RNA id: XM_043248546.1


Basic Information

Item Value
RNA id XM_043248546.1
length 2598
RNA type mRNA
GC content 0.44
exon number 6
gene id steap3
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5017068 ~ 5022355 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCACGGATAGCTGGAGTATGATAAGAATGTCTTTTTCTGCACGGTCTCGTATCTCTAGCGCACAGTAACGGAAGCGCGCCGGTTACAGTCCTGGAACAGCACGGTCACCAGGAAAAGAGAAGTTATATGAAAGtgGTTCATTATGGCAGAAGATATGAAAACTCCCTTGCTCTCAGACTCTGAAGGCCCTGCTGATGCCCTGCCTGTATGTCTAACCAGCCCTACAGTGGCCATTCTCGGTTCTGGAGATTTCTCCCGCGCACTGGCTCTACGGCTGGTAGCTTCTGGTGTGCGAGTGGTGGTTGGGAGCCGCTGTGTGAATCGCATCCCATCAGGACTGTTCCCTGACGCAGTGGAGTTGAGGAACCAGGAGGGAGCCGTATCACAAGCAGTGTGCCTAGTGTTTATGGCATTGTTCCCTGAGCATTATTGCTCTTTGCTGGGGTTACAGTCTGCACTGGCGGGGAAGGTGCTTGTGGATGTAAGTAACGCAGCAGAGATGAAAATCCACGGACCGTCCAATGCAGAACGACTGGCTGAGCTGTTTCCAGACAGTCTAGTGGTCAAAGGATTTAACACTGTTTCAACCTGGGAGTTGCAGACTGGGGCTCATGATGGAAGCAGAAAGGTCCTCATCTGCAGTAACAGTACAGAAGGGAAGAAGAAAGTTGTACAGTTGGCTCGGCAGATGGGCTTCCACCCCGTGGATATGGGTGGCTTGTCTGCTGCTCGAGAAATCGAAGTAGTCCCATTGAGCCTATTCCCATCTTGGAGTGGCCCAGTTGTTGTCACcgtccttctttttttctttttctatggCTATGGTTTCTTGCGAATTTTGCTGCCTTATCTTGCACAAGGACACAATGCTTTTTACCGTCTTGCCCTTGACCTTGTGAATGAGAGCCTGCCAGCAGTAGCCTTGGTGACTCTGGCACTCGTGTACTTCCCAGGGTTGTTTGCTGCGTGGTTGCAGCTTTGGAGGGGCACCAAATACCGGCGTTTCCCATCCTGGTTAGACAACTGCTTGCAGAGGAGAAAACAACTGGGCctgttgagttttttttgtgcagtgttgCATGGAGTCTACAGCCTTTGCCTGCCACTGCGCAGAATTACATCGCACAGGATTGTCAATTCTGCCTACAGACAGGTTAAAGCAGGTACAGAGGAGCCCTGGGATGAGCTGGGTGTTTGGCGATCTGAGCTGTACCTTTCTTGTGGAGTGTTGGGTCTTGGTGTTCTTTCTTTACTGGCCATCACATCCTTACCCTCGGTGGGCAACACTCTCAACTGGAGAGAGTTTACGTTTGTACAGTCTGGTTTGGGCTACATCGCTCTGACTCTGTCCATCATGCACACACTCTTCTTTGGCTGGGATTTTACCTTCCACATTGAGGCATATCCATTCTACATGCCGCCAGGCTACTTATTGGCTGTAGCTCTACCCTGCGTTGTTCTGCTGTGCCGTTGTTTCCTCCTTCTGCCATGCATCTTCACCAGACTGACGAGAATCCGCCGGGGATGGGAGAGTAAACGCAACTGTCCAGTCCTACATCACCACCATGTGGTGGCTAATGGGATGCCATAGAAACTTGGGAAAGAATGTAAGAACgcctacatttaaaaacttgGTGTAACAAGGTTTGTAAAGTATTTTGAGACTGCTCAAAGTCTGACTAGATTAAGTCAGCCTTATCTAAAATGGGAATACTAATGATATGATGAGATAGTGGCAAAACTGCCATCTCTGTAAGGGAGAAAATAATAAGACAGATATGATAAGGTAAATTTTACAGTCAGGTTGAGTATTCTGAACTGATGTTAGTGTTATTAGGTGCAGCATGTACCAGCTGTGATCTTCTCTCAGAGGCACACCTATAGAGCACTGCATACATGTACAAAGTGCATAAAGAGGTCTCTGTTCACTAGAATATAAAAGccatcattttttaattgttcttaTATTTGAGCATTACACCTATGCATATGCTCACACTCAGGTCTTTATTACATAACTCTTAGGAAAAAGAGTGAAAGACTTGAACTGAGGTATTAAAGTCAACTCCTGACTCATCttttttatgaacaaaaatgacttaaacATGTGCCTTGTATTATTACTAGAGTATGTACCTCAGATGATTGTCTTCAAGAACAGTTACTGAGTAAACTCGTGTAAATTCACAAACTCCATATGTAACAGGGAGGCCAGCGTTATACAGAGTACTAATAATGACCAAAACTGcattatatttgtttgaaaactGTTATAAAcaaagcatgtgttttttttttttttttttttgtaattatggaAAAAGTTTAATAGAAACTTCTGGATATTTGCAAAGATGTACGATACGgaccagtttttattttttgtttcacgTCTTACTGATTGGCTATCGTTACTGTACTGCAAAGTTTTGAACTAAACTTTCAATCAATTAATCGATATTGTCGGTGTTGTTAAAGCATGATTTAGACAttcaactttatttaacaaaacggCGATCACTTTCCAAGAcgtcactgaaataaaacaagatatctGGTATCTgatttgttgtaaataaaataaaagtacataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100466 lncRNA downstream 10287 5005294 ~ 5006781 (-) True G67904
TU100380 lncRNA downstream 62986 4944603 ~ 4954082 (-) True G67847
TU100187 lncRNA downstream 380726 4636010 ~ 4636342 (-) True G67747
TU100185 lncRNA downstream 398200 4615858 ~ 4618868 (-) False pde11a
TU100165 lncRNA downstream 461318 4552424 ~ 4555750 (-) True G67730
TU100474 lncRNA upstream 4689 5027044 ~ 5027597 (-) True G67911
TU100476 lncRNA upstream 28074 5050429 ~ 5051292 (-) True G67913
TU100488 lncRNA upstream 66827 5089182 ~ 5089393 (-) True G67923
TU100495 lncRNA upstream 77551 5099906 ~ 5100777 (-) True G67928
TU100482 lncRNA upstream 119435 5141790 ~ 5181500 (-) True G67917
XM_043248550.1 mRNA downstream 2277 5010578 ~ 5014791 (-) False dbi
XM_043248237.1 mRNA downstream 7554 5008185 ~ 5009514 (-) True tmem37
XM_043248828.1 mRNA downstream 31472 4977659 ~ 4985596 (-) True LOC122351620
XM_043248536.1 mRNA downstream 43113 4939985 ~ 4973955 (-) True LOC122351456
XM_043248847.1 mRNA downstream 95513 4870192 ~ 4921555 (-) False zmp:0000001200
XM_043248554.1 mRNA upstream 99852 5122207 ~ 5128098 (-) True insig2
XM_043248556.1 mRNA upstream 115759 5138114 ~ 5139999 (-) False ybey
XM_043248555.1 mRNA upstream 115759 5138114 ~ 5139999 (-) True ybey
XM_043249326.1 mRNA upstream 275151 5297506 ~ 5319587 (-) True LOC122351912
XM_043249328.1 mRNA upstream 301374 5323729 ~ 5341221 (-) False LOC122351913
TU100470 other downstream 2255 5010513 ~ 5014813 (-) True dbi
TU100469 other downstream 2333 5010513 ~ 5014735 (-) False dbi
TU100414 other downstream 33321 4959717 ~ 4983747 (-) True G67863
TU100372 other downstream 71403 4856650 ~ 4945665 (-) False LOC122351456
XR_006251761.1 other downstream 194106 4794951 ~ 4822962 (-) False LOC122351499
TU100475 other upstream 6571 5028926 ~ 5029475 (-) True G67912
TU100497 other upstream 83539 5105894 ~ 5108387 (-) True G67930
XR_006251815.1 other upstream 327600 5349955 ~ 5369589 (-) False LOC122351925
TU100767 other upstream 897402 5919757 ~ 5922820 (-) False LOC122351463
TU100782 other upstream 1020920 6043275 ~ 6043925 (-) True G68124

Expression Profile