RNA id: XM_043248520.1


Basic Information

Item Value
RNA id XM_043248520.1
length 2429
RNA type mRNA
GC content 0.48
exon number 23
gene id slc15a1a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4860892 ~ 4869233 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacacacacgttcacacactTCCAGTATGCCAGACGAAAAGATGGACGAGaccaagaaaaagaagaaaaagACGGCTGAGTGCTGTGGATATCCAATCAgcattttctttattgtggTTAATGAGTTCTGCGAGAGGTTTTCCTACTATGGCATGCGAGCTGTGTTGGTGCTGTATTTCCGCTATTTCCTGCTTTGGGATGATGACCTTGCGACCTCCATCTATCACGCTTTTGTGGCGCTGTGCTACTTGACGCCCATCTTGGGCGCCATCATTGCCGATTCCTGGCTCGGGAAGTTCAAAACGATCATATACCTGTCCATAGTGTACGCCATCGGCCAGGTCACCATGGCCGTCAGCACCATTCATGACATCACGGATACAAACAGAGACGGCACGCCGGATAACTACACCTTCCACATCGCTCTGTCCATGCTGGGTTTGATCCTCATCGCTCTGGGCACTGGGGGAATCAAACCATGTGTGGCTGCATTCGGTGGCGATCAGTTTCAGGAACATCAGAGTCGCCAACTCAACACGTTTTtctcagtgttttatttgtgcatcAACGCAGGAAGTCTGCTTTCCACACTCATTACGCCTGTTCTCAGagCGCAGCAGTGTGGCATACACACTCAGCAGCAGTGTTACCCTCTGGCTTTTGGGGTCCCGGCCGCTCTCATGGTCGTATCTCTGGTGGTGTTCATTGCTGGAAGTGGCATGTATGTCAAAACTGATCCAGAAGGAAACATTATGTGGTCCGTGTGTAAATGCATAGGGTTTGCCATCAAAAACCGTTTCAGGCACAGAAGCAGCAGGTATCCAAAGAGGGAGCACTGGATGGACTGGGCCGATGAGAAATATGATAAACTTCTTATCGCTCAGATAAAGATGGTGTTGAAGGTGTTGTTCCTCTACATTCCTCTGCCCATGTTTTGGACCCTGTTTGATCAGAAGGGCTCCCGCTGGACTCTCCAAGCCACCACCATGAGCGGAGACTTTGGAGCATTCATCTTGCAGCCAGATCAGATGCAGACTGTGAACCCCATCCTGATCCTGACCCTGGTGCCTATTATGGACCGGTTAATTTTCCCTCTCATCCAAAAGTGTGGCCTCAATTTCAGCCCTTTGAAGAGAATGACGGTTGGCATGCTGTTTGCTGCCATGGCGTTTGTTTCTGCGGCCCTAGTCCAGATTGAGATCGACAAAACACTGCCGAATTTCCCATCGTCCTCTGAGAGCCAGCTGAAGGTGGTGAACATGTACAGCAGCACACTGAATGTGACCATCTCACCCAACGAACCTCTTCTGATAGAGTCCTTTGGGagCAGTGCAGAGTACGTGACGCTCGACCATCAAGACATCACCGTGTCCTTGAACACCACTCCTGTGATCACTAAAGCTTTCAGTTTAATCAAAGGGGGGCGCCAGACCCTGATCATTCCCTCCGACCCAGCCATCATGTATCTGAAAGAAGACGTCAAGTCCAAACCAAGGGAAGGAAAGAATGCCATTAGGTTTGTGAACGGCTGGACAGCAGAACTGAATATCACTAACCTGGATTCCATCGAGCCATCAGCCACTACTAACTACACGCTGGTCAATCAGGGGAAGCGGGATTTCGTGCTCAAACATGGTGAACAGTGGTGTGAGTTTTCCCGTAAGTTTGGATTCGGTGCTTCATACACCTTCCTCATCCCCAGCGACGTGTTCTCATCTGAGTGCAAGTCTATAGTAGAGGTTGAGGACATTAAGCCCAACTCGGTCCACATGGCTCTGCAGATTCCCCAGTACTTCCTTATTACTACAGGAGAGGTCATGTTCTCGGTCACTGGCCTGCAGTTCTCATACTCACAGGCTCCTAAGAACATGAAGTCAGTGCTGCAGGCCGGCTGGTTGTGTACCAACGCCGTGGGAAACATCATTGTGCTGATTGTGGCAGAGCTGGGAAAGCTTCCCAAACAGtggGCAGAGTATGTGCTGTTTGCGTCGCTGCTAGTGGCTGTGAGCATCATCTTCTCCATCATGGCTTATTTCTACACCTACATAGACCCAGCTGAGATTGAGGCCCAAATCAAGAAACAGCAGGGACTCGAGCCAGAAGAGACAGAGAAGGGGGCGCTAGAAATGGAGGAAAAAGATGAAGACCAGAAAAATGAACAGGAGGTCAAACAAACCAAGATATGAGAGATTTGTGAAGATTATGCTAATATCTACTTTAGtgccatatttattaaaatacttataAATGATGATATTTTCATCCATCGTTGTTAAAATCATTGTCACCGTTGGGTGAAAGACCCCCACTTAGTGAATCAGATGTagcaagaaaaatgttaaaactttcTGTCGTGATATCTTTAGGTATGGTTTATGATCCAGATGGACTCTGGttagtgttttgtgtgtgatttgttGCATCT

