RNA id: XM_043248432.1


Basic Information

Item Value
RNA id XM_043248432.1
length 2108
RNA type mRNA
GC content 0.44
exon number 6
gene id nabp1a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13109217 ~ 13112949 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACACACCGGAGAAGCTCAGACGCTTTGTTAGAGAGGGAGAGGCGGATAGCGCTGTCAAATAGAGAGTTCCCCTCTTTTGCGAcagttttttaaattctttattttagtAAGGTGCAGTGCTACACGTGTAGAAAACAtgctatatattaattttaaaggcCATCAGGAAGTTTTGAACCGCTCATAACGCACATTAAAGTTAGGCAGCTGTAACTGTTAGTCATTTCGGCTGACACTCGTTTTTTAGATTACCTCTGTCGTTCGCATTTGCCTTAAAATATCGCTTAGACGCCAGATGAATGGTTTTCGTGAGGAAGGTGAAATGGAAAGACGCGCTAACGTTATTAGTTTACAGTTTGACCGGCGGTGTGTGTGACTGAACTCACTGACACGGTTTAAAACGAGACCGGCACGTTTATATAAAGAAACGTCCGTTTTCCACAGCTCTTTGTTAATTTGACGTCGTGTATTGATAGTGAGTAGGCTAACACAAAGACCGTGACTCAGTATAAATCAATCTAGATGCTAACCTAGACATTTTAAGCAGAGACCGACTTAGAAGCGAAGTCTTGGGGAGTTTTAGTTTTTCGGGTTTAGGACAGGATGAAGTCTAAAATATCTGTCTGGAAAACGAACTGAGTGTTTTTATGCGAATAGTTTAAATCGTGAGGGAGGAAATATTTCcccttttacttttatttccttttagcTCGATGAAGTGTGACAACAAACTGCCTCAAATGTTAAGCTAGAAACACCCCAGCCTTTGCAAAGGGGTCTTGAAAACCACGTTTATTTGCCAAGTCAAGTTTATTTGGCAAATAAAACGACCCACTCAGAGCACAGATTTAGCTTTAGATCAAGAAATCCTCACACAGCTGTGGTTTCGCTAGCCGGTGTGCTAGCCTCCACCTCAGCCCTCAGAAATGTCGAATATCTCCAACGAAGCTGTGATCTTGATTAAAGATGTAAAGCCCGGATCGAAAAACCTTAATATCGTCTTTATTGTTTTGGAAATCGGTCGGGTGACGAAGACAAAGGACGGGCACGAGGTGCGCTCGTGCAGGGTGGCAGATAAGAGCGGCAGCATCGCCATCTCTGTGTGGGATGAGCTGGGCAGCCTCATCCAGCCCGGGGACATCATCCGCCTCACGAGAGGGTATGCTTCCATCTGGAAGGGGTGCCTTACACTGTACACTGGAAGAGGAGGAGACTTACAGAAAATTGGGGAGTTCTGTATGGTGTATTCTGAGGTTCCTAATTTCAGTGAACCAAATCCTGAGCTGCTAGCACAAGCTAACCAGCAGAACAAGACGGGTAAAGAACAGCGGGGAAATTCTCCACCAAATCAAAATGCAGGAAATGGCACAGTGCCAGTATTTTCCAACAGTGCTGCACCTGTGCCTCGGGATGCCAATTTTGGGGGTCCAGGAAGACCAAATGGGCGTGTTCCAGGCAATGGGCCACCCCCGGTAACTGCAGGGGTTCCCCCTGCTCCATCCAAACCCACAGTTACCATAAGTAACGGCAGGGACCCAAGAAGGGCTTCAAAGAGATGAGACTGCGACTCCACTTCCATGTTCCTACTCCTCCCTAAAATCCCTCACAAACCATCCATACAATAAGCAAAACTACACTGCCAATCAAGAGAGATGAGGTTCAATGCTACTGTTCTACCACCTGTGCTTTTTGCTTTGTCATTTGCCAATATTTGCTTAGTATGATTACCATGAAAGGTTGGCATTCTTGTTACAGTTAATGGTTGGCACACTCTTTGTCCATTTGAGTGCTGCTTCAGTGGCCCACCGTTTCCTTTCCCTAAATGTGTTGAACTATACACCCTACTTGAACACTCGACGCACTTTCTTCTGTTAATTTATAGCGAATGCATTGTCATGTGATTCAGGAATGATTAACTGCTGTCGCAAATTGGGGAGTGAACTTCAAAGTGACTGATTATATGGGTTCTCCCCACCactttggccaaaaaaaaaaaaaaaaaaacttaccagAAGTGACCGTGTGAAAGGAAAGGTGATAGTTTGATTGAACACTTAGGATTATTTAATTAGGAATAAATCAAGAACGAAATGTTGGGAAATGAA

