAGAGGAATGGATCAGAGGAGGAATGACCACCATACCACTCCTGGTCCTGCTGGGAATGGAGACGAATGTACAGGAGGATGGGCAGCATGTATGGAGACTGAAGCATTTTAACAAGCCAGCATACTGTAATTACTGCCACACTATGTTGTTAGGAGTAAGAAAACAGGGCCTTTGCTGCTCACTATGCAAGTACACAGTCCATGAGCGCTGTGTGTCCAAAGACATTGCTCCTTGCATTAGCACCTACGCCAAGTCCCGCAGACACACCAATGCTATGCAGCATGTTTGGATGGAGGGCAACTCCCTAACAAAATGTGACAAATGTCACCGCAGTATCAAGTGCTATCAAGGTCTAACAGGCCTTCACTGTGTTTGGTGTCAAATCACTCTTCATAACAAGTGTGCGTCTAATGTGAAGCCTGAATGTGACGGTGGGCCATTAAGAGATCACACACTCCTGCCGTCGTACATCTGCCCTGTTGTTTTGGACCGTCATTCCGCCGCCAAAAGAGGTGAAGGAGAATCATCGCCCAGTACCAGCCCTGAGGACACCGGCCAGTGTTTCAAGTTCACCGGTGACGGTCAGGCACTGCAGATCACCCCTCTGCCTGGGACGCACCCCCTCCTCGTGCTGGTTAATCCCAAAAGTGGCGGTCGGCAGGGAGAGAGGGTGCTGCGGAAATTCCAGTACCTGCTTAACCCCAGACAGGTGTACAGTCTGGATCGAGGAGGACCCATGGCGGGGCTCAACTTTTTTCGAGATGTGCCCAATTTCCGCGTTCTGGCTTGTGGAGGGGATGGATCAGTGGGGTGGATTTTGGACTGCATTGATAAAGCCAATTTCGCTCGGCATCCGCCTGTTGCGATCCTGCCTCTGGGTACCGGGAACGACCTCGCTCGCTGTCTGCGCTGGGGTGGAGGCTACGAAGGGGGCAGTCTGGTCAAGTTCCTCAGGGATATCGAGCACAGCACCGAAGTGATGCTTGACCGCTGGAACATCGACATTGTCCCTGACGATAAGGAAGAGAAGGGCGACCCTGTACCCTACAGCATAGTGAACAACTACTTCTCCATTGGAGTGGACGCATCCATAGCACACCGCTTCCACTTGATGAGGGAGAAGCATCCAGAGAAGTTTAACAGCAGGATGAAAAACAAGTTGTGGTACTTTGAATTTGGCACCACAGAGACCATCTCAGCCACTTGTAAAAAGCTGAACGAGTCCATTGAGGTGGAGTGTGATGGCATCATTTTGGATCTCAGCAGCACGTCTCTGGAGGGTATCGCTGTGCTCAATATTCCCAGCATGCACGGGGGCTCGAACCTGTGGGGCGAGACCAAGAAAAGACGGAATTACAATCGCATGAGTAAGAAAGTGCCAGAGAGAATGACTGGCACTACTGTCACCGACGCCAAGGAGCTCAAGTTTTGTGTGCAAGATCTAAGTGATCAGCTTCTGGAGGTGGTGGGTCTGGAGGGAGCCATCGAGATGGGTCAGATCTACACAGGTCTCAAGAGCGCTGGGCGGCGCTTGGCACAGTGTTCCAGTGTCACCATCAGGACGTCCCGTCTGCTGCCCATGCAGATTGATGGAGAACCGTGGATGCAGCCTCCATGCACGATACGGATTACGCATAAGAACCAGGTGCCCATGCTGCTGGGACCACCACAGAAAACGTTCTTCTTCTTCAAGAAGCGCAACAGAAGTCGGGACTAGATGTGGGGCTCCAAAAACCATCCACTCTTCTACAATCATACACTCAAGCATCTCCACCTTCCTCAGCTATATTTCTTTATCTTTGGGAGGTGGGACCCAAAGAGAAGAGACCTTTCAAACACTTTTGAGGCAAATCAATACAAACACAACACTGTAATGGATCTCTAATGGACTCCACCTCCCAACACAGTCTGGTGTTCACAGGCTGAACCCGTTGAACAGACCCTCTCTGAGTGTCATGACCACTTCCTGTGTCTTATCATCCAGATCGTCTTATCACAGGCTTCTGACCTGTAAGCTATGACTCAATTTCACCAACCCCCCCACCAGTAGGCCACTGCCTTGGGATCACACGGTGTGCCCTCTTCCTCCTTTTAAGACGGCTCATCAGAAGATACTGCCAATTTCAAAGAGGGACAGAGAGGACCAGAAAAGCAGGAGACTCGCCCAGCAAAAGGAGACAAAGTGTGTTCAAGTGAAAAGAGAAGCAGAGCGAGAGACACCCTGGCATGATAATGTTCTTCGCATGAGAGTTGATGGTGCACATATGGACGTCACTGGGCCCTAGAAGGACCAGGGAACAAACTTTCCTCCTAAAGGAGTTTACTGAATTATACATCAGTGCATGCAAAGCACTCTTTCCAGTGCCTCTCCAAGGCCCTGAGACATGCCATCGCTAAAGAGATGAAACAGCATACTCATCCATTATGAAGATGTTTATGGGGGTTTGCTGATAGGGATAGGTTAGCCTGGCCTCAAAGAGATGAAACATTTTAGCTTCTGGTGTTTGCTCGGGGCAGTTTTGGTGTTCACCCTCAGGCCACAAGACTGACCAGTGCAAGGTCTGTTATAGCTAGccagttgtttattttatccCATACTGCCCTCTAAAACAACACTGCGAAAAATGGACCTAAGGTCTCAAAAAATGAAGTATAAATTTAGAAAACCGTTAGTAGAGAGAATCTGTGtactaaaacagttttaacaaTTAGCATTTATATCGTAGCAGTGTGGCAATTTGTGCAATAATATGATGACcgtatcatatttttttaagccAAATCAAAATAACTTAACATTAAGTACCATGAGGATAGACTCTGTCTATAAAGAAAACATCTTACGCCAGCCTATGCTGGTTTGCTGGGAGGCCTGCAAGTAATCTAGCCAGACTAGCTGAAGACTATCTTAATAACCTTTTCACACCAACATGAATGTACGGCAGAGAAATTCGATccatttttgatttgatttgtctgTTCATATCAAtgccaaaaaaagaagaaagactgaATGGAAAATGAAACTTCATTCTATAACAGTAGGTGGCGCTTACAGACAATGAGATTTATAGCAGCAACTCAGGGCATGTGACCAAATTGTATTGGTTGGCCAGTTTTCTTGATAATGCAATCTAATCAAAAAAGAGatctttataaaaaattttatccaTGTAAATGTCTCAATAAGAACAGGACCATTAATAGCTTTCAAATTCATTGACactgaaatgtataaaagacTGAATTTTCGCACTAAACATTcgtcttggtgtgaacaggtcACAAGCTAGGACCGTCAAACCAGTTTAGGcttgttttaagtgttttatcagCAAGATAcgattttaatcaatttattttatttttttttacataaggaTATAATGGTTAAGACagtaattaatttgttaacatttgttaatgcattagATGTCAACAGCTAACACTGAAAATTGCTTGGTTCAATTTCACATAAATTTATTCTGTTGTTCATTGttaatattcatgtatatttgaATGATCTTAAATAATCGAATACAACCTAAACAAATCCACCCTTTATGCATTAACTTATGTTAACAAATCAAatattgtcatgttttgttACAgaaccaatttaaaaaaaatatttgctacATATTCCTGAGAAACAAAGTCTCTTCACTGTAGCTCAAAGCATCTCCATTCAGAGGCGGGCTGAAATCGATCCAGCGCTGGTATTAACACTGAATCCTCTGGTCCTCGTCTGTCACAACAAGCCACTGCAGTGGGGTTTGATTTACTGCTGCATGGACGGAGCCTAAATTTAACTTCCTATTTCAGGGAGTGAAACACTATTCCTAATTGCAGCATGAAAACATCAGCTCGCAATTTCAGGTCGACAGTCAAGCGGGTGTGAAAGCGGCCCAGATGAATGCAGAGAAACGGAAGTTACTTACGGTTACCGTCAACAACAGTGACCTTGAGATCCAAAAAGtgtgctttttcattttctagCCCTTCTGAGAAGGCCTGTGAAGAGTATTTAATTCCCGACATGTATCAGTATTCATATACTCCAAGAGCcttttgtgcatatatatgaatgtgtttaaAGGTATAACTTGATATAGTATCAGAGATTAGCTAATGGGTCACATGATTGACTGTAGCCATCAGGCAGATGTGCCTGATATAGATCAACATGCAGTGATCATCAGATGCTTTCACAGTGTGCCATAGGGCACAAAGATCTGTGTtggaactatatatatatatatatatatatatatatatatatatatatatatatatatatattttcaccaATACAGAACTGGGTTTAGACTGATCTAAAGTTCAGGTGTCGACTTTGGAAACTGAGCTCTTACTAGGGTTAGCAGGTTAACGTTCCCTTTAAAGAACACTGAACCGCAGAAGATACGCCAGTGTCCTAAAAATGCTAATCTCTCCTTATGACCACAGAGCAGACGCTCACCTTCAGCCAACAAGTCGGTTTATCATAGAAGTTAATGGTGGATTTGGCTATAAGAGCCCCATTGTTCCTGTGGTCATCGGACAGATGGTTTATCCTGTGTGACAGTCTGGTGTTTAAAGAACGGCGGTTTGGTTACAAGTGCATGTTTACAActacttttcattttacagtttagaatgattttaaacagtcatgtatatatagatattgtttatattttctctaaagTTTAACCACCGCATGCCTGCTGAAACAAAGAAGACAAAGACGTCTGCTTGAAGAGAGACCACGCTGATTGTTGCTACTTTATTAGTTTCACATGATTATATTTTTGGATCCTACCCAGGCCCCTTGTATCTACCCACTGTGCTTTTCCTCAATCCGCTAGTAGCATGTTCATTGTACAAGTACCTCTGTGGATGTTCTCCgttctgttttgtattttgtaaactGAGGTTTGGCACCAGTGTATGCCAATCGATGGGCGACTGAGGAATGTCACGTTTGGTAAATGTCATTTCTAAATCATACTGATGTCACCTTCTGTTTAATTTCTGTGAATAACTGATAGCCTTAACTTGCCAATACGAAATAGCATTTTGCCTGGAGCAAAGTCTTTTGCAATACaagtcactgaaaaaaaatcaaccaaaCGATGGAACAAAATAGAGGGTGAAAAAACGAGAGGTCAACATCTGTTTTGCCGTGTTGCAATAACTCATTTTTGTTAGTGTCATCATGCCGGCCTGTGCGCTCTCAGAGAAGAGTGGTGATAGAGCGATGTCCTGCACTTCACAAATGATGTGCTCCATGATGTCTCTGACACCACATATGTCTTCATTTGTGGACTGGACAGCTTTTATCTATTATTTGTAGCTGTCCTAAAACTGTGATTGCTCAATCTGCCCATCCATGTTTCTTTTCTCTTaacaataatacttttaaaataatcatttttaccTGTCAAACCGTGCTGCCACTTGCAGCGTTGTGCTTTCTTCagaattgaattttaaattcaaattcaaattctaaatttgaaaaaaagatgaatggTAATTCAAAGCAGTTCATGTGTCACTAAATAAAGCTGCAGTCTGATAATGTTTTGCCAAAAAGTCTCAAATATTAATGGTTTGTTGGCCTTATAGAGAACGGTGGATGGatagaaaaccttttttttccagGATGCATTCCCTGTTGAATTACAATTCAATAAATTCCTCTTCCCGACATTCTGATTTCAAATCAATTAGGGTGTTTGAAtgtttattcaaattcaaacttATGAATGGGAAGGAATACGGTTTTGTTCAGTTCTGAATTTTGCACAACCCTggcatcttgagacaaaaccAGGAAAGATTTTTAAGGACGGTGAACCAGAATCCTGGACTTAAATCTGAAGAGACAATGCGGCTTATCTCGGTGTAGCTCTATTCTTAGCTGAGACAGATGAGCGGTATTGAGCACCACTGATGCAGTAGAGCCCATATCAACCCTGAATGTGATGTTCTACATGTGTGCTAAACTCACTGTCTTATTCCTGCCTTAGGGTTAGTGTGGTTTGTAGCAGTCCATCTGTGTGGTAGGCAACAAGGTTCAAGGACAGGAGTCCTACAGACTGAGATGGGGTTAAAGGGTGAATCGTGCCCTTGAAAGACCCACTTAGACTCTGTTACTCTGGTTCTTGTAAGCTGTTGGCATCCATGTTAATGGACAAAAGagtttattgaataaacggAGAGACTGAAGCTTTGCGTCTGGTGTGGGTCATTGGGTGGCTCGGCCAGGGTACTTACTCGCATCCTGCAAAGATGCCCGACACAATCCTCTACTTAACGTGATTGAATTTCAGTTCACGTAGTAAATCACAGATTTCAGTGCTCCTGGGGAAATAATGTGAGCTTTTAGCATGGTACTTAAGATCCGCACAGCTCAGTAGATATTAGCACACTTTAACACTTCCATCTGTCAGACAACACCTTCAGTCATGATTGCACCTGTACAGACTTGCACACTTGAGTTTCAATCATACCGTGATGCTACTGAAAGACATTGGCAGATTTTCTAATTCAGTCTTTCACAAGTAATGGGTGTGTTATTCTCCTATTATGCTGACCCTGCACACTGAAGTGAGAATCTGTAATGAATGCTGACTAGATTATGTGGCATATCAGAAAATTTTACCTTTAGGGGTAAAACTGGGGAAGTATGCTCGAAGGGTACTAATATTCACCCTTTAAGTTTTGATTTTTGGTACGAAGGTGTTCCCAGTTACAAGCTGTTATTGTAGTGTAACCAAACAGTTCATAAAAGAAATGATCCAGATTCACTACAAGTTAAGTTCAACATCATTACACAcgttaaagaataaaataaagattccAAAATTGGGGTTTCACAGCAGAGATTTTGTGTAAACTTTGTCAACCTTTAATTGTCTTGGAAAAAgtaatgtgcttttataaaattaacTTCACATTCCTGCTTAAATTCTCAAATAAATGGCTCCATTTGCTTCCATTGTATGAGTGCTTCACAGATTTAGCCTTTTTTAAAGCCCGTAGtccatagttttttttcagttttttttttcattaaagtcATGCCACAGATGCTGCCATTTGAGCTCAACGTTTACCCTGaaaattcttttaaatactCTCTTCACTAGCAGTGTGTCATACAGTTAAACACTCAATATCAGTGTGAAAATAAGTAGCTTCCCGATAATTCAAGTGCACCATCACTGTACTTGCAGTGTCATTTACAGTAGACGGTATGAGTGTTTGTTTTCGTCAGGCAGCCCTGTGGCCTCTGCGCTTGTAAATACAGCCGTGTTAGAAGAAAAATGCAGATGACACAACAAGAAGCTGTGAGCTGGGGCAAAGCCTACGCGTCTTGGGTGTGCAGAGATAATATAGCAGGAATTATCTCTCCATGAACTATTAATAGTCATCAAGTCCCATCATGTCTCTCTTTGGGAGAGCACCAGTGGCCCAGGGCTGTGTTAACCTTCATTCCACTTCATTAACTGTCTGTACCGAGCTGATTTTACGCAGTTTTCAGGGTGTGTTCAGTAGTACACAGGTTGCGTATAATAACAAGGTTTAAAAGTTTTGATTTTTCTCTTGTGTTACAAGTGTTAACGGCGTAGGaatctgatttgctgctctgTCCGTCACCCCTCATTTAACTCTATTGTCATGTGCGGTACATCTCCTTCCACGGATTAGCCCACATTTCCAGAGAAGGGCAGGCTGCCAGAACTGTCACACTGACCCAGTCATGGGCACAAATAAGCCCTTCTCATTATCAGTGAGTGATAGCGGATCATTTCAATATTTGTcccaaaaaaaatgaaaggtaTCAAAGAGATATCATGTGCCGCTGATGCCTGTGTCAACACCGCTCTGGATTTAGGAAGCAGAATAATGGAAATAGAATATGCTCTTGGCCACCCCCTTCCCACCTCCCACCACATTAGTGAAAGGTGCTATAAAAAGGAGACCCTGACAGCTCTGCGGAGCTGAAAAGCCCAGCTTTAGCAGCGTCAAGCAGAAGAAACAATGACACCAGTAACTGCATACGGCACATCTTGTTCATGCTATCATTGTGCTCCTGTGAAAGTGGGCTCTGCTCGAAAGCCAGAAGGATTTTAAAGATTATCCTCCTCACACTTGACGCTGaatttttctctccctctctttttcacaGAAACAGCTTTGTTAAATATAGATTCTAGGACATCTGGCCTTGACCACAATAATACATTGTAAATCCCTTGCACATCGCAAGACTGTGTAGCTTATTGTGTAGCAgattaaaaaatagatattgtattaattaatactTAATTAATGCCACAGGGAATCTATTGCGAACTAGTCCTCCCTTTCTGGTTGGATTTTTAGTGTTCATTACTCTCACGTTATAAGCTGTGCGCGAAGTTTGTttagacataaaaaaagaagattgtTCGTttaccttctttctttgcgcGCAACTCAGCTTtgtttatattctaaataaatgctaattaattaaaCTGTCATGCAACTTATGTGTTTTGCTGGCAATTCTACTTCTGGCTCTCTGGCCCTTTAAGAGCCTCTGGAAACGTGCGGGGAAAAATCTTGAAAGTGAATGAAACTCAGCCATTCATAAAAATAGGACAGACGGGGCTTCGATTGGTCGCTGAGCGCTTCATACATATTCCGAGTCATGCTCGCAAATCATTGGTTTAGAGACGTGAATGACGTGCGCTCGGAGCCAATGGGCTTCCAGATTCAAATGCTCTCGAGCCCAAGGGAAAACCGAGCAGTCCATTTACAAAACCTCATTCAAGTTTTGAGCGTCGGAGAGAGCGCATCTATTGATCAGTCCGAGCGCACTGCATCCTTTTGGGATTAAAATCTGaaacgtgttttttttcaatccaCTGCGAGAGGCGCGTCATCTATACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104012 