RNA id: XM_043248524.1


Basic Information

Item Value
RNA id XM_043248524.1
length 2494
RNA type mRNA
GC content 0.39
exon number 10
gene id stk24a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4852949 ~ 4859666 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACAACGGAAAGTCGCTATAAAGATTATTGACCTGGAGGAGGCTGAAGATGAAGTGGAAGACATCCAACAGGAGATCACAGTCCTCAGCCAGTGCGACAGCCCCTTCATCACTAAATACTATGGATCTTATCTGAAGGACACAAAACTATGGATCATCATGGAATATTTAGGAGGGGGTTCTGCTCTGGATTTGAGATTCAGAGTCCTACGGTTACcatgattttgccaaGTGTGTTCTTTGATCTACAGCTGGGACCTGGAGCTCTTGATGAGTCCCATATTGCCACCATCCTCAGAGAGATCCTGAAGGGTCTGGATTACCTGCACTCTGAAAAGAAAATTCACAGAGATATTAAAGCTGCTAATGTCCTGTTGTCAGAGCAGGGTGATGTGAAGCTAGCTGATTTTGGTGTGGCTGGGCagctcacagacacacagatcAAGAGAAACACGTTTGTGGGCACTCCTTTCTGGATGGCACCAGAGGTCATTAAACAGGCAGAGTATGACTCAAAGGCAGATATCTGGTCATTAGGCATAACTGCAATCGAGCTAGCAAAAGGAGAGCCACCCCACTCAGATCTTCACCCCATGAAGGTGTTATTTCTCATCCCTAAGGAAAACTCACCCACACTGGAGGGAAACCACAACAAAGCTCTCAAAGAATTCGTAGATGCCTGTCTCAATAAAGACCCCAACTTTAGGCCAACAGCTAAAGAgcttttgaaacacaaatttatCGTGCGATATGCCAAGAAGACATCATTCCTGATGGATCTTATCGACAAGTACAAGAgatggaaagaaaaacaggTCCGCGATGAGTCCAGCTCTGATTCTGAATCAGATGATGGTGAAGCATCTGGAGAGTCTGTGGCTGATGACTGGATCTTTGGCACTGTCATAGGACATAAGCCCACTGTGAAACAGAATGGAGtcattaaaaaagaagaagaactaCGCAGAGAGGTTCCAGACAGTAAAAAGGAGCCTTCACCCAAGAGCACAGAGTCTAAGTCCTCTATTATTTTACCATTGATTGCAGAGCTGAAGCAGAAGCAAGGTGTTTATAAGCCGGCGGTGTTAGAGGAGCTGAAGCAGGCCATGCTCCTGGCTGAAGAGGCATGTCCCGGGATCACAGACTCGATGGTGACGGGGGTGGTTCACAGATTAAAGAGGTATTTACAGCACCTGGCCTGCGTTGCTGAATACGTTAGTTGGTGAGAGTCTGATGTTTTCTGCCTCACAGGTTTTCATCTCAACACTGACTGActccctaatcaaacacacctgaaactCCAGGACCTGAAATGGGTGTCAGATAAGGTAGACATATAAAATGTGCAGTGATGGGGGGGGGGTGTTAAGAAACACTGCTCTACATGAAGActcttttctgttgttttcccCAGTTACTTGCTGTCTGTACATAAGTGTAGAACTTATCCTCAATAATATCCTCAATAATTCCTgtaagaaaattacattttagttacaGCCTATAAATACCTCAAAGCTATGAACTAAAATCTGCACATTTGATTTTAAGGGGTCTGTgtattttagctttttgttcTACATAACTAATCTGTGCAATAATCCTTTTGCTAGTAATAGTttgaaaaaatctataatattaaaatcacataGCACTTTATTGCCCTTTAAAACAGttgtaattctttaaaaattgtatttctttttcctaCCCATACGAGGcttatttctatttctgtgGCTAGCCTTAGcttagagggttttttttttttttcaatattcattttccgtgtttttttttctgcatatcATTGTTTTATCACAATGTCAACATGCTCATGTACATTCCTTAGGACCATAAAAATGAAGACCATGGCTCTTTCTAAATCTGTTCCCAGTAGgaacatttaacttaaaaaaaaaataaaaaattcaagagtttttaatatatatttataacttaAATGGCTATCTTAAATGGCAATAAACTTAATCTTTAAATGATCTTATTCGGAGTAAAATCCATGATACAGTTAATTTAGCTGTAAACCATTTTTATTGTCCTTCCTCTATCTGATGTTTAGTTAGAGGACGCCTGGTTGCATCTAGATGATAACAGCATTTTAATGCGTTACATAACAGAAGAGCCTATGGGATTATAGGACTATAAATCTGTGCCAAAGTTCAATTCAGACTAATGTACAACTCTGAGAGATCACCGCTCCTGCTGCTCAAACCCGACTGGTCCAGAAGCCAAATGAATGAGTAACCGTCGAACCAATCCAAACGACCGTAACAACCCAACAAATTCACACAATTTTAATTCTTACATCCAAAAACAAGATCAAAATTTGTCACTCTATATACAGATATTACATACAATGTTTATACacatattacataattttttacacgagaaaaatatacataaaaatgtaaacctttgtatacaaaaaaatacctTAGACAAATTAAAGACCAATAACAAAAGGTGA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0007507 