RNA id: XM_043248469.1


Basic Information

Item Value
RNA id XM_043248469.1
length 2666
RNA type mRNA
GC content 0.43
exon number 9
gene id si:dkey-91i10.3
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13777626 ~ 13783452 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttttttccccacatttaatttgtttactcGTGTTCAATTTCAATGACCGAATCTAACTGAACTAATAAGTAAAAAATGAGTCTAGATTATTGCTTTAGTGTGAATTTACTACTTCTACATTCTATTGTACAGGCGTCCATTTActtttccttcagcctgaggATCATTCATTTAACTTTTGGTATGAAAGAGCTTTTGCGTTTGCCAAAAATAGaacctttttatattaaaaatagacaaGCCAGCCCTgcccaatttttatttttttttttaaagttgacGTAACGCATTACTTTCCATGAAAAGTAACAGTTACTTTTTTTAGTGAGTAACGCAATATTATAATGTCAAAAGTAACTTTCCTCGACActgctgaagactggagcaatcgTTGGAACAGCTTCGGACTGGTTTaacacatcaaataaatgcagcctcgacTTTTCTCAAAAGTTTTCACTGACTCTGTGGTATACGTGAAGTAGCGGTAATAACGCTGGAGACTTCGACGGAATCTCAACTGCAGCATTCACCCACGATAACAAGAGAGTTTACTCAAGTTCATTTGCAGGGGAAGAGTCTCTCTTGGCACAGACTACCATTACGAAGAAAAATAGCTCACTGCTGTATCAGGACTATTGTACAGACTGTGCTGGGGACAGCGAGAGTAGACATGTTTTCCAATTCACTGCTGAGAACTGGATTCTTTTTATGCAAGCGGGACTACGGAGGAATAAAATGCCTCACGTCGGTATTCTGCACTCGGACGACTAGTACGCTAATAGGTGGCGAGAAACAAAAAACCATGGACGACTTGCACGGTCCTAGCTTTCTGACATCCTTATACTGGCTCTTCGGGAAAGGTTATTTTCAAACGACACATCAACTGCAGATAGAGCACAGCAAAATCTACGGCCCCCTTTGGAAGTCCAAATACGGACCGCTGGTTGTTGTCAATGTGGCCAATGCAGACCTCATAGAACAGGTTTTACGGCAAGAGGGTCGCCACCCCATTCGTACTGACATGCCCCACTGGAGAGGATACCGAAAACTCCGCAATCATGCCTATGGACCCCTCACGGAAATGGGAGCGGAGTGGCAGCGCATTAGAAGCATCCTGAATCCCCGCATGCTGAAGCCCAAACATGTGTCCAACTACACCAATGCTATTAATGGTGTGGTGAGCGACTTTATTGGGAAGGTGGCTAAGCTTAGGACAGCAAAAGGCAATGACCTTATGGTGTATGATGTGGCAGGAGAACTGTACAAGTTTGCCTTTGAAGGAATATGCTCAGTGTTGTTTGAAACTCGCATGGGGTGTCTGAATGATGTGGTTcctgaagaaacacagaagtTTATCTTCTCTGTTGGGGAAATGTTCCGTCTTTCTCCCATTGTGATCCTGTTCCCCAAATCTCTCTGGCCCTACATGCCTTTTTGGAAGCATTTTGTGGCTGTTTGGGACCATCTGTTCAAAGTTGcggATGAACTAGTGCGGAAGAAGATGGCAGAGATTCAGGAAAGGGTGAAACATGGGCAGCCAGTGGAGGGCGAGTATCTCACGCACCTCCTGATCAGTGAACAGATGTCCTTCACTGAGGTTTTGGGAAGCATTACAGAGCTTCTGCTGGCAGGAGTCGACACCACATCAAACACTATTTCCTGGGCTCTTTATCACTTGGCACGGGAGCCAGAGATCCAGCAGAAGCTGTATGAGGAGGTTATCAGTGTCTGCCCAGATGACAAAGTGCCCTGTAGCGAAGACATCACCAGGATGCCACTGCTAAAGGCCGTTGTTAGAGAGACTCTTCGATTGTATCCCGTGGTTCCTGGGAATGCTCGCGTCGTTGCTGAAAGAGAAATAGTGGTGGGCGGCCACCTCTTCCCTAAAAATACACTTTTCCACCTCTGCCACTTTGCAGTGTCCTACGATGAGAAGGTGTTTCCCAATCCCTTTGCCTTCCTCCCTCAGCGCTGGATCCGGGAAGAGAAGCAGTTAAACCAGCATCCCTTCGGGTCTGTGCCGTTTGGCTTTGGCATCCGTGCGTGCCTGGGCCGCAGAGTGGCTGAACTGGAGATGTACCTCCTCTTGTCCCggTTAATAAAACACTATGAAGTGCGTGCAGACTCTTCAGGAAGGACCGTGAAGCCGATCACGCGAACTCTGCTGGTCCCTGCCACGTCTATTGACCTGCGGTTTCTTGATAGGCAAAAAGGGCCAGAGGAGCCACTTAAAGCAAATGCTTCTGTATAAATAACTGTGCACTTCTCAAAGCAGTTTGCTTCTATATAATGCTGTTTACATATTTGATATGACTTACATAGCTgaaaaattcactaaaatgcGTAGCCCTATGGACAAAGTGCTTACTAATTTACACTGCTtgacataaaaaagcatttttatttataataactcttattttactgttatagATGCCTATTATACAGTGTACTGTAAATGTactaattgtaaaaatatttttatgtaaattgcatgtgaatgaatgtaattgtaattaatgaATTCATGTTAGTATCATATGTAagaaagttaaaattaaatttgtcaGTGAATATGCatgatttttaatgcaatgttttcCTTGTTTTTATCCCAacgtataaaataaatgaataaaataattttttaagcatacaata

