RNA id: XM_043248468.1


Basic Information

Item Value
RNA id XM_043248468.1
length 1898
RNA type mRNA
GC content 0.44
exon number 11
gene id acp6
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10051625 ~ 10057760 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTTCCCGCTACACTTTAGAACGAGACTGTAGACCTCTGAAACTACACTTCCCAGAATGCACCTCGCCCTAGCGTAATATCCAGTTTGCCTGAACTGAAAGGAATGAGTGCAATTTAAAAGCAGTGGACTTAATGGTCTGAAACCTTCAGGTGCATCATGTGGGCACGTGTGGGATTAATGGGTTCAGTGGCCCTCGGGTCAATGTTCTGGTCTCAAAAGAATAAGACTGAAACCTCTCCATACGAGCTTAAATTAGTTCAAGTTTTATTCAGACATGGAGCGAGAACACCACTGAAATCTATACCAGATGTTTTGGAGGCACAATGGGTCCCACAGCTACTTGAAGCACCTGCTCACACAGAAATAGACTACATGGTTACAGACTTGCAGGGGGGACCCAGACCCCCGGCTCCTGTGGAGGACAGCTACAGATCCAAAATACTGGCAGGTGGAACTTATCCAGGTCAGCTGACCACTTTGGGCATGCAACAGCTGTACGATCTTGGAGTGAGGTTacgaaaaaaatacatacaagaAGAGCCCTTCCTCACACCTTCTTTCAACCCTAAAGAAGTTTACATTCGCTCTACCAACATTGTCCGCACCATTGAGTCGGCTAAGTGTTTGGTGGCAGGACTGTTCCAACAGGAGCAAGCAGGAGTTGTGTCCATCCTCACCGAAACGGCAGAGAAGGAAATCCTTTATCCCAACTATTATGGATGCAAGCTGCTCAAGCGGCTCATTGGTCATCGTTGGTCAGAATCATCCACAGTACCTGACATCGCTGCAGACCTACAGAGCATCCAGAGAGCCTTAGGGATCGATCCTCTTCAACGTCTCGACTTCATCCTCATTAGAGATGACATGGTGGCCAGAGAGACCCACGGCCTGCCGCTTCCTACAgctctgaaaaactggaggagTACTGTAGAGCAGAGAGCAGTAGATATGATTTATCACATCTATGAGCCCAGTAAGAGGCAGAATTTGCAGATGTGCGTGGGGCCGCTTTTCCACATACTCCTAAACAACATAGAGGACAAAATCCAAGGCGCAACCTCTAAACCTGACAGAAAGCTGTTCCTGTACTCTGTGCATGACACCACACTGATGCCATGTCTCATGGCTTTGGGGGTTTTTGACATGAAATGGCCACCGTATGCAGCTGACATCACACTGGAGCTATACCAGCATCATCAAACCAAGCAGCATTACGTTAAAGTGTCCTACATTGGCcagGACCAAAAAATCCCTGGCTGCAGTGATGTTTACTGCCCGCTGCAGGAGTTTAAGGAGGCACTGGGCGTTTACTCTCTACCTGATGAACGTTACTATGCCCTCTGTGACAGTGTTGAAGACCATCCCAAACACTGACCTCTCATTAGCTTTCAACTCAACCTTGCTCCAGAAAACGCACAGATGTTTTACACCAACCTGGTCACTAGAGCTCAGGACTGTCCTACAACATAGATTCAAGAGTTCATATTAACAAGAGCAATATCAGAAGTCTTATGTTTAAATTGTGAGGTCCTTTCCTATCGTTCAAGAAAACTGGTTTATGACTCGAAGTACACAGCAGATgaacattttcttatttatgcCAGTAGACAGCTTTTTTCACAGATTATCATATTACGCAAGCAAACTTGaatatgtgtgtgaatttgtgCACAACTATGGAAGTTAGTGTGGAATGTCTTGATTAGGTGCCTTCATTTCAGAGTATCAAGTCATCTGAAACGGCTACAGATTTTGCAGAAACCTCATGATTTCAccaatatttgatgttttaacATCAAATTAAGTGCTGTTAAATGGAATATGCAAACAGAAATTGTGAATTTTTTCTTACGCATTCACTACTgatatgcatattaaattattacgaTAAAAATA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0003993 acid phosphatase activity molecular_function

KEGG:

id description
K14395 ACP6; lysophosphatidic acid phosphatase type 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102062 lncRNA downstream 105823 9913086 ~ 9945802 (-) True G69018
TU102048 lncRNA downstream 160029 9890651 ~ 9891596 (-) True G69004
TU102035 lncRNA downstream 378724 9672572 ~ 9672901 (-) True G68994
TU102028 lncRNA downstream 397058 9654116 ~ 9654567 (-) True G68988
TU102014 lncRNA downstream 399023 9637967 ~ 9652602 (-) False G68987
TU102268 lncRNA upstream 27673 10085433 ~ 10087022 (-) True G69147
TU102250 lncRNA upstream 51215 10108975 ~ 10110243 (-) True G69136
TU102285 lncRNA upstream 60033 10117793 ~ 10172985 (-) False G69157
TU102297 lncRNA upstream 78889 10136649 ~ 10138759 (-) True G69168
TU102283 lncRNA upstream 114009 10171769 ~ 10174858 (-) True G69157
XM_043248247.1 mRNA downstream 58153 9990190 ~ 9993472 (-) True LOC122351281
XM_043248562.1 mRNA downstream 141517 9908191 ~ 9910108 (-) False LOC122351483
XM_043249536.1 mRNA downstream 248033 9677254 ~ 9803592 (-) True igsf3
XM_043249502.1 mRNA downstream 382103 9658403 ~ 9669522 (-) False ttf2
XM_043248260.1 mRNA upstream 2558 10060318 ~ 10070885 (-) True gja5a
XM_043249100.1 mRNA upstream 34590 10092350 ~ 10096244 (-) False LOC122351801
XM_043249099.1 mRNA upstream 34590 10092350 ~ 10096243 (-) True LOC122351801
XM_043249101.1 mRNA upstream 40320 10098080 ~ 10101728 (-) True LOC122351802
XM_043249103.1 mRNA upstream 82533 10140293 ~ 10149241 (-) False srpx
TU102057 other downstream 141447 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1710610 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 1956778 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2033520 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2903005 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 375747 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 375747 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 375747 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 457512 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 622398 10680158 ~ 10686627 (-) False mrasa

Expression Profile