heart development biological_process
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100187 lncRNA downstream 216607 4636010 ~ 4636342 (-) True G67747
TU100185 lncRNA downstream 234081 4615858 ~ 4618868 (-) False pde11a
TU100165 lncRNA downstream 297199 4552424 ~ 4555750 (-) True G67730
TU100168 lncRNA downstream 301074 4551237 ~ 4551875 (-) True G67733
TU100138 lncRNA downstream 425303 4427288 ~ 4427646 (-) True G67712
TU100380 lncRNA upstream 85964 4944603 ~ 4954082 (-) True G67847
TU100466 lncRNA upstream 146655 5005294 ~ 5006781 (-) True G67904
TU100474 lncRNA upstream 168405 5027044 ~ 5027597 (-) True G67911
TU100476 lncRNA upstream 191790 5050429 ~ 5051292 (-) True G67913
TU100488 lncRNA upstream 230543 5089182 ~ 5089393 (-) True G67923
XM_043248581.1 mRNA downstream 29984 4792424 ~ 4822965 (-) False LOC122351499
XM_043248583.1 mRNA downstream 29987 4792424 ~ 4822962 (-) True LOC122351499
XM_043248582.1 mRNA downstream 29989 4792424 ~ 4822960 (-) False LOC122351499
XM_043248535.1 mRNA downstream 61210 4781700 ~ 4791739 (-) True casp10
XM_043248641.1 mRNA downstream 72272 4774995 ~ 4780677 (-) True prkra
XM_043248520.1 mRNA upstream 2253 4860892 ~ 4869233 (-) True slc15a1a
XM_043248849.1 mRNA upstream 11553 4870192 ~ 4921556 (-) False zmp:0000001200
XM_043248845.1 mRNA upstream 11553 4870192 ~ 4921556 (-) False zmp:0000001200
XM_043248844.1 mRNA upstream 11553 4870192 ~ 4921556 (-) True zmp:0000001200
XM_043248851.1 mRNA upstream 11553 4870192 ~ 4921555 (-) False zmp:0000001200
XR_006251761.1 other downstream 29987 4794951 ~ 4822962 (-) False LOC122351499
XR_006251762.1 other downstream 29987 4794953 ~ 4822962 (-) False LOC122351499
TU100077 other downstream 731110 4120548 ~ 4121839 (-) False G67668
TU99607 other downstream 1660009 3189847 ~ 3192940 (-) False G67358
TU100414 other upstream 101078 4959717 ~ 4983747 (-) True G67863
TU100469 other upstream 151874 5010513 ~ 5014735 (-) False dbi
TU100470 other upstream 151874 5010513 ~ 5014813 (-) True dbi
TU100475 other upstream 170287 5028926 ~ 5029475 (-) True G67912
TU100497 other upstream 247255 5105894 ~ 5108387 (-) True G67930

Expression Profile