Function

GO:

id name namespace
GO:0006857 oligopeptide transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14206 SLC15A1, PEPT1; solute carrier family 15 (oligopeptide transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100187 lncRNA downstream 224550 4636010 ~ 4636342 (-) True G67747
TU100185 lncRNA downstream 242024 4615858 ~ 4618868 (-) False pde11a
TU100165 lncRNA downstream 305142 4552424 ~ 4555750 (-) True G67730
TU100168 lncRNA downstream 309017 4551237 ~ 4551875 (-) True G67733
TU100138 lncRNA downstream 433246 4427288 ~ 4427646 (-) True G67712
TU100380 lncRNA upstream 75370 4944603 ~ 4954082 (-) True G67847
TU100466 lncRNA upstream 136061 5005294 ~ 5006781 (-) True G67904
TU100474 lncRNA upstream 157811 5027044 ~ 5027597 (-) True G67911
TU100476 lncRNA upstream 181196 5050429 ~ 5051292 (-) True G67913
TU100488 lncRNA upstream 219949 5089182 ~ 5089393 (-) True G67923
XM_043248522.1 mRNA downstream 1226 4852949 ~ 4859666 (-) False stk24a
XM_043248521.1 mRNA downstream 1226 4852949 ~ 4859666 (-) True stk24a
XM_043248523.1 mRNA downstream 1226 4854622 ~ 4859666 (-) False stk24a
XM_043248524.1 mRNA downstream 2253 4852949 ~ 4858639 (-) False stk24a
XM_043248581.1 mRNA downstream 37927 4792424 ~ 4822965 (-) False LOC122351499
XM_043248849.1 mRNA upstream 959 4870192 ~ 4921556 (-) False zmp:0000001200
XM_043248845.1 mRNA upstream 959 4870192 ~ 4921556 (-) False zmp:0000001200
XM_043248844.1 mRNA upstream 959 4870192 ~ 4921556 (-) True zmp:0000001200
XM_043248851.1 mRNA upstream 959 4870192 ~ 4921555 (-) False zmp:0000001200
XM_043248850.1 mRNA upstream 959 4870192 ~ 4921555 (-) False zmp:0000001200
XR_006251761.1 other downstream 37930 4794951 ~ 4822962 (-) False LOC122351499
XR_006251762.1 other downstream 37930 4794953 ~ 4822962 (-) False LOC122351499
TU100077 other downstream 739053 4120548 ~ 4121839 (-) False G67668
TU99607 other downstream 1667952 3189847 ~ 3192940 (-) False G67358
TU100414 other upstream 90484 4959717 ~ 4983747 (-) True G67863
TU100469 other upstream 141280 5010513 ~ 5014735 (-) False dbi
TU100470 other upstream 141280 5010513 ~ 5014813 (-) True dbi
TU100475 other upstream 159693 5028926 ~ 5029475 (-) True G67912
TU100497 other upstream 236661 5105894 ~ 5108387 (-) True G67930

Expression Profile