Function

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0070876 SOSS complex cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103215 lncRNA upstream 1385 13107595 ~ 13107832 (+) True G69789
TU103208 lncRNA upstream 2460 13106280 ~ 13106757 (+) True G69783
TU103136 lncRNA upstream 269066 12837719 ~ 12840151 (+) True G69723
TU103127 lncRNA upstream 305809 12773958 ~ 12803408 (+) False LOC122351618
TU103126 lncRNA upstream 334532 12773996 ~ 12774685 (+) False LOC122351618
TU103228 lncRNA downstream 17149 13130098 ~ 13133839 (+) True G69796
TU103514 lncRNA downstream 402740 13515689 ~ 13518237 (+) True G69985
TU103566 lncRNA downstream 556157 13669106 ~ 13669444 (+) True G70021
TU103585 lncRNA downstream 572847 13685796 ~ 13686466 (+) True G70029
XR_006251759.1 lncRNA downstream 573716 13686665 ~ 13687505 (+) False LOC122351436
XM_043249598.1 mRNA upstream 3006 13094152 ~ 13106211 (+) True cavin2a
XM_043249689.1 mRNA upstream 18875 13035893 ~ 13090342 (+) True tmeff2a
XM_043249688.1 mRNA upstream 18875 13035904 ~ 13090342 (+) False tmeff2a
XM_043249204.1 mRNA upstream 297742 12789290 ~ 12811475 (+) True LOC122351846
XM_043249203.1 mRNA upstream 321780 12778913 ~ 12787437 (+) False LOC122351844
XM_043248429.1 mRNA downstream 5330 13118279 ~ 13121043 (+) True c9h2orf69
XM_043249138.1 mRNA downstream 63664 13176613 ~ 13179387 (+) True tyw5
XM_043248268.1 mRNA downstream 98796 13211745 ~ 13213541 (+) True LOC122351306
XM_043249434.1 mRNA downstream 106674 13219623 ~ 13225136 (+) True ackr3a
XM_043249435.1 mRNA downstream 119357 13232306 ~ 13235269 (+) True rpe
unassigned_transcript_1466 other upstream 721 13108415 ~ 13108496 (+) True trnas-cga_5
TU103176 other upstream 123239 12984868 ~ 12985978 (+) True G69755
TU103175 other upstream 123239 12985171 ~ 12985978 (+) False G69755
TU103123 other upstream 336108 12772088 ~ 12773109 (+) False LOC122351618
TU103124 other upstream 336108 12772424 ~ 12773109 (+) False LOC122351618
TU103281 other downstream 176744 13289693 ~ 13304591 (+) True G69834
unassigned_transcript_1467 other downstream 310765 13423714 ~ 13423826 (+) True trnal-caa
XR_006251758.1 other downstream 563214 13676163 ~ 13681991 (+) False ccnt2a
XR_006251807.1 other downstream 2288179 15401128 ~ 15425039 (+) False si:ch211-168k14.2
TU104429 other downstream 2595287 15708236 ~ 15711177 (+) False LOC122351678

Expression Profile