RNA id: XM_043248574.1


Basic Information

Item Value
RNA id XM_043248574.1
length 4363
RNA type mRNA
GC content 0.46
exon number 13
gene id heg1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18760460 ~ 18771739 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCCTTCCAAGTCTTCATGTCCAACTTTAAAACCAACATATGGAATTTACCCATGGGAAACTGTTAAAAGGACTCACTTTCCGATGGTGACCCGGACCACTTTGgcgttttatttattaggaAGTCCGCCTGGTCGCCTTTATAATGGAAACGTGTGTCGAGAGACGCGCTCGCCGTGTGGTTTTCACGGTCTTTCTGCTTGTCCTAAATCCTGTGATTGCCGAGACTTTCTTTACAGACGCGGACACCGATAACCCACTGAGCACCGAAACTTTTTTTACCCGAGCAACTGGTGTAAAACAAGCTTCCTCCAGGCCGGGGAGAGAGGCCACTTCAACAGCTGGGGATCTATCGAGTGGACTGGGGGAGATGACGGACGTTCCCGCCAGTGTGTCCATCACTGGAGCTCGAGAGGGACATTCAGAAAAACCTTTAAGCATCTCTACAAATACAGCTGACTGGAGGATGACCTCGGATGATTCCACTGAGCATCTGCAGACTGATAAAGAGTTTACCCATAATGTCACAGCCCAGTGGGAGGGTTCATCAGTAGCATCACACAGCATCACAAGCCACCATCCCGTTACAGAGGCTCGAACAGTGCGAGAGGTTCCCGTGACTGATCACAGAGAAGTTGACACCACCGACTCGTTCTCTCACACCGATAGCACCTACATTTCCACAACCAACCGAGTCAGAGAACGCACGCTGCTCTCTGTGACCTCCAACAGCACCTCTGCGTACACTGAAGATTCCAACTCCTCGGATGCTGTATCTCAAACCTTCAGCTGGGAAGTGAGAACGTCAGGAGCCACCCAGGCCAAGGAGGAAACCGTAGAAGATGTATCTACATTGTCTGAACAGACCGAACCCACTTTGGAAGATCATAATGCCACCAACGCGACTCAAGGCCACTCTTTGGAGACAGAGCAGTCAGCGTTGTCCCATGGCACGGAGTCACAGACGGGGCAATCTAGTGTCACAGGACAGACCTTTGAACAGGTGTCTGATAATGACGGTCAAAATTCAACTCCACCTTTTACAATGATCAACAGAGATGAAGGGCAAATGGATGCCACATCAGTGAGTGGTGGGACGTCTTATACAGAAACCGGTGACTCTCTGTCATCTATCTCACCTTTTACATCCGGTGGAAACAATGCCACTAGCACATCCCAGCAGAGCAGTGAGTCAACAGTGACTTATTCTCTGGATACTGATGCTTCCACTGAGTTTTCTACTGGATCTGTCAGCTCAACTGGCCGTGAGGAACTCGGAGGGTCTCCGACCCATACAGTGGAGGAGACAACCATTCAGGGCCTGACCACTGCACCGCCATTGCCCGAAGATGTAGCCACCACAACACATGACTCATTTACGAAGTTCCTCTCTGGCAAACCACCCTTTGACCCAAAAACCGATGACCGGGCCAACACGGAAGTGGTGCCAACATCGGCCGTGCCAGCAACCCGTAGGCCACAGGTTACAGAGGAGGCCACTGAAGAGGCATCTACTGTTTACAGTTCCACCAACACTTTCACTACTATGACTCCTCCTGTCACCACCCGTCAGCTCCAACCGAGCACCACTCAGCAAGCCCAAACAGAACGCACTACCATCGTTACCACAGATATTGTTCAGGTGCTGCGGACGACACCCACTACAGCCCAGCATCCACTTACCTCCACTACTGGTGGACCACAGGCACCCAGTACATCTGATTCTGCTGACACTACCACCTTGCACTTAGAAACCAGCACAGCAACTCCAGGGAACACTACTGTACATGGCAGACGTGCAACAACACCTTACAGTAAGAGCACCTCGACCAAGACCACTGTGGTGGAAACCACAAGGAATCACACGGACAAGAGCAGCACAGAGATGGGAATAACAACCACGCAGATGCCATTTAAATCAACAGCATTGCCAGATCATGTTTGTGGGCCTCAGACTTGCGCAAATGGAGGCCACTGTATTAGATCATCTAAGGGAAGTTACCACTGCCAGTGTCTGCCTGCATGGACAGGACCATTCTGCACCGAACatttGGATGAGTGTGTGAATAGTCTGTGCCCCCAGGGTTCATTGTGTGTTAACACAGGTGGATCTTTCAGCTGTAAGTGTTCCCTAGGCTTTGACTTGGAGGATGGCCGCAGTTGTACACAAGTGAAGACATTTTTGGGCACTTTCACTGTAAATACCTCAATGCATCTCAGAAGTTCAGGCCCACATGAGCTGCACAGAGAGATTTTACAGCTGCTTAATGCCTCGCTCTCCATTTTCCATGGGTACAGACGTTCAACTTTACATAAAAAAGATGGAGGAGATGTGCAGATCTCAGCGGTGAGCATGTTTTCACTCTCCACCAATGTAACCAGCACGGATGTCTTCAACAGCATCCAGATGTCCCTGAACAACTGCAGCCGGACGTACTCGCACTGCACCATTAAGCTTCAGCACCATCTCTCCTATCACGCGGAGAGCCTGTGTTTGGCCCAGAAGACCAAATGTGATTTGCAATACTCTGAGTGCACGGACACTAGCGGGACCCCATACTGTCAGTGCAAACCAGGATACTTTAAAAAGAACCCAGAGGACATGACCTGCAGAGactGTGGAGATGAATTCAAGCTTGTTAACGGCAGCTGTGTTGAGTGCATGTTTGGATTTGGAGGTTTCAACTGCAATAACTtCTATAAGCTGATAGCTGTGGTGGTCTCTCCTGCTGGAGGAGCTCTTCTGTTGATTGTCGTCATTGCACTTATAGTCACCTGCTGCAAAAAGGACAAAAATGACAtcaacaaaataattttcaaaagtGGAGACCTTCAGATGTCGCCCTACGCAGAGTTTCCTAAGAGCAATCGTGTGTCTATGGAGTGGGGCAGAGAGACTATAGAGATGCAGGAAAACGGCAGTACCAAAAATCTCCTGCAAATGACAGACATTTATTACTCGACTGCACTGAGGAACTCTGACTTGGAGCGTAATGGCCTTTATCCATTCTCTGGTCTCCCCGGTTCGAGGCATTCCTGCATCTACCCAGCTCAGTGGAACCCTTCCTTTATAAGTGACGATTCACGGCGAAGGGACTACTTCTGAATGCTTTAGCCAGCAAACATGCAATTTGATACTGCATATAAGCTCCCTTTGCATGGTTGGACCTGCCGCAGATCCCGGAGCTGGATACTGACCACTAAAGGCCTTTGAATGTGAAAATGAGCTGGCAGGAAAAGACCATTATCTGTGAGACTGGAAGAAAGCCGCAGAAGCCTGTCTGGGTCAATTTAGCATTTGAACACAGTGCCACAATAAGACTTTAGTTTCTGGTGTGGAGCTAATGAACTGATTTTCTCACAGCTCCTTGTAGAGTGTTTATACTTAAGTGGAAATCAGTGAAATTAGGATAACACCATAAGATGTCTGCAGGCTGCAGTTTAACTTTGACATTATAAAAGTTTGCACTATGAACTCCTCAAACAGATATTATCTCAAATGGAAAAAGCcataaatgtatcatatttatACCTGGAATAATGTACCCAACTGGTTTGTCCTGTGTTTTGTGCGCGATGGGGTATCTGTATGTCTGTTTGTGTATGTTAATCAAAagttaaagggatggttcactacaaaataaaaaattctgataCTGTGTACTCACCAAAAAACATACCCAAAACATAGGAATGTTATTGTCCATCATCAGTATGTTTATTGGTTCTTTTTAGAGCTTAACATTCCCTGGTCACCATTCACCTACATTGTGTGGAgtagagcagcatgaacattgtTTAAAGCATCTCTTTTATGTACCagcttagaaaaaaaatgtatttggaacGATATGAGGGTGTGTATAGTATGATATTGTTACATATTTTGGGTAAACCATCTCTTTAATGCTTTGCGGTGGTATAGTTTGTATCGGAGAAATGTGAGATTTTGAAACAATATTACTGGATGCAGCATTCATGTGAAATGTAGCAAATATTGCCACAAGGTATTACAGTTTGTTTGAACAACAGTAATAATCATAAAACGCAGTGCTGCCTTCGttgtttcttaatttattttatttaagttttctGTATCAGATAAAGATACTGTAGTATGATCTGAGGACCTCCCATGTGTTTGTATGGATGCTTGGTGGTGCAAGAGTGGATGGACTTCACCTGGTTCCAGGTGTCCATTTCCTTTTATCTAACGTGTGTTCTTGTGAGATGTGCTTTATTTGTAATCTTTAATATCAGACACTGCTTTCCTCATTAGCATTTTTCCCTCCTCTGTGGATGGACACTTGAATCTGGCGTTGTAGTCagaattgtattgtaaaataaaagaaattaagtaTGA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24472 