RNA id: XM_043248563.1


Basic Information

Item Value
RNA id XM_043248563.1
length 5410
RNA type mRNA
GC content 0.48
exon number 38
gene id LOC122351484
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9993877 ~ 10006512 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTTTATCTCAGGGAGGCGTGTCTTTACTGAATGCATGAGTCAGGAAGCGCTTTTCCTGAACTTTACACTTCATGTTATTTACGTCTTCGTGTAGTTTCTTAAAACCTAAACGTGTCGCTCGACTCTGACTCTGTCCACGacaCCGGTGGCACCATGACAGTGTTTGAAAACTGCACAGTGGTGTTAGATGTGAAAAATTTACCTTTTAAAGAGAAGAATAAACTGAGATTAGCTCTTCTGGAGAATGGAGGAACCATCACTTATATCATCAACAAAGAGTGCTCTTTTGTGGTCACTAGCAGTGTGAATGATCTGAGCAGTAACCGGCAGCGCAGCATCCAGAAGCTGCAGATCCCAGTGGTCGGGACACAGTATGTGTGGAGCTGTCTGGACCAAGGACATCTCCTGCCTTTGAAGGAGCATACTTTGACCCCACAGCTGCCATTTCCTGCCTCTGAATTCCTCCCTCCTTCAGagacacacaaactaCAAAAAGAGACATTCAAAGGTCTCCCTGAACTCCCAAAGACTGAGGTTGAGATTCTTGAGAAGGGTGGACCCCGTCCTGGCAGGTTCAGAGTTTACAAGGAAGGCGACAAGGACCAGCCTGTATTTCCTTCATATTTTCAAGTGGCCAAGTATTCAGTTTTTAAGAAGgtcAAACCCAAGACCTTGTCTGTTCTGGAGCTGCAGAGTGCCAAAGGCCGAGAAGGCCAGCAGTATCGTGTGTTGTGTTCAGGCTTGGGTGAAGCTGAGacCGCAGTGTTTCAGGACAAGATTGTGTTCTGCGTGACGTCTGAAGATGCCGTGGAAGCATATCTGCAGCTGATGAAGGAGATGGAGGCCGAGGGattcacaaagacacacacacttctccctGAGCTTGAGTGTCTGGCATCCTACAGTCTGAAGCAGCTGCTGTTGGAAGAGAAGCTGAACTGCAGCACGTTGTCAAAGGAAGTCGGTGTCTTTGTGGAGCTGGTTTGGACCGAAGCTCTCGGTTCTCTTAACAACATCCTGACGGTCCCTGTCTCCAGAATCAGCCTCAATGATGTGAGCAGGGTGGAGGGATTGTTACTGCAGGCACAAAAGActgagaaagaggaggaagtCAAAGCCCTGCTGGAGGAAGTCAACACTCTTCTGCCCCTCAGAAAGATCGACCCTCCATCTAAACACAAGCTTGTGTCTCAGAAACTAGACCTTTGTCAGCTGATCAGAGATATAGTAAATGTGAGCGAGACCACTCTGGGAAGCCCCTCACCCTCGTCTCTGGGAAAGTATCGAGCTCTGAGGTGCAGCATTGAGGTTGTTCCACCACAAAACCCTGAGTTTCATGTTGTATCTCAGCTGCTTCGGGACAGGCCTGTTCAGATTCAGCAGATACTGCGTGTCAGCAGAGGGGTGGAGCTTCAGTTGTTTATGGAGGATTTGGGCAACATTAAACCCCTCCTTCACTCCACTAGTCCCAGCAGTTTTGTTGGAATACTGTCACGAGGTCTGCTGCTGCCCAGGGTTGGAGTCGAACAGCATGGGATTGAGAGAACGGATATTGGGAATCTCGGAGGAGGAATCTACTTCAGTGACTCTCTGAAGACTAGTGTGAAATACTCCAAGCCCAGTGTGACTGACGGCTCTCGGCTGCTGCTGGTGTGTGAAGTGGCGTTGGGTCGGTGTAAGGACCTGCTGAAGAAAGACACCACATTGACTCGTGCTCCTGACGGCTTCCACAGTGTTCATGGAGTCCAGCGCTCTCCCAACAGACTCTCTGAATTTGAGgATGATGAGTTTGTGGTCTATAACACAGAGCAGATTAGACTGAAGTATGTGGTGCAGTACAGTCTGGAGGGAGACGAGTTAAAAGATTTCCAGCCTCAAATCAACACTGAGCTCACGGACACAACGCCTGATATCTTGTCCAGTGATGACTGCGAGGCTTTGGAGTCCACTAAGAATCCTCTGGAGGAGATGAACGCAGGTTTGCTGGACAGCAGTGGTCAGAAACTTCCTCTAAAGGCTGTCAATGTGAGATGCAAGCTGATGGACCTGCTGTGTCAGGTCGTCTTATTTCAGACCTACACAAACCAGAGTGCTGTTCCTATTGAAGCCAAGTATGTTTTTCCACTGGAGGAGACGGCAGCAGTGTGCGGATTTGAAGCCTTTATCAACGGAAAACACGTCGTGGGAAAGGTAAAGGAAAAGGAGCAGGCTCGTAAGGAGTACAAACAAGCCATAGAGAAAGGTCATGGAGCATACCTGATGGACCAGGATGCACCTGATGTGTTTACTATCAGCGTGGGGAATCTTCCTCCTGGAGCCACAGTTTTGATCAAGGTGACGTTCATCACTGAGCTGGTGGTCAGATCAGGATCCGTAGTCTTCTCACTGTCTGGCAGCGTGGCACCATGGCAACAGAGAGCCGCCATTAATCAGACCACTCAGGCCACTGTTGAAAAGATTGGTGTGACGGAGCTTCAGTCAGAGGGGGAGTTTTCTCTGTCTATGTCCATTGAAATGCCTTATGAGATCATCAACTTGACCTCTTCACACCGCATCAAAACCAAGAGGACAGACTGTAAGGCAGTGATCAGCACGTTACCGGGACAGACTCTGGGGTCTGAAGGGTTACAGGTGTCCTTCAGTCTTTCTAATATCCACATGCCCAGGATGTGGGTCGAGAAGCATCCGGATAAAGATAGTCAGGCCTGCATGCTGGTGTTTTATCCAGACTTTAAGTCCAGCGAGGTGTCCGGCTCTGGAGGTCCGTCTAGTGTGAGTGATGTGGTCATTCTTCTGGACACCTCCAAGTCCATGCAGGGAGACGCCATGCTGAACGCCCGCAGGATTGCCCTTCAAGTCCTCAAATCTCTGGACCCCTCACTGAAGATCAACATAATCTCTTTCAGCACTGattACAAAGAAGCTTTTCCTGCCCCAGTGCCTTTAGATGAGGCATCTGAAGCAGCCAGAAAATTCATTATGTCGTGTGGCGGCTCTGGTGGCAGCACTGATCTGTGGAGGCCTCTCCGGAGCCTGAGTCTGCTGCGTCCCGGCCGGGGCGTGAGGAACATCCTGCTGCTCTCTGATGGACATGTTCAGAATCAGCCTCTCACTCTGCAGCTGGTCCGAGAAAACTCCTGCCACACGCGCCTCTTCACCTGCGGACTCAGcttGACAGCTAATCGTCATATGCTCAGAGCTTTGGCTCAGGCGGGAGGAACATATGAATTTTTTGACACAAAGATGAAACACACTTGGACACAGAAGGTGCGAGCTCAGGTTCAGCGTATGGAGGCTCCAGGCTGCAGATCAGTGGCAGTGAAGTGGCAGCAGTTTAATCCCACAGCGCCGCGTCCAGTTCAAGCCCCCTCACAGCTTCACGCTCTCTTCAGTGACTGTCACACTCTTGTCTACGGATTTGTGCCACACTGCACTCAGGCCACACTGTTTGGTGATTTGAGTGGACAAGAGATCCAAACGATGGTTTCCACCACAGAACTACAAAAGACAAAGGGGACTCTCCTTCACAAGTTAACAGCAAGAGCGATCATCAGAGACTATGAAGATGGCATTCTAGCTAACAGTGAGGCAGAACATGAGGGGAAGAAAGCAGAGCTGAAGTCCTACATCATTGAGCTCAGTAAAGAGTTCTCCATCTTGTCCCATTTCACAAGCTTTGTCGCCATTGAAGAGAGGGAGCAGAATGAGCTTGACACTGGGTTCACAGATATTCCTAAAATCATATCAGAGGAGGAGGTGGATATTTTGCCATATATAGGCTGGACTGAAGAGAAGCTGGATGCTCTGCATAGTAGcagtgatgaagatgatgatgtgGGCCACATTATCTCCTCATCTCCAGATCTCCTGTATTCTGCTTGTGTACAAGCTgatttttatgatgattttatgGATGtttattctgattctgattatgAATTCATTGGCCAAGAATCTGAATGTCCCCCTTCTACTCCTAGCTCAAGAACCCTCGATTGTCCTCCTCTTTCATCTCAGAAATTCATGTCTTCAAGACCTGAATTTTTTCCCGGAGAAACATGGCTGTTATCCCCACTGTCTTTGATCAACCTGCATTGTCTGCTCCTCCTTCTCTCCCTCTATCTGGTGATTTTATGTTTCCTTCAGAGTCAAAATGAGTCTTTGAGTTTTGGATCCTCAGCCACTGGACTCTTTGGAGCATCACCGGGACAGCAGCAACAGACACAACAAGCCGCTTTGACTTCTAAAGCTGCTACACAGAGTGTCACTTCCTCCATGGCTCCCCTTCTTCCTGTTACATCAGCTATCTTTGGTCAACCTGCAGGTCCTAAATTCGTCTTTGGAACTTCAAATAATGCATTTGGTGGCAGTACTGGTCTTTTCAAAAAGGCGGCTGAGCCCGAACAGTCTGGTTTCTCCGCTTTTACCATTGGAGTATCTCAGCAACGAAAACATCCTGTGTTTTCTGCACCTGGCTTTCCTAAGGGGAGAGGAAACATAGGTCTGTCGCTTCCAGGAAGACCAATAAGCAGACCAGACACAGTGGCCTGGAATGAGCTGTTTGAACTTCAGCATGAGGATGGATACTGGGAGTGCACTGACAGGCTGAGCAGCTTCCTCAACCTGGACATAGACTTTTTTGCCAATGTCTTCCTTCAAGAGAAAGGCATCCGTTCATTTGGTGTGAAGGCTCATGCTGAAGTTCTGAGGCTGGTGGCGACTCTGCTGGTGCTGCAGCTGATCCGGGTGAAGAAGCTGGAAGTGGGACGGCTGCTGGAGTCTCTCCTTCGACTAAAAGATCCCCAGGAGCCCAGACCGCTGTACTGGGAGGCAGTGAAGAGGGCCGTGGACTGGGCCTGTCGGACGGACAGACAGTATCCGTGTGTGTGCAGCAGGCTGGAGATGGGCTGGGATTGGGAATCATCTACACGTCAACTACTGGGCTGTGATTCTCCACACCCTTATTCCCCGCTCAAACCTGTTCTGGAGAGACGTGTGGACGTGTCAGTCATGTAGAAACTAGAGTTACTGcttaattgtttaatattttaaaaaatatcagagTGCCATCAgaactgtattaaaataattgaattttattaaattagaaaatattgaaacaaGTGCCCTTTTTTCTAGACTTTTTCTCCCCAAATTAGGTCAAACTTTTAATCTAATATCACTCTGATTTTTAGTAAATGTATAACAAGTCATTTCTTCTCAGGTTTACATACATTAGAAGAGCAACAAACAGCTGTACATTAAATATGGTTATGATGCAGtatgttgttttatcatttaaaacataaaattacatttgcgaaatgttttgtgtgtatctggtgtcttttttaaaagaaattaaatacattcaaataaaagaaacattagcACCTCAAAGACAAACA

