RNA id: XM_043248535.1


Basic Information

Item Value
RNA id XM_043248535.1
length 2858
RNA type mRNA
GC content 0.44
exon number 12
gene id casp10
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4781700 ~ 4791739 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACGAAACTAACTTCAGTAAGGAAGTGGCCTAGAGGAGGAGGCGTGTCTAAACACTTAGATATGTCGAGGAGAAAGTAGGCTAATGTTGAAGATAGCTCAAATTTTCACACCGGGAAGGACGAGGCTGCTGTCGGAGATGCAGGCGGGTTTGGAGTTTCAGCGGGTGCTGTTAAAGGTGCAGGAGTCTCTGTCTGTGGATGAGGTGCAGGACTTGGTGTTCCTCTGCTCTGAACTACTGAGTCTGAAAGACCTGAGCTCTGTGAGCTCGGCCGGACAGCTCTTCGGTCTCCTGGAGAACAGGGAGCTGCTGTCCAGGGAGGATCCGTCTCTGCTGCTAGAGCTGCTCAGGATCCTGAGACACAACAGCCTGATCCGCAGTCTGACCTCAGAGGACTTCATGACAACCAACGGCACGACATATAGCCCACAGATCTCTCCATACAGACAGATGTTGTTTGAGCTGTCAGAGTCCATCTGTGAGCAGGACctgaaaaacatcaaattcctCTTGTTTAAAACGCTACCCCGTAAAAAGCTGGAGAAGGACATGACGCTCTTGCAGTTGTTTCTGGAgatggagaaggaggccctTTTGGATGACAATCATTTGGACGTCCTGCAGAAAATTATAGCAGAGATCAACCCAAGATTAGAAAAAAGAATCATTCAATACAAAGAGAAGAGTTGTGAGAGTGGAATGGTTATTGCTCAGGAGATCGGGGATATTACTCCAGCGTTGTACTCACCTGCTCCGCCCTCGTCGCCGACGTCACTTACATCAGTTGACAGAATGGAGGAGCGGGTGAACAGGCTCAGTCTGACCGAAGATCAGAGCCAGCACTCAGTGGTGGAAAACGAGAGCTTAAAAAAGTGCTTGATTGGAACCCAAAAGCCTGAGACGCTGCAGCGAGAAAACAGAAGATCAGAGTGGAGATGGAAAGCAATCACCGAAGACGCAGGCTACTACTTCTGCAGAGAAAGCACTTCCTGCTACAGGATACAGTCATCAGAGAGGAAAATAAGATGCATCCAGCAGTATGAGATGAAGGGGGACAAGAGAGGAACGTGTCTGATCATCAACAACTGTGACTTCAAAAACAGTCTACGGAAAAGAGAAGGAACAGACATTGACAAAAGAAGTCTAGAGGTCGTGTTCCAGTGGCTGGGCTTCGAGGTCCTGGTCAAACAGAACTGTGAAGGCCATCAGATCCTGCAGGAGCTGAGGGACCTGGCCGCTCGTGACCACACGTCAGCGGATTGCGTGGTGTGCTGCGTGCTGAGCCACGGACAAATAAAAGGCATCTTCGGGGTTGATGAAGAGATTGTCAACTATAGGGAGCTGATAGAGACCCTGAGTCCAAATCATTGCCCTTCTCTCTTCAATAAACCCAAACTGTTCTTCATCCAGGCCTGCAGGGGAAACGAAGATCAGCCAGCGGCATTTCCTCTCATTTTCCCAGATGATGAGGTCACGCCGGTCAGCGATGCAGCTGTACCCATAGACTCCATACCTGAGATGGCAGACTACCTGTTAGCCATGTCCACTGTGCCACACTACGTCTCATACAGGGAAAAAGACAAAGGAACCTGGTTCATACAGTCCCTCTGCCACAACCTGAAGCTGCTGGTGCCAAAGGGTATCGATCTACTCTCCATTCTGACTCAGGTGAACAGCGACGTGAGCAAAAAGACGGACAAAAGCGGTTTGAAGAAGCAGATGCCGCAGCCAGAGTTCACCCTCACTAAGAGAGTGGTTTTCCCTCTACCCAAAACCCCTCTTTAATAATGTCCCGCTGTCAGCATACACAGAGATGTTTACATGACCTGAATGTGTCGATCGTAAATGTGAGGAAATACTACGTGCAAAAAATTGATTTGTTAAATCATAGCTTCAACGACACACAGTGAGCTCAAGCCCCAGATGAGCTCGATACCATCTACGCAATTTACATTAAACTTGAATAGTTTTCTACATTTTCTCAGGTAGGGCATGAGCACGTATCGCCATATAGTGACCAGATAcaagaataaatgatttttgtaaCCGTTTACAAGTTTTCAGCGATGTCGTACTGTTCATCATGATTGTAAATAGACAATAAATTATCACATTCGCCCAAAAAACAGAGCTGATCATGTTTCTGCTGGGGCAAAGTCTATGTTTGCATGTTTGTATCTGTCTAAGAGGTACAGTGCACTTGTTTGTTTCTCTGCTGTAACCAGCAgcttattaatcaaataataacatTTGAAGGCACAGGGAAAGCCTGCTACTGTTGCGTATTGCCTTTTGCACTCCATAAATACTGCACTTGCACTCaactcaataaaataaaaattgtagtAGCTAGGAATACtttaaattcattacatttttaaatcgcGTGACCAAAGCTGGATAGTAACTAAATTACACACAATCAGTATTAAATAATCAAGTTCTGAAATATATAGTTTAAGATCAGTTAGTGCAAGTTTCCTTTAGTTGAAACAGCTCATAGTCTGGGTACCTGAAACCAGGGGATAGATGCACAAATTcatgctctttcttttttcctttttccacgCAGCACATGGATTCCCAGAGTTGTTGTCATTAAAATTCTTTCACCTAATATGTTTACTTGAAGCACCctgagattttaaataaatattgtaattatctCACTTGCATGTTCATGATTCTCTGGCGTTGGTTAATGATTGCATGtcacattttttatgatttcattaaCTTTTCATTAAACTCTGAAACCCGCTGAAGTTAATTTACGAACTTCTGTTTGTAAAACTTTGTGaatgtaatgttatatttaatgctGTTAGTAGGAATAAAACAGAATCTACTTTCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100187 lncRNA downstream 145358 4636010 ~ 4636342 (-) True G67747
TU100185 lncRNA downstream 162832 4615858 ~ 4618868 (-) False pde11a
TU100165 lncRNA downstream 225950 4552424 ~ 4555750 (-) True G67730
TU100168 lncRNA downstream 229825 4551237 ~ 4551875 (-) True G67733
TU100138 lncRNA downstream 354054 4427288 ~ 4427646 (-) True G67712
TU100380 lncRNA upstream 152864 4944603 ~ 4954082 (-) True G67847
TU100466 lncRNA upstream 213555 5005294 ~ 5006781 (-) True G67904
TU100474 lncRNA upstream 235305 5027044 ~ 5027597 (-) True G67911
TU100476 lncRNA upstream 258690 5050429 ~ 5051292 (-) True G67913
TU100488 lncRNA upstream 297443 5089182 ~ 5089393 (-) True G67923
XM_043248641.1 mRNA downstream 1023 4774995 ~ 4780677 (-) True prkra
XM_043249748.1 mRNA downstream 115046 4615842 ~ 4666654 (-) True pde11a
XM_043249759.1 mRNA downstream 210584 4557126 ~ 4571116 (-) False nfe2l2a
XM_043249758.1 mRNA downstream 210585 4557126 ~ 4571115 (-) True nfe2l2a
XM_043249363.1 mRNA downstream 410109 4367160 ~ 4371591 (-) True evx2
XM_043248581.1 mRNA upstream 685 4792424 ~ 4822965 (-) False LOC122351499
XM_043248583.1 mRNA upstream 685 4792424 ~ 4822962 (-) True LOC122351499
XM_043248582.1 mRNA upstream 685 4792424 ~ 4822960 (-) False LOC122351499
XM_043248522.1 mRNA upstream 61210 4852949 ~ 4859666 (-) False stk24a
XM_043248521.1 mRNA upstream 61210 4852949 ~ 4859666 (-) True stk24a
TU100077 other downstream 659861 4120548 ~ 4121839 (-) False G67668
TU99606 other downstream 1587208 3189847 ~ 3194492 (-) True G67358
TU99607 other downstream 1588760 3189847 ~ 3192940 (-) False G67358
TU99608 other downstream 1588760 3189847 ~ 3192940 (-) False G67358
TU99433 other downstream 1945077 2814935 ~ 2836623 (-) False LOC122352064
XR_006251761.1 other upstream 3212 4794951 ~ 4822962 (-) False LOC122351499
XR_006251762.1 other upstream 3214 4794953 ~ 4822962 (-) False LOC122351499
TU100372 other upstream 64911 4856650 ~ 4945665 (-) False LOC122351456
TU100414 other upstream 167978 4959717 ~ 4983747 (-) True G67863
TU100469 other upstream 218774 5010513 ~ 5014735 (-) False dbi

Expression Profile