RNA id: XM_043248425.1


Basic Information

Item Value
RNA id XM_043248425.1
length 1732
RNA type mRNA
GC content 0.45
exon number 6
gene id ftcdnl1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13114503 ~ 13118222 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTCTGGAGTTTCACGCCTTAAAGTGACACAGTGTGCGTGAAAAACAAGGACGCAGTTTGTTTGTCAGTCAGTTACGCAAGacatttgttaattatttactcTGCGCTTTTTCAGTAAGCTACGTGCATTCTAAACTTTAGAACCGTTAGACATGAACTGATCAATATAGTGTCCTGCCTATCAACTTACACAACTTCATCCCTGAAAGCTCATGCATTTCTAAGAGAAGATTTACTAAACGAATGTCACTTAAATGTTCGTGACATTTCCGTCAACCAATTTAACATCAACCGGGATGTCCTGCTCTGCTCTCCGTGGACGGCTGGTTGCATGTCTCCTGAACATCTCAGAAGCTCGGAGAAGAGACCTGGTGGAGAGGGTGGCTAGATCAGCCATCACAGACACGCATGGGAAAAAGCGTGACGGCATCACGGTGCTTAATATCTTCAATGATGTTGACTACAACCGCTCTGTCATCACTATTGTTGCAAGCATTGACCTGATAAGGGAGGCTGTGCTGTCGGCTTGTGAGAGCGCATGCTCTCTGATTGACATGAATGTCCATGAGGGCATCCACCCATGCATGGGTGCAGTGGATCTGGTGCCTCTCTATCCGCTGGGGGAGGAGGTGGGCCTTGAGGATTGTGGAAAAGAGGCCCAGGCATTAGCCAAGGCTTTAACGGAGCGAGTCGTAGGTACCAGTGCCTTTTTGTTTGGCTGGGCTGATTCTCCTCAGCGTCGAGGTCTGGCTAAGAGGAGAAAGGAGATTGGCTGGTTCAAAAAGGTCTTTGATATGTCAACCATCCAACCAGATGTAGGTCCTCAGCCCACAAGGAAATATGGTGTTAcagGTATAGGAGCCAGCCCCTATGTCATGAACTGTAACGTGACCATAGATACCCAGGATCTAGCTGTGGGCCGAATGGTGGCTTCAGCAATCCGTGAATCCAGTCCTGGTGGTATTCCTGGAGTTCAGGTCATGGCTCTGCCACATGAAGGGGCCGTGGAGATCGCTTGTAATGTGGAGAGTGTTCAAGGTGGTCCTTCGTCTTCATCTTATGGTGAGGATAATTGGCCAAGCTTTACCATTGGAGGGCAAAGTTTCTGCCATGCTCCAGCCTCACTAATCAAAGCACGGGTAGCAGAGCTGGCTAGACACCATTGTGTGGCCATTAAGGGTATGGCTCTGGTGGGTTTTACCCCACGTGAGTGCCAGAGACTGGCAGAGGGAGCACTCACAAATGGCATTGGAGAGTTCTGGAGAGAGCTGCAGCGTGTGCACATGTGATCAAGAGCAGAGGTATATTTCAGCCAAACATTAtattgtcatttactcacccttatctCAATTCATCACTTTCAATGTCTTTTGTCCTCCTATGGAACATGAGCTTACGAAAATACTGggatattttccaaaaaaaaaaaaagtaaagcaagtttagaatgacatgagggtaagtaaattatgacagaattttcatttagtcTCCATTAATAGTGTTTGGTTCcaatctttttattaaaaagcttgAAACGCCTGATTAATGGTGGTTTATCTCATGTTTTGTGTCAGTTTGTTGTGATGGAAAAAAGGCTGGGAATAATTAAGCATTGATAAAATCGGACAAATGTAGGCATGCTTGGAGTAACTGTGTTATATGGAACACTTCATATGTTAATGGATAACATGCCATTAAAACTTGTTTGGGatgtttttaattgctgaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function
GO:0005542 folic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103184 lncRNA downstream 77050 13035956 ~ 13037453 (-) True G69762
XR_006251806.1 lncRNA downstream 325369 12787115 ~ 12789134 (-) True LOC122351847
TU103153 lncRNA downstream 340651 12773441 ~ 12773852 (-) True G69738
TU103148 lncRNA downstream 382760 12731041 ~ 12731743 (-) True G69733
TU103090 lncRNA downstream 467501 12645836 ~ 12647002 (-) True G69704
XR_006251825.1 lncRNA upstream 110422 13228154 ~ 13232210 (-) True LOC122351987
TU103357 lncRNA upstream 113135 13230867 ~ 13232202 (-) False LOC122351987
TU103390 lncRNA upstream 184671 13302403 ~ 13327413 (-) True G69888
TU103400 lncRNA upstream 193141 13310873 ~ 13325669 (-) True G69896
TU103479 lncRNA upstream 294080 13411812 ~ 13412439 (-) True G69953
XM_043248565.1 mRNA downstream 299365 12814153 ~ 12815138 (-) True LOC122351488
XM_043249565.1 mRNA downstream 385399 12723401 ~ 12729104 (-) True LOC122352069
XM_043248079.1 mRNA downstream 393813 12707976 ~ 12720690 (-) True LOC122351186
XM_043248932.1 mRNA downstream 479444 12619276 ~ 12635059 (-) False slc39a10
XM_043248954.1 mRNA upstream 12317 13130049 ~ 13137972 (-) True stk17b
XM_043249646.1 mRNA upstream 21924 13139656 ~ 13158302 (-) True hecw2a
XM_043249136.1 mRNA upstream 42552 13160284 ~ 13173784 (-) True pgap1
XM_043249139.1 mRNA upstream 56187 13173919 ~ 13176534 (-) True maip1
XM_043249133.1 mRNA upstream 61772 13179504 ~ 13211066 (-) False lrrfip1a
TU103179 other downstream 128525 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 376332 12738044 ~ 12738171 (-) True LOC122352189
TU103144 other downstream 402679 12708631 ~ 12711824 (-) False LOC122351186
TU102995 other downstream 691057 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 924847 12166991 ~ 12189656 (-) True gtdc1
TU103524 other upstream 355408 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 355408 13473140 ~ 13495645 (-) False gypc
TU103924 other upstream 690090 13807822 ~ 13813327 (-) True G70261
TU103993 other upstream 820527 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 1078747 14196479 ~ 14253776 (-) True G70317

Expression Profile