Function

GO: NA

KEGG:

id description
K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102047 lncRNA upstream 102297 9890651 ~ 9891580 (+) True G69003
TU101892 lncRNA upstream 418223 9575421 ~ 9575654 (+) True G68908
TU101881 lncRNA upstream 581142 9255332 ~ 9412735 (+) True G68901
TU101878 lncRNA upstream 752490 9240938 ~ 9241387 (+) True G68900
TU101875 lncRNA upstream 799574 9180904 ~ 9194303 (+) True G68897
TU102091 lncRNA downstream 48984 10055496 ~ 10056501 (+) True G69028
TU102094 lncRNA downstream 54546 10061058 ~ 10061611 (+) True G69031
TU102095 lncRNA downstream 55173 10061685 ~ 10061887 (+) True G69032
TU102096 lncRNA downstream 55696 10062208 ~ 10062436 (+) True G69033
TU102097 lncRNA downstream 64146 10070658 ~ 10070891 (+) True G69034
XM_043248207.1 mRNA upstream 87696 9895081 ~ 9906181 (+) True LOC122351260
XM_043249671.1 mRNA upstream 108944 9838315 ~ 9884933 (+) True LOC122352127
XM_043249505.1 mRNA upstream 335502 9653656 ~ 9658375 (+) True prmt2
XM_043249261.1 mRNA upstream 341252 9646444 ~ 9652625 (+) False LOC122351877
XM_043249258.1 mRNA upstream 341252 9647888 ~ 9652625 (+) True LOC122351877
XM_043248128.1 mRNA downstream 1430 10007942 ~ 10022230 (+) False LOC122351208
XM_043248127.1 mRNA downstream 1441 10007953 ~ 10022230 (+) True LOC122351208
XM_043248129.1 mRNA downstream 1442 10007954 ~ 10022230 (+) False LOC122351208
XM_043248131.1 mRNA downstream 16181 10022693 ~ 10030552 (+) True LOC122351209
XM_043248133.1 mRNA downstream 24289 10030801 ~ 10038362 (+) False chaf1b
XR_006251853.1 other upstream 437230 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 844211 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 844216 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1127980 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1560394 8431145 ~ 8433483 (+) False sumo3b
XR_006251850.1 other downstream 322219 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 1476925 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2039987 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 2621023 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 2724324 12730836 ~ 12730962 (+) True LOC122352187

Expression Profile