RNA id: XM_043248485.1


Basic Information

Item Value
RNA id XM_043248485.1
length 4792
RNA type mRNA
GC content 0.42
exon number 3
gene id tent5c
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14783457 ~ 14789290 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCacttcagccaatcacaggctTCGCCCGGCGCATTGATACCAGCGAATAGAACGCCGTATGTTTTTGAATTCCATATAGAGCCTTAGTCCATAGATGCCTTGTGTCGCAGAGCTTTAGCGTGGGACGAATGAACTGAAGCTCTGGCGTTTGACGACTGAACGGATGGATGGAGGTGCTGGTGCGAAACCTTATTTGACATCCACTACTTTGTGCCGACCACGTTGCTGAGCACTTCAAGTGGATTTACTGAGAACAGAAACTGCATAAGTGGCAAACATGGCCTCAGCTTCATCCAGCAGTGAAAGTGAGTCGCAAAGTGTGCTTACCTGGGAGCAAGTGAGCCGCTTGAATGACGTGCTGACGGAGGCCGTGCCAGTTCACGGACGAGGAAACTTTCCCACACTGGAGGTCCGTCTGAAGGATATCGTCCAGATGGTTAGGAACCGTCTGGAGCTGAGGGGCATTATGGTCAAAGATGTCCGCCTGAACGGCTCGACCGCCAGCCACGTGCTGGAAAAGGACATTGGCTGGAGCTACAAAGACCTGGACATCATCTTCAGGGTAGACCTTCCTCGGGAAGAGGAGTTCCAGCTCATCAAAGATGTGGTTTTGAGCACTTTGTTGGACTTTCTACCAGAGGGGGTGAACAAGGAGAAGATCACTCCCATGACCCTGAAAGAGGCCTACGTCCAGAAGCTGGTCAAAGTCTACACAGAGCAGGACCGCTGGTCCCTCATCTCGCTGTCAAACAACAATGGCCGCAATGTGGAACTTAAGTTTGTGGACTCGATCCGGAGACAGTTCGAGTTCAGCGTGGACTCCTTCCAGATCATTTTGGACTCAGTGCTGTCGTACTATGACTTCTCAGAAAACCCCATGTCTCGGCACTTCCACCCTACCGTGGTCGGGGAGAGCGTGTATGGCGACTTTGCAGTGGCTCTGGACCACCTCAGGAACAAGCTCATCGCCACCAAGCGGCCGGAGGAGATCCGCGGAGGTGGTTTGCTCAAATACTGCAACCTCCTGGTGAGGGACTTCAGGCCCACGGACGAAGACGAGTTTAAGGCCTTGGAGCGCTACATGTGCTCCCGTTTCTTCATTGACTTTCCTGACATCGGTGAACAACAGCGCAAACTGGAGACTTATCTGCAAAGCCACTTTGTCGGTGAGGAGAAGAACAAGTACAACTACCTCATGATCCTGCGAAGGGTCGTGAACGAGAGCACCGTGTGTCTCATGGGACACGAGAGGCGGCAGACGCTTAACCTAATCTCCCTGATGGCGTTTCGCGTTCTCGCTGAGCAGAACGCCATACCTGATGCGTCCAGTGTCACCTGCTACTACCAGCCGGCTCCGTATGTCAGAGACCTGAACTTCAACAACTACTATGTGGCCTCTTGTAACCAGTCCATTCCAACTTGGTTGCCTTGTAACTAAGACTCAAAGATgcttattcaaaaacaaaatcctcGAGTTGGCCAGAACGCAGGATATTTGGCCGTAAGGGATGTTTCCCTCTGTAGACATAAaggatatttaaaatgattagtgtttccttttttttttttttttttttttacttttaattccTTCTCTGCAGAGGTGCCAAGACATTTCTGATTCAAAGTGAtatattttagtgatttttttttttttttttctttttttatttaatattctaaagTTTCAGATTTCTTTGTTCTCATCTCTGTCCCTGACCCgagagattattatttttttccatattgaAGAGAAACTATTCCCATAGTGCCTTAATATATTCTAACCTTAAAAAGGAAGGAAAATGCATATTGggacaaattaatatattttcctgtgtgttacaaaataaaaaggccaaaaaaataaataaataatgttcttaGAAAtttgaaggagaaaaaaaaaagacaaaatttgCAAGAAAAGATATGAAAAATGTGAGCACAGGTGAAATAATAGGTATTTTAGGACTAAAGTTATCaggagtttttgttttgtttttggtacaCTGGTGGGCAGCTAAATTCTTTTTGTTCTCAAATAGAAATGTGAACAGAATAATGTTAAAGTATTCATAGCAATGTGCTTCAGATTGCTGTGTGAATGAATACTGAAGGCTTTTGTGTTCCACCGTACGTTTTTGAGAATTTGTCATTTATAAACCGATTCGGTCTTGCCAGTTACATCTTAGGTGAGACCGTGATTGAATTTGGTTGCGGCATGTACAAAAAGATGCTTTGTCCTTTTCCCAGCAGTTCAGAGcagttaaacagtccatttttaTGAAGATTAATGAAGATCCTCTGCTCTAGTCGTTAAACCTTCCTTCGTCTCTTATTaatattgtgtttgtgtttaaatggGACGGAGAGGTCATGCTTGTCCATACAAGGTTCAGCTGTTGGACGATCTGTCCTCCTGAGCTTTTTGCGGCCATTAACAGACTTAGCACTGCCTCGTGTAACAAGACCTCCAGCTAACAGCCTAGCCAAGCCAAATGGTGTCGCAGCGCTCTAAAATTATCCCTTCCTGCGCCTCCCGGGATGTGCCTTGAATGGACAGCATGTGGGGTGGAATTTCTAGTGGGGCAACTGTCTTTCCTATGCTTCTGACTAGTGTCACTGTAGATGAGGAGAGGACTCTGGCATGTCACGAAGCCTTTTCTGGTAATTGAGGTCTGGGAGGGGTTGCCGTAGCTGAAGGATATGCCCGTGCTCCTTTAAATGAACGTAAAATGCATGTCAGTGTGGATTCCTTTCCAGTTTTGGATCTAATCGATGTTGCTGCTCTTGATCTTTATTGGGCTTCGATGTCTCCTGTCTTGGTTCTTTGTCAGTTAACTTGATGTTATTGCTTCAAGGCAAGTTGCAGTCGTCAGTTGGGTTAAGCTagttccatgtttttttttttttttgtacgttaGACAGTATTTAATTATGTGTCTGAACCTCCCCTCCCCCCCTTCATGCCCACGTGTAGTTCTCTTTCTGACATTCGTCCATCCAGAGTGGGGTAGTACTCTGTTAGCTGCTCTTACGTAATGGCCGACAGCTGCCCCCTGCCCCTCAGGTTTCCTCTTGGCCTCGCTCACGCGCCACAGCTCCTGCTGCTTCAGCTTGTACGAGCACATGCGCTAGATAACCATGAGAGCCACGTTCCTTCTCTTATCTGCGCTCCCAGACTTCTAGGGTAAAGAGAGAAGGGTCACATGGCCTCTCATTCAGTGGGTTACACCCCAAAGCGCATTGAGCTGGATTGGATTTTTGCTTGCacgttgtttttttgtattttggctcaactttttttttattttttttttcagtatttttgggGCATGCACACTGTGGACCAATGTTTCAACCAGCAACACAGCACACATGTGCCTTTTCTGTGATTAACCCATTTAGAAAGTGAAGACGCTGTAGCTCATCCTCTCTGGTTTCAGAATAATTTGGTGCCGTTAAATTTTTGCTAGTCCATTAAAAGTGTGAAGGATGAATGactgcgcttttttttttttttttttttcctttttctttgtcgctcctttttttttctaattgtaGTTGTCTAGTCATTCCAGTTATGAATCATTTACGCCTTTTCACCATCACCCTCCTAACCAAAGCAAGTACTGTGTACTACACAGCATTCTTAAAATCCGAAAGGCCGAATTAAGAACCCATGTCAATGAATGCACTTTACAGGCCTTATCATTACTCCAAAGCTAGTCATCGTCACAAGCTATAAggtgcccttttttttttttttttttttttttttttttttaatgggggCGTCTCAGGGACATGATAAAGGGCTACAGTGTGTCTTGAGGATAGCTAAACTTGTTCAGCCAACTTCCTGCAAAGTGAACCCGTTTGAAAAGCATCGTATTACTAAGCaatttagaatatataaaatctacACATCAGGAACAAGTGCTTCTGTTTCAGAactggttttcttttttgtgtgtgaaagagttTGTGTTATCTATAGTGGCTGGCCAACAGAATCTCGCCTTAacctgtcttgtttttttttttttttttttttttttttttatttattttttttttttgatcatgtGTGAAAACGAAAAGAAAcatgcctttttgttttgtgcgtTTTATCTTGTCCAGATGCACTTCACATAGATAAGGCCTGGTGTGATGAGGCTTGGCTCATTTCCTTTTTGAAGTCTGTGTAAAGTTTCTTGAAAGGGAAGTGTTAAAATGGGAAAACATGCTTTTGTGTTAGTATTcacattctgttcttttttattttctttgtctcCTTGTCAGCTGTAATTCCATATTCCCCAGTGTTACCCTTTATTCAATAGACAAAGGTGTTGGAGCTTTTTGTAACGCAGCTCTGAAAGCATCTGTAACTGTGTGTACGGGGAGATTTATTGGATTTGGACATGCTTGTCTAAAGTGCAAGTCTTAATGATGATTGAGGCCTTTTTGAAGCCCTTTTGCAATGTTGCAAGAAGAGTTGTGGATTTCAGCaggttttgtttactttttttttttttttgatttatttgtcttgtttgtctGTTCTGATGTTAATGATTGtgagttcaaaaaaaaaaaattaagtgaaatgGAAGTCGcactattattttgaaatagttaTGTCGGCGTGGTGATTTGATGTAGATTCATTGTGCCATTTTGTTTCTCAGCACTTTTACCTCACTATAAGTTTCCTTTGGCTGGAGTTGAAAATAAGGAAAATGTGTATCAAGGGGAATAATAAAGTATTGAAAGCCCA

