RNA id: XM_043248543.1


Basic Information

Item Value
RNA id XM_043248543.1
length 2514
RNA type mRNA
GC content 0.52
exon number 28
gene id LOC122351466
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6069745 ~ 6087019 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTGTGAGGAAAGGGTAGAAAAGGACAGCAAGATCAGGGAGGCAGGCCTCTCACAACAGTTCGAGCCGACCTTCGAGAAGGTCAGAcagaggcaaggcaaggcaaggcaagTGTCTTTGTTCCCAAAGGGAGAGCCTGGTTTTGGTCAACCTGGACCTCAAGGTCCTACAGGATTTCCAGGCAGTAAAGGTGCTCCCGGGCCTAAAGGTGATCCTGGTTTTTCTGGAAGCCCTGGTGCACCAGGTCGTCCAGGTCTTGATGGTGCTCCTGGATCTAAAGGTGAACCTGGCTATCCTGGTGGTCCTGGTTCTCGTGGCCCACCTGGGCCACCCGCCTTTGGCCTTCAGGGTCCCCCTGGTCCTCCTGGAGCTCCTGGCTCTATGGGGTCTCCTGGAGTCCCTGGTGCAAATGGAGAGAAAGGAGACCGCGGTCTCCCAGGTTCAAGTTTTCCAGGGTTGCAAGGTGACAGAGGAAGCCCAGGACTTACAGGGCCTCCTGGTCCTTCTGGTCCACCTGGAGGTCCAGGACTACCTGGTCAAGATGGCCTACCAGGGCTGCCTGGGCCTAAGGGAGACATTGGTGGGATGGGTGCTCCAGGGCCTGTAGGTAACCCTGGCAACCCTGGCAGACAAGGCTTTCCAGGACCAAAAGGAGATGATGGTGTCCCAGGAAGATCAGGAAACCCAGGTTTCCCAGGAACAAAGGGAGACAAAGGTGACCCAGGCATTCCAGGCCCACCTGGCATAGGCACACCAGCAGGTCTACTTAAGGGGCAAAAAGGAGAATCTGGAGTTCCAGTGAAATCCTGTCTGGTATTTTCTCTGTGCACACAAGGTTTACCTGGGACTGATGGTCGTCAAGGTGCAGTGGGAAAGACTGGTATCCAAGGAATACCAGGTCTCCATGGGCCACCAGGTCCTAAAGGAGACCCAGGTGCCAGAGGTGAGAGAGGTGAACGGGGGCCTTCAGGTCCTAGTGGTCTTTCTGGTCTGCAAGGACCACCTGGTGAAAAAGGTTCACCTGGACCAAAGGGAGACACTAGTGTTGGCCTTCCAGgGCGCCCAGGACCACAGGGACAAAAGGGAAGTCAAGGACTGACAGGTGTTCCTGGACTTCGGGGTACAAATGGAGAAAAGGGCAGTAAAGGTGATCAAGGCCTGAGGGGAACTCAAGGTCTTAAGGGAGAGAAGGGTGATGTAGGACCCCTGAGTAGCGCCCCTGGTCCTAAAGGAGACCCAGGTGCCAGAGGTGAGAGAGGTGAACGGGGGCCTTCAGGTCCTAGTGGACCTCCTGGTCTACAAGGACCACCTGGAGTAAAAGGTTCACCTGGACCAAAGGGAAACACTGGTGTTGGCCTTCCAGGGCCACCAGGTCAACGGGGAGAAAAGGGAAGTCAAGGATTGTCAGGTGTTCCTGGACTTCGAGGTCCAAATGGAGAAAAGGGCAGTAGAGGTGATCAAgGCCTGATGGGAACTCAAGGTCTTAAGGGAGAGAAAGGTGGTGTAGGACCCCCGAGTAGCACCCCtgGTCCTAAAGGAGACCCAGGTGCCAAAGGTCAGAGAGGAGAGCAGGGGCCTTCAGGTCCTAGTGGACCTCGTGGTCCGATGGGACCTTCTGGTCTCCAAGGACCACCTGGACTAAAAGGTTCACCTGGACCAAAGGGAGACACCGGTGTTGGCCTTCGAGggGTCCCAGGACAACAGGGACAAAAGGGAAGTCAAGGATCTGCagGTGTTCCTGGACTTCGAGGTCCAAATGGAGAAAAGGGCAGTAAAGGTGATCAAGGCCTCAGGGGATCTCAAGGTCTGAAAGGAGCAAAGGGTGATGTAGGACCCCTGAGTAGACCCTCTGctGTGATTCGTTTAGTGGGAGGTTCCAGCCGCGGAAGAGTGGAGGTGCTTCATGAGAATGCCTGGGGAACGGTGTGTGATGACAGCTTTGACACTGTGGACGGTACGGTGGTGTGCAAGATGCTGGGTTTCCAGAGGGCCACTCAGGTGTTCACGGAAGGTGCAGGAACTGGACGTATCTGGCTGGACGAGATGAGATGTACCGGAAATGAGATGAGCATTTTTGACTGTCCACATGGAGGATTCGGAGTTCATAACTGTGGCCACAGTGAAGATGCGGGAGTTAGCTGTgtctgaataaaagaaaaaaacatctcacaCCAAAAATTTTGCTTCTTGACTTTTAGCCAGCTAGTGCTTTTTAGTGCACGTATACCGTCAGTTCTCCTCAAACATATGCAGTTATCAAATTATGAAATTACTGCATAGTAAAACCAAACTTATTGTTGTCAGATGTTCTGCTTGAGAAGTATGCGTGGTGTCATTAAGGCAGCAACATCTATGCATTTCTGAGTTGGATTTATgtgtgccaatatttttggcctatgcactatataaatgtataatcacCACAATAAATTCATCCATGTGTACTGTGCTATCCTAAAACTGTCCTGACATATAACACTCAGacacagcaaaataaatagcttaattttaaaa