HEG; protein HEG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 216462 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 219124 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 221760 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 729912 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 1118022 17641910 ~ 17642438 (+) True G71167
TU105772 lncRNA downstream 45399 18817138 ~ 18892052 (+) False G71442
XR_006251757.1 lncRNA downstream 118184 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA downstream 121812 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 208574 18980313 ~ 18985811 (+) True G71457
TU105880 lncRNA downstream 479100 19250839 ~ 19251157 (+) True G71509
XM_043248576.1 mRNA upstream 194 18742810 ~ 18760266 (+) True slc12a8
XM_043248577.1 mRNA upstream 194 18742810 ~ 18760266 (+) False slc12a8
XM_043248578.1 mRNA upstream 194 18742810 ~ 18760266 (+) False slc12a8
XM_043248579.1 mRNA upstream 194 18743030 ~ 18760266 (+) False slc12a8
XM_043248580.1 mRNA upstream 194 18743032 ~ 18760266 (+) False slc12a8
XM_043249697.1 mRNA downstream 2021 18773760 ~ 18791366 (+) True kansl1l
XM_043249696.1 mRNA downstream 2021 18773760 ~ 18791366 (+) False kansl1l
XM_043249698.1 mRNA downstream 2370 18774109 ~ 18791366 (+) False kansl1l
XM_043248488.1 mRNA downstream 21342 18793081 ~ 18884325 (+) True map2
XM_043248492.1 mRNA downstream 21342 18793081 ~ 18884325 (+) False map2
XR_006251718.1 other upstream 72218 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other upstream 72237 18682672 ~ 18688223 (+) False lmln
XR_006251742.1 other upstream 119280 18635106 ~ 18641180 (+) False plcd4b
XR_006251851.1 other upstream 141073 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other upstream 141073 18611996 ~ 18619387 (+) False tfcp2l1
TU105802 other downstream 129890 18901629 ~ 18907047 (+) False cps1
TU105807 other downstream 145831 18917570 ~ 18920415 (+) False cps1
TU105976 other downstream 849545 19621284 ~ 19621493 (+) True G71585
TU106041 other downstream 937646 19709385 ~ 19714402 (+) False ormdl1
TU106423 other downstream 1653262 20425001 ~ 20750851 (+) True G71825

Expression Profile