RNA id: XM_043248561.1


Basic Information

Item Value
RNA id XM_043248561.1
length 1496
RNA type mRNA
GC content 0.40
exon number 6
gene id itm2bb
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12445552 ~ 12452338 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacacatatcgcTGCTGATCAGGAAACTAAACGCTTTCATTTTgcgctgtctttttttttctcgatcTTCGCGGACGTAACCGCTCGCAGAAACTTGTCAACATGGTTAAAGTTTCTTTCAACAAGGCTCTCGCCTTAAAGGATCCGAAGAAGGAAAGTCTCATTACTGGTGTACAGGATCCTGAGGCAGCGGTGTTGGTGCGTTCTCAGTCTAGGGTGTGGTGCTGGTGCTTCTGTCTGGGATTGGCTCTTGTTCTGTCTGGTTTAGTGGGGGGAGGAGCCTACCTGTACAGATACTATGTGCCTGAGGAGGAGCAGGTGTTCGTCTGTGGATTGAATTACTTTGAGGAAGAATATGATTTTGATGAGGAGTTGGAGGTTGAAGCACCGCTGAGGCTGATTGAAGAGAATGTGAGCTTTTTCGAAGACGATGAGGCGGAGCTCATCAAAGTACCGCTTCCTGAGTTTGCAGACGGCGATCCAGCTGGCATCCTGCATGACTTTACCATGAAACTGACTGCTTATCTTGACCTAAATCTGGAAAAATGCTACATCATCAACCTGAACACATCTGTTGTCATGCCGCCCAGAGATTTCCAGGAGTTCCTGGCCAACATCAAGGCGGGAATGTATCTTCCCCAGACGTACCTCGTGCGAGAGGAGATGATGATTACAGAGAGGCTGGACAGCACCAGTGATCTGGGTTATTACATCAATAACATGTGCAAAGACAAAGACACGTACAGACTGCAGCGTAGAGAAACCATACTGGGTATGCAGAAACGCGAGGCTCTGAACTGCTACAAGATCCGCCATTTTGAAAACAAGTTTGTCGTGGAGACTTTGATCTGCGAGCCATGAAGAACGCGAGTCTTTTACACAACAGCAGATCTTCAGCCCTTCCTTTCATTCAGTAAAAGGTTCTTTCGTTCCCGCTTGATTTTTCATAGgcctttttcactttttttttaaaaatctaaaatgtgaaattgtctCATCTGGACAAAGATGTAATTACGTTTGAGTGTATGTGGAATGCGTCTTacgcttttttaaaaacagacttaATAAAGGGGAATATTGTGCACAATTGAACAAAAAAGGATTGACAGTAGCCTATATAGACCCCCAATCAGAGGTTGAACTatgtcatttaataaataactgtttattcCCATGAGTTTGCTGgaaaagtagtatttttttttatttgttgtatttaacattttcaacgTCTGCTGTATTTAAATTTGATACCATTTCAAAGGTTTCATCAAACTGGTGTGTAATTTGGACCACAATGTTGCAGTTTCACTATTTGAAGTATTTGAATTAGCATTTAATtcgtgttttttaatgtttaaaatgaactgaaaaagcatacactttctttaaaattcGTTTTGGTTCTTTGCTGATTTGTAtataagcaaaacatttttctttctttagatAAGCTTCATATAAGAAAccaataaaatcagaaaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102976 lncRNA downstream 16205 12425515 ~ 12429347 (-) True G69631
TU102990 lncRNA downstream 33717 12411507 ~ 12411835 (-) True G69645
TU102989 lncRNA downstream 38790 12406167 ~ 12406762 (-) True G69644
TU102988 lncRNA downstream 40831 12404395 ~ 12404721 (-) True G69643
TU102987 lncRNA downstream 49038 12396066 ~ 12396514 (-) True G69642
TU103059 lncRNA upstream 65948 12518286 ~ 12582425 (-) False lrch1
TU103090 lncRNA upstream 193498 12645836 ~ 12647002 (-) True G69704
TU103148 lncRNA upstream 278703 12731041 ~ 12731743 (-) True G69733
TU103153 lncRNA upstream 321103 12773441 ~ 12773852 (-) True G69738
XR_006251806.1 lncRNA upstream 334777 12787115 ~ 12789134 (-) True LOC122351847
XM_043248071.1 mRNA downstream 200764 12196754 ~ 12244788 (-) False zeb2a
XM_043248073.1 mRNA downstream 200921 12196754 ~ 12244631 (-) False zeb2a
XM_043248072.1 mRNA downstream 201928 12196754 ~ 12243624 (-) True zeb2a
XM_043248076.1 mRNA downstream 202219 12196754 ~ 12243333 (-) False zeb2a
XM_043248074.1 mRNA downstream 202219 12196754 ~ 12243333 (-) False zeb2a
XM_043249278.1 mRNA upstream 65946 12518284 ~ 12554050 (-) True lrch1
XM_043249281.1 mRNA upstream 65946 12518284 ~ 12553992 (-) False lrch1
XM_043249280.1 mRNA upstream 65946 12518284 ~ 12553989 (-) False lrch1
XM_043249279.1 mRNA upstream 65946 12518284 ~ 12553980 (-) False lrch1
XM_043249282.1 mRNA upstream 65946 12518284 ~ 12553976 (-) False lrch1
TU102995 other downstream 22106 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 255896 12166991 ~ 12189656 (-) True gtdc1
TU102802 other downstream 946180 11497010 ~ 11499372 (-) False LOC122351308
XR_006251823.1 other downstream 1758925 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 1926095 10515272 ~ 10519457 (-) False fdx1
TU103144 other upstream 256293 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 285706 12738044 ~ 12738171 (-) True LOC122352189
TU103179 other upstream 532786 12985124 ~ 12985978 (-) True G69757
TU103524 other upstream 1020802 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 1020802 13473140 ~ 13495645 (-) False gypc

Expression Profile