RNA id: XM_043248410.1


Basic Information

Item Value
RNA id XM_043248410.1
length 2020
RNA type mRNA
GC content 0.38
exon number 2
gene id si:ch211-184m13.4
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15179474 ~ 15181677 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAGGTTTAAGGGGGTGGGTCTCTTTTGAAGTAATTCAGCAAAACGCTTACTGAGTCACATCACTATCCAgctgaaagagagacagacaatcAAACCTGCTTCTCAGGAACATCGCAACAGAAGATGACAATGAATGCCAGCTTCTTAAACCAgacttgtgatgttttcatctaCAAGGAGTCTACGCGGATCATCTTTCCTATTTTTTATTGCCTGATTTTTGTCATCAGCGTGGCAGGTAACAGCCTGGTCCTCTGCATCACCTGTCAGAAAAAGCAGAAGATGAACTCCACCACCCTATATATCATCAACCTGGCCATCTCTGATACACTCTTCACTTTGGCTCTTCCCGGCAGAATCACCTACTACATCCGAGGCTTCGACTGGCCTTTTGGAGATTTCTTTTGCCGGCTGACTGCCATGATCTTCTACAGCAATACCTACGCTAGCATTGCCTTCATGACTTGCATCAGTGTAGATCGCTACTTGGCCATGCTGCACCGTCAGAGGTGTCAAAAACTGAGGAAAATCAAAGTCGTGCGATGTATCTGCATTCTGGTATGGGTGATGGTGCTTCTTGAGACCTCCCCTCTGCTCTTTAGGAACATTATGGAAACCAGGGCCAACCATCGAACGTGCatggaattatttaatttagatagCCACGGGATGGCTATCACTCTCCTGTTTGCATGCATCATCGGCTTTTGTTTTCCATTGGGACTCATCTTGTGCTGCTACAGTCAGGTCAGTTGCAAGCTCTCAAAGACAGCCAAAGAAAACCCAGTGACCAACAGGTCTGGAAGCAATAGCAGGGCCAAAAACATGATCCTTCTCATTCTGCTGAGCTTTGTGGTGTGTTTCAGTCCCTACCACATCAACATCATGCAGTTTGCAGTGAGAAGGCTACTCAGTGAGCCCGACTGTGAGGACTTAAAGACTTTGAAAATGTCTCTGCAGGTAACCGTTGCGATGATGAACTTTAACACCTGTCTTGATcctattatttacttttttgccATCAAAACATACAAGCAGAGAGTCATGAGTCTTTTTAAGAGCTACATTTCCATTTCAGCATCATCCAGGAGCATGCAGGAAAACAGCAGCAGTAACACATGAGGGCTgaaattatgtgaaaaaaacGGTGCAAACTGCAGAGGAAATGTCTGCACACGTGTGAAAATGCGGTTGGATAGCTTTAGAGTACAGTTTCATATCTTTTCTTTCTGAGAAAATACAATACCTTATTGATGGTGTTAAaatctctttgtttttatttttgacatttttgtgaatttaagATTTCTGACATAAGATTACcgatttcatgttgttttttgtgatcattatgaattttaatatgaatttaatataattttgtcaCATTTAGAACTGctcattttgtttgtgtaatatatttcttattgtGATTAATATCTATGCTATTGgaatttatttccttttttttttacttggtcATGTAGGCCTTTCACTGACgtcaaataaaaattctgaGATTTAATTCTCAATGTCAATTAAAAATTCTGGCATTTGCTTACCCTCCAAACCCATACAAAAACTTTATCAATTTTATCagatttatcaaaaaaaaaaaagcaaacaaaaaaaacatgaaatatgcCGTTTAATCCAATTTGTCTAcccaaataaacattaatctctTCATTTGTGTTGAGAAAAAGGTCTTATGGGcaagtaaatgataacaggaCTTTCATTTTTTGTACAAACTAACTCTTCAagaataatgaattatttggAAAAGTCCCTCACAAAGGTCAAGGAGGCTAAAAGACCATTCTAAGTATGAGTGATTATGTAGGTGTATGACATTTCCATAAGCTGCTGTTTAAATACTGTGTTTTGCTTTAAAGACGCTCACAATGTGTAACATTTCAAGCGAACCCTTATAATGGCGTCCCATTCCATTTGGAAATTTTAACTTACGAAGCTGTCAACTTTCTTTGAATATCAATTAAAGAGTTCATTTACaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104311 lncRNA downstream 137744 15036082 ~ 15041730 (-) False LOC122351681
XR_006251790.1 lncRNA downstream 138651 15034819 ~ 15040823 (-) True LOC122351681
TU104296 lncRNA downstream 197621 14975412 ~ 14981853 (-) True G70494
XR_006251854.1 lncRNA downstream 236611 14937124 ~ 14942863 (-) True LOC122352110
TU104213 lncRNA downstream 260634 14916800 ~ 14918840 (-) False G70438
TU104306 lncRNA upstream 46619 15228296 ~ 15275841 (-) False G70503
TU104358 lncRNA upstream 75311 15256988 ~ 15260906 (-) False LOC122351294
XR_006251729.1 lncRNA upstream 76011 15257688 ~ 15262676 (-) True LOC122351294
TU104305 lncRNA upstream 88152 15269829 ~ 15275841 (-) True G70503
TU104406 lncRNA upstream 237322 15418999 ~ 15421577 (-) True G70581
XM_043249093.1 mRNA downstream 8804 15164299 ~ 15170670 (-) False gpr183a
XM_043249091.1 mRNA downstream 8978 15164299 ~ 15170496 (-) False gpr183a
XM_043249092.1 mRNA downstream 9355 15164299 ~ 15170119 (-) True gpr183a
XM_043249094.1 mRNA downstream 18196 15157104 ~ 15161278 (-) True gpr18
XM_043248244.1 mRNA downstream 172804 15001464 ~ 15006670 (-) True klf5b
XM_043248278.1 mRNA upstream 82202 15263879 ~ 15267519 (-) True zic5
XM_043248277.1 mRNA upstream 207541 15389218 ~ 15399437 (-) False tmtc4
XM_043248276.1 mRNA upstream 207541 15389218 ~ 15399437 (-) True tmtc4
XM_043249240.1 mRNA upstream 243770 15425447 ~ 15490245 (-) False nalcn
XM_043249239.1 mRNA upstream 243770 15425447 ~ 15490245 (-) False nalcn
TU104031 other downstream 925698 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1239606 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 1366147 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1683829 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 121426 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 208172 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 589744 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 1635463 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 1635463 16817140 ~ 16823775 (-) True G70986

Expression Profile