RNA id: XM_043248551.1


Basic Information

Item Value
RNA id XM_043248551.1
length 2693
RNA type mRNA
GC content 0.39
exon number 10
gene id LOC122351474
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8204280 ~ 8209919 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAACAGAAATACCTCAAGTGTCCCGGCAAAAACACGATTTGCAGGCGAAATtggaaagaaagaggaagatgAAATCTGCCGATGGGTGATTCACCCCCGGAGTCGCATCAGGCATTACTATGTTATGTTTATGGTGATCTTGACATTCGTGAACCTTATAACGATCCCTCTAGACATGGCATTTTCTGAAGACATGCAGGGTACGGCCCACAAATACTGGGTGGCCTTCAATGTATTCTCAGATGCCATGTTTTGCCTTGATGTTGCCATAAATTTTCAAATGGGTATATTCAATGACGACGGTCAGGCCATCCTGGATCCAAAATTAATCAGAAATGATTATTTCAAAAGTTGGTTTTGTCCTGATGTGGTGGCTGCCTTTCCGGTTGACATTGTCATTGTTATTGTGGAGCACTTTTATCACGCCGACACTGATTTGCTGATGGCTTCGAAGCTGGTGCGGATACTCATGTTTGCAAGGATTTTCAGTCTGATCCGTTTACTCCGTGTGCCGAAGCTTCTGAGATTCTGCTTTGAGTTGGAAAGTGTCTCTGACATTCAGCTTGAAGAAGTCAAGAAGTTTTTCCGGGTTTTTTTCGTGTTCATGTTGATAATCCTGGTTTGGCACTGGAACACGTGTCTTCACTACTTCATATCTATACTGGAGGAGTTTCCCGACGACTGCTGGGTCATGCAAGACAATATCAAGAATACCACTATCGGGGAAAAATACTCCTTTTCTTCCTTCAGAGCTTTCTCTCAACTGGCCTGGATTTCTCCTAAATCTATTCAATCGCCAACTCgtatGGCAGAGCGGTGGATGGCTCTTGTGAGCATGGTGGTTGGGCTCATCATGGGTTTTGCTCTTATCGCCTGCTTGATCGGAACAGTCGGAAGCATATCTACAACTGGCAATGAATACAAGAAAAAGatcaGCCAGCTGCAGTCGTCCAACATGTTCAAGAAGCTGCCCAGGGCTCTGCGCCTACGTGTCACTGCCCAGTACAAGTGGCAATATGACAAGAAGAACATCCTTGATCTAGTGTCAGAACGGCTGAGAAAGGATATGATGAAAGACATGTGCCCCAACTTGCTGAGCAAGAAGTCCACGTTCATGAAGCAAAGCAGAGAGTTTACAGAAGCAATCCTGGTGAAGTTGGACTACGAGTTATTCCACGCAGAAGACGTTATCATTTACCAGGATGATAAAACTGACCACATGTTCTTCATTGAGCATGGACGTGTGCTGGTGAAGAACGAATTTCTCCAAATGGGGCTGAGCGATGGAGACCACTTTGGAGagaTCAGCTTCCTGTTCGGTGGAAGACAGCTGGCCTCAGTTTCAGCCCTGACCGCCTGCAGTGTCTTCTCTTTGTCATTACAACATTTTGAGGGGATCAAGGAAGAATTTCCAGACATTGTGAAGGAACTGAGGGAAGAAGCTCAGTTGCTCAAAAATGATCTTGAGGGTAAGCCGCTTTCATATACACTGCAGGTGACAGAATCTCTCTGATCGAAGTCAGTTTAACACGCTTTTCACAGCTTTACTTCTGTAATGTTACATATTTGCAAGAGAAACTGAATTGtaatagagaaaaaaatgtaggaTGTGACTTGAAACAATTAAATAAGGTACATATTGACATATACACTAAGTAGATATGCTACACACTGATTGCAAAGTGATTGTAATGATTTTATGACtttatggttttttttaaaggtgttgGGCTGGAAGAAGTTACATCCGCATCGAACAGTGTGTGACGACGATCAGGATCTTTCAGTTTAATCCACTGAATAACAGTATTTTcttcattaataattacaaaaataaaattgacattagatttatatatttttgtgtataggTAAGATgcttaattctgtcatttttatttgaattgttattaatgtatattttgatgaataatatagcaaacaaaaaaagttaccgTGTATGTACTTGTAATTTCTGTATTATTACAGTTCAGTCTGTTTATTATATGCTTGCAGACATCATGACACACAGGTCCAGACAAagatgttaaattaatatttaaaaaaaatacttaataaacacatgattaaatatttacaccGGACAAATCTTTCAAGCTCCGGACAAAAAAGTAGTATTAATGTAGTCCTTATTTTCATCTCTACTACTCTCATAAtcatgcataaataatgcaaatggaAGTCTtagatataatattattacactgtTTGATCCATTTAAAAtctaagactttttttaatatgacttttttaatgtgtgtgaaaacaaaGAAACCAGAATTCCTGTAAAAATGCTTCTTGTCTGAAACTGAGCTGATAAAACTGGCTGTTATGAATGATTGAAAATGCATcacataaaaagaataaaataaacctgcgGAAATATCTTAAATGGAATAACCTTTTCCTCACTGGCAAGCAGGTAAAGAGGCCTGTGGGTTCCCGTGTGTCCTCCAGAGGGCGCAGCTCCTAAAGATAAATCCCCTTTACCACTTCATTTGAATCTTTTTGTACTCCAAATTCTATAATCTTTTCAGTATATTCATTGCAAAGGACCAAAATCAGCCTGTGAAAtagtttaaatacaaaacaagacGCATTTCCGAAAGCTTCTGCGAGGGTACGATCAATATCTAGCGGATATATCTGTCCTTCAACAGCAGCTCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101355 lncRNA downstream 382391 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 385448 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 822772 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 862786 7327829 ~ 7341494 (-) True G68473
TU101111 lncRNA downstream 1050326 7146440 ~ 7153954 (-) False LOC122351350
XR_006251831.1 lncRNA upstream 260944 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 551852 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 583942 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 592466 8802385 ~ 8805405 (-) True G68830
TU101792 lncRNA upstream 606601 8816520 ~ 8817618 (-) True G68839
XM_043249161.1 mRNA downstream 109433 8076468 ~ 8094847 (-) False als2a
XM_043249162.1 mRNA downstream 109516 8076468 ~ 8094764 (-) True als2a
XM_043249500.1 mRNA downstream 129834 8064653 ~ 8074446 (-) True mpp4a
XM_043249446.1 mRNA downstream 141185 8056543 ~ 8063095 (-) True tmem237a
XM_043249447.1 mRNA downstream 141262 8056543 ~ 8063018 (-) False tmem237a
XM_043249069.1 mRNA upstream 2869 8212788 ~ 8222003 (-) False carf
XM_043249068.1 mRNA upstream 2869 8212788 ~ 8222003 (-) True carf
XM_043249070.1 mRNA upstream 2869 8212788 ~ 8221963 (-) False carf
XM_043249072.1 mRNA upstream 13782 8223701 ~ 8257719 (-) False fam117bb
XM_043249071.1 mRNA upstream 13782 8223701 ~ 8257716 (-) True fam117bb
XR_006251804.1 other downstream 109433 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 186175 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 1055660 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1943211 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 2104397 6099347 ~ 6099883 (-) False LOC122351979
unassigned_transcript_1465 other upstream 131024 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 1698269 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2223588 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 2223588 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 2223588 10433507 ~ 10441872 (-) True trim13

Expression Profile