RNA id: XM_043248530.1


Basic Information

Item Value
RNA id XM_043248530.1
length 3999
RNA type mRNA
GC content 0.49
exon number 16
gene id appb
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17299245 ~ 17315818 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTCGCGCATTCTCACAAAGCACAACCGAGCACAGACGATAGGGGAACACGGAGCAGAAGATCGACACAGAAAACCCTGATCCGCTCGGGACGTTTATCCATCAGGACGTGCTGCGTTTGGGAACACGGCCATGGGTATGGACCGTACGGTATTCCTGCTGCTAATGCTGACGACTCTGTCGCTCGCCATCGAGGTGCCATCGGATGACTCGGTGGGCTTGTTGGCGGAGCCCCAGGTGGCCATGTTTTGTGGGAAACTCAACATGCATATCAACATCCAGAGTGGCAAGTGGGAGCCGGATCCAACTGGCACCAAAGGCTGCATCGGCACCAAAGAGGGCATCCTTCAGTACTGCCAAGAGGTATACCCAGACCTCCAGATCACTAACGTGGTGGAGGCTAACCAGCCCGTCAGCATCCAGAACTGGTGCAAAATGGGTCGTCACCAGTGCCGCAGTCACACGCGCATTGTGGTCCCCTACCGCTGCCTGGTTGGGGAGTTTGTCAGCGATGCCCTCCTCGTCCCAGATAAATGCAAGTTCCTGCACCAAGAGCGAATGGACATGTGCGAGAGTCATCTGCACTGGCACACAGTGGCCaaagagTCCTGCGGCGATCGTTCCATGAATCTCCATGACTACGGCATGCTGCTGCCGTGCGGCATCGACCGTTTCCGTGGTGTGGAGTTTGTGTGCTGCCCTATGGAGGAGCAGAAGGAGTTAGACAGcgaggagcaggaggaggccAACTCAGATGTGTGGTGGGGCGGCGCAGAGGCCGAGTATACTGACGGCAGCATACTGAAAGAACAGGCCCCGACTAAACCTGAGCCTGCTGTGACTGAGGATGATGAGGATATCAAcaatgaggaagaggaagtctGGGATAATGATGAAGATGGTGATGGTGAAGATGATGACGACGAAGAAGATGACGATGAAGACACTACTGATGAACAAGACACCAGTGAGCAGACCTCCAACGTTGCCATGACAACCACCACCACTACCACAACAGAGTCTATAGAGGAGGTTGTGCGAGTGCCGACCGTGGCTCCGAGCCCTGCTGATGCTGTGGATCGTTACCTGGAAGCTCCAGGAGACGTGAATGAGCACACCCGCTTCCAAAAGGCAAAGGAGAGCCTGGAGGCCAAACACAGAGATAAAATGTCAGAGGTGATGAGAGAATGGGAGGAGGCAGAGAGACAGGCGAAGAACCTCCCCCGTGCTGATAAGAAGACCATAATTCAGCGCTTCCAGGAGAAGGTGGAGGCGTTGGAGAAGGAAGCGGCCGGGGAGAGGCAGCAGCTGGTAGAAACCCACATGGCACGCGTGGAAGCTCTGCTGAACGACCGCCGCCGCCAGGCTCTGGAAAGCTACCTTAGCGCCCTGCAATCTGACCAGCCTCGGCCTCGGCAGGTCCTCAATCTGTTGAAGAAGTACATACGAGCGGAGCAGAAGGACAGGCAGCACACGCTCAAACACTTTGAGCACGTGCGAGAGGTGGATCCCAAGAAGGCTTCTCAGATTCGGCCTTTTGTAATGACCCACCTGCGCGTGATTGAAGAACGCATGAACCAATCTTTGGGGTATCTCTACAAGGTGCCGCAGGTGGCTAATGAAATCCAGGACCAAGTGGcATTGCTGATTCAACATGACCAGGCTGAAGTTACCCAACAGCTGTCGTCTCTCCAGAGTAAGATGAGGGTGAGCTACGGGAACGACGCTCTGATGCCCGACCTGCCGGACAGCACCACCCCGCTGGACACCTTGCCACCGGAGCAGGACGGCCTGGGCTTCATCCACCCCGAAAGCTTCAACCAGGCCAACACTGACAACCATGtTGAACCCGTAGATGCCCGTCCAATTCCAGATAGGGGTCTGCCTACGAGACCCgAGATTCCAAAGGTTCGGCTGGACATTGAAGAAAGGCACAACGCTGGTTATGATGTTCGTGACAAGAGACTGATGTTCCTTGCAGAAGACATGGGCTCTAATAAGGGGGCGATCATTGGGCTGATGGTGGGTGGAGTTGTCATCGCTACCGTGATCGTAATCACTCTTGTTATGCTCAGGAAGAAACAGTACACTTCCATTCATCATGGAGTTATTGAGgtGGATGCAGCAGTGACCCCCGAGGAGCGTCATCTCACCAAGATGCAGCAGAACGGCTACGAGAACCCCACCTACAAGTTCTTCGAGCAGATGCAGAACTAAAGAACCACTTCAGACCCCACGCTCCACATCACCCCCAACCATCACCACCGTCACCCCACTGCATCAGGACAGAGAATGCAGACAGGTCCCTCATACACGCAGCTCTGTCACCACGGAGATGAGAGTGGCTTCCATCACCTGACCATTTCATCCAATCGAACGAGCGCTCACTCAGTTTGCACAGAAGCGTGATGTGTCATTGCCGCCCATCCAGCCATCTGTCAGTACGATGGTCCATCTGCGCTCTCCCATGCCTGTCCATCACAGCACTGTGCGGTGAATGAGCCGTTCTCTTTGCCCGTGCTTTCCTTCTTACCCATGATCCTCTAAACCATCTAtagtttgtttttgggtttttttttcttctctccgctctctctctctctctctctctcttggccGTGTTTGTTCCCCTCCAGAACTTTTATTAAGCGCTTACATCTCCTCCTCTTTTGTTTGCACGTTTCCTTCCTCCTTCTCCCTCCTTCCTTTTTCCTGGGCACTCAGATGATGCGGTGCTGTGTTTGGCTACATGAGGCTCCAACCGCAAACAACCAGATGCCGAATAACGTACTCATTGTTAAACTTTCCATTcagggttgttgtttttttttttctggaaaaaaagcaaaaaaatatatattaaaaaaaatccatacattaaaaaaaaatgtaaaaacaaacaaaaaacatttacagagataagaaatatgaatgtttgtttttattttgtgtgtaatatgtatTGAATTAAGGCAGAAACTAGCTGTATCTATATAGTGCATGGCAATTTTAACAGAGAGATGGTTTCTGGATCCAGTTGCGCAGACTTTGACCTCTCTCTTATGTAGAGATTTTAGCTGgattgtacattttattgtcTTCTTGtgatcacattttaaataagtgagaaaaaaaaaatctgcttggCTACATCGTCACAGGGACATGCTTTAATCGaagtgtgctttttatttcttttggacCATGCCACGCACACTTAAATAGTTGCATGGGGCTGGAAAAAGATGTATGTATTGTATTATGAAGTGTAATATTAGCCCACGTTTTGGTTCGTTAacgttttaacattttcttttcgGGAAGGGTCTAGACCCTTTTTGCCTCATGAAGTTTTATTCCATGTCGGGATTTGGTATGGGGCCGGGATTAGGGAAGGGAGGTATGGAGCGGTGGTGGGATTTTGCTTCAGAAATGGCCACCATTTTTGGATTGTGTGATTTTTGTCCCACTTTCCCCTCTTTGTATCCCCAGTGTCTGTGATATTCACGAACACATTTTGGGACAGAAACACCTCACCTTCTCCCCCTCTTTTATTGTTTCACTGAAGTATCTCATAGCACCTTACAGGCCAGAGCAGGTAAGAAGGAACGGGTGGatgagaaatattaaatgtaacgCAGTCTTTTGAAGTGACCTCTCcagagttattttaaaagcgCCGCAACGTTGAAGGAAATTGTGAATTGTTGTATAATACATTGTATGAGACACACAGCCATTAAACGAGTCAAACATTGTGCAGTTATGTCACAGTGCACACTGCTCATTACGTTCCTGTATAGAATTACCTTAGCTCAAAAATCTGGTGTTGTGCTGATTAGTGGATGCTCTGAGGTGAGTGTCTGTGGTCAGTAGGGAACAAAGAAAGCTCTTTCTGTGACTTTTTCCTTCAGTATCTATTCAAACCATTGGCTTAGAACGGGAAAAGCTTTCTACAACACTGTAACCCATGAATAAAGTTTTGAATGTACATACAAA