Function

GO: NA

KEGG:

id description
K23034 TENT5C, FAM46C; terminal nucleotidyltransferase 5C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104140 lncRNA downstream 188115 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA downstream 188115 14594424 ~ 14595342 (-) False G70396
TU104132 lncRNA downstream 193182 14589858 ~ 14590275 (-) True G70393
TU104117 lncRNA downstream 220465 14477332 ~ 14562992 (-) True G70382
TU104075 lncRNA downstream 410783 14363039 ~ 14372674 (-) False LOC122351495
TU104213 lncRNA upstream 127510 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA upstream 127510 14916800 ~ 14918840 (-) True G70438
XR_006251854.1 lncRNA upstream 147834 14937124 ~ 14942863 (-) True LOC122352110
TU104296 lncRNA upstream 186122 14975412 ~ 14981853 (-) True G70494
TU104307 lncRNA upstream 224067 15013357 ~ 15273029 (-) False G70503
XM_043248482.1 mRNA downstream 24871 14749258 ~ 14758586 (-) False wdr3
XM_043248481.1 mRNA downstream 25248 14749258 ~ 14758209 (-) True wdr3
XM_043249049.1 mRNA downstream 162548 14614726 ~ 14620909 (-) False hao2
XM_043249050.1 mRNA downstream 164406 14614726 ~ 14619051 (-) False hao2
XM_043249052.1 mRNA downstream 164413 14614726 ~ 14619044 (-) True hao2
XM_043248895.1 mRNA upstream 6141 14795431 ~ 14862092 (-) False man1a2
XM_043248891.1 mRNA upstream 6141 14795431 ~ 14862092 (-) True man1a2
XM_043248894.1 mRNA upstream 6141 14795431 ~ 14862026 (-) False man1a2
XM_043248126.1 mRNA upstream 79469 14868759 ~ 14874692 (-) True trim45
XM_043249517.1 mRNA upstream 86202 14875492 ~ 14877656 (-) True vtcn1
TU104031 other downstream 529681 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 843589 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 970130 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1287812 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 513813 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 600559 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 982131 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2027850 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2027850 16817140 ~ 16823775 (-) True G70986

Expression Profile