Function

GO: NA

KEGG:

id description
K13884 MARCO; macrophage receptor with collagenous structure

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100773 lncRNA downstream 22149 6045115 ~ 6047596 (-) True G68120
TU100695 lncRNA downstream 263418 5805940 ~ 5806327 (-) True G68082
TU100657 lncRNA downstream 333962 5735337 ~ 5735783 (-) True G68055
TU100655 lncRNA downstream 334573 5734924 ~ 5735172 (-) True G68053
TU100650 lncRNA downstream 354108 5715341 ~ 5715637 (-) True G68048
XR_006251731.1 lncRNA upstream 30832 6117851 ~ 6142682 (-) True LOC122351301
TU100892 lncRNA upstream 154303 6241322 ~ 6241602 (-) True G68189
TU100973 lncRNA upstream 593076 6680095 ~ 6683011 (-) True G68265
TU100974 lncRNA upstream 610667 6697686 ~ 6697893 (-) True G68266
TU100979 lncRNA upstream 628977 6715996 ~ 6718143 (-) True G68270
XM_043248234.1 mRNA downstream 90867 5975136 ~ 5978878 (-) True LOC122351270
XM_043248541.1 mRNA downstream 138609 5912855 ~ 5931136 (-) True LOC122351463
XM_043249311.1 mRNA downstream 170102 5888893 ~ 5899643 (-) True LOC122351906
XM_043249312.1 mRNA downstream 170104 5888893 ~ 5899641 (-) False LOC122351906
XM_043249341.1 mRNA downstream 193354 5875474 ~ 5876391 (-) True LOC122351923
XM_043248544.1 mRNA upstream 1450 6088469 ~ 6098804 (-) True LOC122351467
XM_043249430.1 mRNA upstream 12052 6099071 ~ 6099912 (-) True LOC122351979
XM_043249183.1 mRNA upstream 232071 6319090 ~ 6477546 (-) False myo16
XM_043249184.1 mRNA upstream 232071 6319090 ~ 6464268 (-) False myo16
XM_043249182.1 mRNA upstream 232071 6319090 ~ 6452147 (-) True myo16
TU100782 other downstream 25820 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 146925 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 700156 5349955 ~ 5369589 (-) False LOC122351925
TU100497 other downstream 961358 5105894 ~ 5108387 (-) True G67930
TU100475 other downstream 1040270 5028926 ~ 5029475 (-) True G67912
TU100850 other upstream 12328 6099347 ~ 6099883 (-) False LOC122351979
TU100887 other upstream 159881 6246900 ~ 6261069 (-) True G68188
TU101110 other upstream 983966 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 1927430 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1992117 8079136 ~ 8094847 (-) False als2a

Expression Profile