Function

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0007417 central nervous system development biological_process
GO:0060026 convergent extension biological_process
GO:0001944 vasculature development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105257 lncRNA downstream 2095 17212876 ~ 17297150 (-) True G71117
TU105081 lncRNA downstream 379931 16917224 ~ 16919314 (-) True G71035
TU105039 lncRNA downstream 409816 16886805 ~ 16889429 (-) False cd247l
TU104975 lncRNA downstream 431723 16866492 ~ 16867522 (-) True G70981
TU105028 lncRNA downstream 432823 16866178 ~ 16866422 (-) True G71006
TU105275 lncRNA upstream 23305 17339120 ~ 17339530 (-) True G71131
TU105278 lncRNA upstream 24730 17340545 ~ 17340915 (-) True G71134
XR_006251856.1 lncRNA upstream 27901 17343716 ~ 17351712 (-) True LOC122352115
TU105286 lncRNA upstream 48372 17364187 ~ 17368255 (-) False ncam2
TU105295 lncRNA upstream 276149 17591964 ~ 17592183 (-) True G71149
XM_043248272.1 mRNA downstream 100854 17196411 ~ 17198391 (-) False si:ch211-160b11.4
XM_043248269.1 mRNA downstream 100855 17196411 ~ 17198390 (-) True si:ch211-160b11.4
XM_043248271.1 mRNA downstream 100913 17196411 ~ 17198332 (-) False si:ch211-160b11.4
XM_043248274.1 mRNA downstream 100925 17196411 ~ 17198320 (-) False si:ch211-160b11.4
XM_043248270.1 mRNA downstream 100939 17196411 ~ 17198306 (-) False si:ch211-160b11.4
XM_043248035.1 mRNA upstream 48378 17364193 ~ 17521559 (-) False ncam2
XM_043248033.1 mRNA upstream 48378 17364193 ~ 17521559 (-) True ncam2
XM_043248036.1 mRNA upstream 57346 17373161 ~ 17521560 (-) False ncam2
XM_043248995.1 mRNA upstream 243713 17559528 ~ 17574374 (-) True zp2l1
XM_043248852.1 mRNA upstream 334160 17649975 ~ 17652121 (-) True dnajc28
TU105258 other downstream 43754 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 475470 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 475551 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1527381 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1899808 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 1253940 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2404683 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2480442 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2566009 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 3173349 20489164 ~ 20503890 (-) False G71938

Expression Profile