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17960 CYP49A; cytochrome P450 family 49 subfamily A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103589 lncRNA downstream 95487 13679380 ~ 13682139 (-) True G70033
TU103577 lncRNA downstream 102112 13674718 ~ 13675514 (-) True G70027
TU103573 lncRNA downstream 103819 13669803 ~ 13673807 (-) False tmem163a
TU103525 lncRNA downstream 281981 13473140 ~ 13495645 (-) False gypc
TU103479 lncRNA downstream 365187 13411812 ~ 13412439 (-) True G69953
TU103926 lncRNA upstream 32259 13815711 ~ 13816743 (-) True G70263
TU103938 lncRNA upstream 51794 13835246 ~ 13835699 (-) True G70271
TU103939 lncRNA upstream 53858 13837310 ~ 13837600 (-) True G70272
TU103987 lncRNA upstream 75544 13858996 ~ 13859401 (-) True G70290
TU103976 lncRNA upstream 76331 13859783 ~ 13866148 (-) True G70288
XM_043249524.1 mRNA downstream 12300 13760324 ~ 13765326 (-) True mmadhcb
XM_043248515.1 mRNA downstream 83439 13684985 ~ 13694187 (-) True LOC122351432
XM_043249058.1 mRNA downstream 106144 13642303 ~ 13671482 (-) True tmem163a
XM_043248888.1 mRNA downstream 202672 13515688 ~ 13574954 (-) True cntnap5a
XM_043248889.1 mRNA downstream 262142 13513602 ~ 13515484 (-) True LOC122351673
XM_043248470.1 mRNA upstream 333 13783785 ~ 13787128 (-) True eaf2
XM_043249528.1 mRNA upstream 37947 13821399 ~ 13823785 (-) True tsn
XM_043248863.1 mRNA upstream 112319 13895771 ~ 13912943 (-) False rif1
XM_043248404.1 mRNA upstream 130422 13913874 ~ 13921597 (-) True tnfaip6
XM_043248526.1 mRNA upstream 142461 13925913 ~ 13961097 (-) True itgb5
TU103524 other downstream 281981 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 281981 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 791648 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 1039455 12738044 ~ 12738171 (-) True LOC122352189
TU103144 other downstream 1065802 12708631 ~ 12711824 (-) False LOC122351186
TU103924 other upstream 24370 13807822 ~ 13813327 (-) True G70261
TU103993 other upstream 154807 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 413027 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1519651 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1606397 15389849 ~ 15399437 (-) False tmtc4

Expression Profile