RNA id: XM_043248533.1


Basic Information

Item Value
RNA id XM_043248533.1
length 3819
RNA type mRNA
GC content 0.47
exon number 20
gene id zak
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3948018 ~ 3981211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCACAGCCCAGAAGCTGGCGGCTCTGATCAGGAAGAAGTTGTTACACGTGAAATCGGCGCAGCGTGAAACCGGGAATTTCTGAGTCACGAGCTCAGGCGAGATCTTCCTGACCGCTGTCCATCTCTCCGGGGAAGACTGCCAGCGGGGAGAGAAGTGCGTTTCTAAGTGCCATTATGCCATGGCATCTCTGGGCGCCTCCTTTGTGCAAATCAAATTCGATGACATCCTCTTCTACGAGAACTGCGGCGGCGGGAGTTTCGGGAGCGTGTATCGCGCCCGCTGGCTCTCGCAGGACAAAGAGGTGGCGGTGAAAAAGCTTCTGAAGATTGAAAAAGAGGCGGAGATTTTAAGCGTTCTCAGTCATCGAAACATTATCCAGTTTTATGGAGCGATTCTGGAGGCGCCCAACTATGGAATCGTTACAGAGTACGCCAGCGGTGGATCTCTGTTCGACTACCTGTCCAGCGCTAAGAGTGAAGACATCAGTATGAAGCAGATTATGACCTGGGCAATGGAAATCGCTAAAGgCCTGCATTATCTGCACGCCGAGGCCCCGTTTACAGTCATTCACAGAGATCTCAAGTCCCGGAACGTCGTGATGACAGCAGATTCAGTACTCAAGATCTGTGACTTTGGGGCGTCTAAGTTTCATTCTCACACCACCCACATGTCTCTGGTGGGCACGTTTCCCTGGATGGCCCCTGAAGTCATCCAGAGCCTCCCGGTGTCTGAGACCTGTGACACATACTCGTACGgagtgGTCCTGTGGGAGATGTTGACTCGTGAAATTCCCTTCAAAGGTCTGGAGGGGCTCCAGGTGGCCTGGCTGGTGGTGGAGAAGAACGAGAGGCTGACGATTCCCAGCAGCTGCCCGGCCAGTTTCGCCTGTCTGATGAGAAGCTGCTGGGTGACAGAACCGAAAGACAGGCCGCTGTTCAAAGACATCTTGTCCACGCTGGAGTCCATGTGGAACGACAGTCACTTACCTGAGGAGTGCAACACTTTCCTGCACAATAAAGCAGAGTGGAGGTGTGAGATCGAGGCGACTCTAGAACGTCTGAAACGGCTGGAGAGAGATCTGAGCACCAAAGAACAAGagctgaaagaaagagagaggcggTTAAAGGTGTGGGAGAGAAAGCTGATCGAGCAGTCCAACACACCGCTTCTCCCAAACCTGGCCATCCACTCCTGGACAGAGGAACATGTGCATTTCTGGATAGAGCAGATTTTCCAAGgtgatGGAGAGCTGCAGCAGTACGCCGATATCTTCAAGCAGAATCACATCACAGGACAGAGACTGCTGCTGCTGTCCGAGATGGACATGAGAGATCTGGGTGTGACGTCTAAAGGACACATCATTCACCTCAAGaccGAAATTGAGAAACTTACCCACGACTACCTGAACCTGTTCCACTTTCCGCCGTTGATCAAGGACGGTTCGGCCACTGAAGAAGCAGAAGAAGAGTGGAGGAAGACTGTGAATCTGGAGTTGGTGTTTGGATATCACTGGAAAGCAGGCACAGGCCAATCGGACTGCAAATGGAAAATGTATATGGAGCTTGATGGGGATGAGGTGGCAATCGCGTACATCAAGGACGTGACCTTTAACGCCAACAGACCGGATGTGGATGTATTAAAGATGACCAAGCCCCCGTTCGTGATGGATAAGTGGATCGTGGGAATATCTGGCACACAAACCGTTGACTGCACAGTAAACTATGAGGGTAACGTGAGATCTCCTAAGTGTACGAGACACGAGCACAGGGTTCAGTGGAGTCCAGACAGTCAGAGGGACGTGATCAGACCCGTGGAGCTGGTCATTGAGACGGCGCCGGGCATCAGGGAAGGTCACAACAGAAGCAGGTCCAACTCAGGTGTTGATCCCAAATGGATTTACAGTCTGAGAATGAAGCAGTGGAGAGAGCAAGCTGCCCAGGAGTCTACGGGCAAGATGACCCTCCCTCAGTTCCTGTCCGTCATAGGGAGCCAATCATCGTACGCCGCTGCGGTCAGAAGATCGCCCAATCGCAGCCCTCTCACTCCATGGACAGATTCGCGGAGTTCTTCTCCCACCCTTTCCGTCAAACTCTCCACCATCCATCTGGGGTCAAAGGGCAGCAGCCCGTCCAGCACGACGTCTGAGAGCACCCCGGAGCGAGAGCGGCCCCCTAGTGCCGGATCTAAACACAACTACCACAGAAAAGCATACTATGACAACACGTTTAAAATCAacggaggaggaagaggagaagcgGAAACCAGAAGGTTTAATCAGACGTCACAGAGAGGACCCAGAAGCTTCCAGCATGCTGGGCGCCCccgaaacaacaacaactacgTATCACCATCTTACCACCAACGGCCGATACCGGGGATGTCAGTCATCAATGAAGGAGTGAAGAAGAAAGCGGCATCTGAGGACGCCGTGTCTGGTGATGGGGACTGGATtaaagtagaaagaaagaagtctAATAAACAGGAACATAAGCATCAGGAAGTGAGGCAAGGTAGAGGACGGCCGCGCAGAGGAGGGAGGGGCGGTGGGCGTGGCCGAAGTTGAGCGCTTATAAAACGCTGCACCGTGTCCTATCTACACGAGATGCGAAAACATTACAGCGGCAAGCGATTTTTGATGAGACGGAATCAATCAAATATCGCAGCCAATCAAAAGCGCGTGTGGGTGGGCTCTCTGTGGAATGCGTttataattcttaaatattaaatctttttaGGCTATTTTATAATTACTGAGTGACTGATACCGTCTTTGTAAGGGAAAACGCTTGTCGgttcttcttgtttttgtcCCACCTAGCCATGACTCGTGAAATTTCTGATTTACAAATGGTTTCTATTTCACGTTGTGGCCAAAACAACATACAAACTATATGTCAGTAGATAATCTGAGGTTATTATGCGCTTTATTGTGAGTTCGACTATCATCTTGCATGAGCTTATAGCCATACTGAAAGCAACAACAGATAGTTCAcctcagattttgaaaataaatgaaaccaaacatGGACATTAAAACTGCAAATACAATGCGAACCAACAAGCGTTTTCCATTACAAAAAttggtaaaaaatgtaattatgttacAAATGTTTGATATTTACGAATTCGATTATAAACTTAACCATGTGCAGCGTGCTTCCAGAGAAAGCCTGCCCACACATGCTTTTGATTGACTGGTGTTTGATTGATTCTGTTGCATTGTTTTGTAGCATTATATCTAGTGTGGAAACCCGAACCACTTGACGCTGGAATCTTGTCACGTGGCATGTTAGGACACAGTGTTAGAACGGGTCGATAATGAATCACATTTGATCCACTGTATAAGGGCTGGTTTATAACCAAAGCACTTAACCCCAGTTGTTCCTAGGGGATTTCATAAAAGCGTCTTCTGAATTGACACTGATAAAGGGTAAAAATTCACCACGAAATGGATATACTGATCTTAAACGtcataaattatgcattttctgaaaaaaagagctAATCTCTGCTCTTTCATAGTTGACGTTGCCTTTCCAGGTTTAACTTGAACATCTTTTGTGGTcaatgattttgtttcttttaaaaaggtttcTTATGTATTTGAACTATGCTagacatttaagtaattatcATAACAGAGGACTTTTTCTATTAAATCCTTTCTGCATGCAAGGCAAACGtggttttattgttatattttattatggaggactatttcatttatatgatattaaagatttatttattatattggtGGGATTTTAAACTTTTGTCAATTTAtaagatattaataaaatataaacttgaAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99748 lncRNA upstream 118246 3828991 ~ 3829772 (+) False G67448
TU99751 lncRNA upstream 118401 3828823 ~ 3829617 (+) True G67448
XR_006251706.1 lncRNA upstream 301404 3642961 ~ 3646614 (+) True LOC122351161
TU99708 lncRNA upstream 328712 3607394 ~ 3619306 (+) False LOC122351601
XR_006251781.1 lncRNA upstream 338518 3606570 ~ 3609500 (+) True LOC122351601
TU99916 lncRNA downstream 2958 3984169 ~ 3985934 (+) False cdca7a
TU99977 lncRNA downstream 57385 4038596 ~ 4038822 (+) True G67604
TU99979 lncRNA downstream 83426 4064637 ~ 4064961 (+) True G67606
TU100026 lncRNA downstream 175445 4156656 ~ 4157963 (+) True G67637
TU100030 lncRNA downstream 181145 4162356 ~ 4165072 (+) True G67641
XM_043248084.1 mRNA upstream 2410 3925891 ~ 3945608 (+) True LOC122351193
XM_043249752.1 mRNA upstream 25466 3913638 ~ 3922552 (+) False LOC122352174
XM_043248310.1 mRNA upstream 37198 3906741 ~ 3910820 (+) True LOC122351330
XM_043248311.1 mRNA upstream 37972 3906741 ~ 3910046 (+) False LOC122351330
XM_043248107.1 mRNA upstream 180481 3760833 ~ 3767537 (+) True stx19
XM_043248534.1 mRNA downstream 135 3981346 ~ 3985962 (+) True cdca7a
XM_043248594.1 mRNA downstream 128439 4109650 ~ 4112225 (+) True sp9
XM_043249288.1 mRNA downstream 139316 4120527 ~ 4127013 (+) False scrn3
XM_043249290.1 mRNA downstream 139316 4120527 ~ 4125447 (+) False scrn3
XM_043249289.1 mRNA downstream 139319 4120530 ~ 4127013 (+) True scrn3
XR_006251861.1 other upstream 25140 3913638 ~ 3922878 (+) True LOC122352174
TU99551 other upstream 751497 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2218623 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 2813029 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 3087862 858680 ~ 860156 (+) False LOC122351650
TU99910 other downstream 316 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 139316 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 159843 4141054 ~ 4222171 (+) True G67630
TU100016 other downstream 235839 4217050 ~ 4220395 (+) False G67630
TU100101 other downstream 429665 4410876 ~ 4413142 (+) False hoxd4a

Expression Profile