RNA id: XM_043248412.1


Basic Information

Item Value
RNA id XM_043248412.1
length 1905
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC122351375
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1660010 ~ 1688469 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGTCTGTTTTGTTGAATTGGCCACTAAGAGAGCAGAAAACAGTTTCTATGGTTATGGTGGATACACAAGTAACAGTCTTTCTGTAACAGAATCACTAAGAACAATTTCCTCAAGAATGCAAGTGGGTCTGGGACACTCAAAATGTAAAGCGGTTCAATATGAGCACCTACGGGACATGCTAGAGGCCAAACGCCTTTCCTCTCAGTTCTCTCAACAGAAGgtGCAGAAGGTGTTGGATGAAGCTCAGGTGAATAAGGAAAGGAGTGTTTTGAGACTGCATAGACAAGTGTGGCTCCAGGAGCACCACAGACTCAATATAGCCAGGCACAAGACTGAGAAGGACCTTCAGTGTTTTCTTCATGGATCTGGATTTAAAGAAGAAGACACAGATATAATTTTTCAGTTACAAGAATATGAATTGGACCTGGAACAGGAACGTGAGGTGTTTCGATTGACCACAGTGGAACCCGTTTATCAGCTAAGAGATGATCTGCAGTACAGACTTTCATTACACTCTTTAAAAGCCAATCACATCAGAGAGCCTGAAGAAGTCTTACAGCAGgTTCTGTCTGTCAGGCAGCAGCAGGAGGAAGTCATGGACAGATTGAAATGTGAATGTGTGCTTCTACAGCAGGACATCTGTGTTACAAAGCTTGagGAGAACCTACTGTCTGGTGCAATGGATGATCAGGTAGCCTATTTGGAGAAGGTTCCTGATGAGATCTTTACTGCAGACTGTCCGTATCCTGACCTCAGATCAGATCTGATCCACAGCTTtcattctctcactgagaaataTAATCTCAGAATAGCGATACAGGAGACCAGACTGCAAGGCCTGGACAGGAATTGTGGCTGGAATGCAGAAGATCATGAATGTTTCCAGCACATAATGAGTCAGTATTCCCCAAGTCTCCGGAACCAGCGCTCACTTTACATTGACATGGTGCAGAGAATGCTGCCACACATAACCAAACAGGAATTGTGTGCGCATGAGCGTCAGAGTGACTGGTATCATTTCAGCATGACACAGAAGAATCTAATACTGCGGGGCTGGCACCGGGATCATTCAGAGCTGCTCCTGAGGGCTTTGAGCATGTTGGAGGACTGCAGAATGTCTCACATACAGCAGCAGGAACTTCAGAAGCAGCGCTCACACCAGCAGAACATCTGCCTCAAACTTAAAgcaaagctaCAGCAGTGGCGCATTCAGCAGGAGGAGGCTGCGGATTTGGAAGCTTCTCTTGCTGCTTACTGGTTCAAAGACGAAGAGGAGAGACTGAGAAAGGAACAGCTAAGAGAAAAGACTAAAAGATCTCAACTAAAACAGCAgataAATAGGTTCCATGCAGAGAAGCAgatgaaacaagaaaaacaaagaaagaaggataTGGAGAGGCTTGCAGAACTGAGGAGAGAAATAGAAGAACAGGTGCAGAGAGATAAAGAAAGAGTGATGTTCAGGAGAGAGCGTTTTCAGCAGAGACTGCAAACGCGCGaagctaaagaaaaacaaaaacagaaggacgaaaaagagaaagaggaaagacTGCAGGCTTTACGCAaccagGTCTGTAAAGTAGCTAAGGCCAACCCAAAGAGGATGATGGGAAACACAGTGGCTTGGAGCGTACGTCAACAGCCTGAGGAAGTGTTTACATTACAAAGACCACTGTACCAGCTAAATACATTCACTGATAAACAGattGTGTCTGATCCCAGAGTGCGTATTGAACAAGCGCTCAGAACCGCAGGTCTCCACGACAAACCTTATGGAAGACAAATTCTATCTGAGCTCCAACCTCTAAAACCACCCAGACGAGACATGGAGTCTGCAGCATTCAGATCCTGAccaataattatataaatgtaatcttcgtttcacataaataaatcatgctttG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99052 lncRNA upstream 65558 1585935 ~ 1594452 (+) True G66952
TU99030 lncRNA upstream 132610 1525863 ~ 1527400 (+) True G66931
TU98988 lncRNA upstream 380832 1259617 ~ 1279178 (+) False LOC122351665
TU98987 lncRNA upstream 384288 1259617 ~ 1275722 (+) True LOC122351665
XR_006251784.1 lncRNA upstream 397420 1259579 ~ 1262590 (+) False LOC122351665
TU99157 lncRNA downstream 186 1688655 ~ 1692476 (+) False G67023
TU99158 lncRNA downstream 186 1688655 ~ 1692476 (+) True G67023
TU99160 lncRNA downstream 186 1688655 ~ 1692476 (+) False G67023
XR_006251855.1 lncRNA downstream 5255 1693724 ~ 1695529 (+) True LOC122352111
TU99198 lncRNA downstream 80911 1769380 ~ 1769588 (+) True G67048
XM_043248887.1 mRNA upstream 344115 1299556 ~ 1315895 (+) True LOC122351663
XM_043248881.1 mRNA upstream 420987 1231173 ~ 1239023 (+) False LOC122351657
XM_043248880.1 mRNA upstream 420987 1231174 ~ 1239023 (+) True LOC122351657
XM_043248877.1 mRNA upstream 580763 1067017 ~ 1079247 (+) True LOC122351655
XM_043248878.1 mRNA upstream 580763 1067025 ~ 1079247 (+) False LOC122351655
XM_043248940.1 mRNA downstream 25343 1713812 ~ 1727530 (+) False bpifcl
XM_043248938.1 mRNA downstream 25344 1713813 ~ 1736320 (+) False bpifcl
XM_043248941.1 mRNA downstream 25344 1713813 ~ 1736320 (+) False bpifcl
XM_043248939.1 mRNA downstream 25359 1713828 ~ 1736320 (+) True bpifcl
XM_043248603.1 mRNA downstream 173340 1861809 ~ 1865607 (+) True ndufa4l2a
TU98836 other upstream 525021 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 799854 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 855001 797133 ~ 805009 (+) True G66727
TU98627 other upstream 1197981 459574 ~ 462029 (+) True G66657
XR_006251792.1 other downstream 25344 1713813 ~ 1729395 (+) False bpifcl
TU99551 other downstream 1506326 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2225169 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2259567 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 2293058 3981527 ~ 3983582 (+) False G67566

Expression Profile