lncRNA downstream 60179 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 60911 13923749 ~ 13924104 (-) True G70308
TU103897 lncRNA downstream 73162 13881750 ~ 13911853 (-) False rif1
XR_006251857.1 lncRNA upstream 100008 14173817 ~ 14189001 (-) True LOC122352120
TU104049 lncRNA upstream 170478 14244287 ~ 14247328 (-) True G70332
TU104075 lncRNA upstream 289230 14363039 ~ 14372674 (-) False LOC122351495
TU104117 lncRNA upstream 403523 14477332 ~ 14562992 (-) True G70382
TU104132 lncRNA upstream 516049 14589858 ~ 14590275 (-) True G70393
XM_043248144.1 mRNA downstream 12953 13961757 ~ 13972062 (-) False rbm44
XM_043248143.1 mRNA downstream 12953 13961757 ~ 13972062 (-) True rbm44
XM_043248526.1 mRNA downstream 23918 13925913 ~ 13961097 (-) True itgb5
XM_043248404.1 mRNA downstream 63418 13913874 ~ 13921597 (-) True tnfaip6
XM_043248863.1 mRNA downstream 72072 13895771 ~ 13912943 (-) False rif1
XM_043249448.1 mRNA upstream 19118 14092927 ~ 14093892 (-) True crygs3
XM_043248566.1 mRNA upstream 23066 14096875 ~ 14097614 (-) True crygs4
XM_043249650.1 mRNA upstream 97980 14171789 ~ 14172518 (-) False LOC122352116
XM_043249649.1 mRNA upstream 97980 14171789 ~ 14172518 (-) True LOC122352116
XM_043249256.1 mRNA upstream 115795 14189604 ~ 14190624 (-) True LOC122351874
TU103993 other downstream 45147 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 171688 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 489370 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 489370 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 999037 12985124 ~ 12985978 (-) True G69757
TU104031 other upstream 122670 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1229294 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1316040 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1697612 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2743331 16817140 ~ 16823694 (-) False G70986

Expression Profile