RNA id: XM_043248578.1


Basic Information

Item Value
RNA id XM_043248578.1
length 3486
RNA type mRNA
GC content 0.45
exon number 15
gene id slc12a8
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18742810 ~ 18760266 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAGGCAGCCGTAATGCTAAAATTCCTAAACTGATATCAAACTGTAGGATCAAACGGTTTTAGACAATGTGCCGTGGTTAGTGGCGATTTAGTGAGCTGCTTTTTCGATGGTTACTTCAAAAGCAGAAGGTGTGACGTATAcgtgcaaataaaacatttattcattttgatttactTTCATCTAAATGAATCGTTCGAAAGAACCGATTCGCGAAAATGAGTCGGACCACCCAGCTCCTCAGGTGTGCGTGTTTGTGCCTCTCTCGCGTTCTCCACCTGCTGCTGCATCCGGGAGCACAGCAACTGTAGGGCCCGTATCCCTGGCGTTTCTGGTTGAGCTTACAAGGACCGCGCTGCATAAcgttaaaCTGCTGTTATCTTGCCCAGGAGGGAGCATGAGTCCTCAAGTCCAAGAGTTATTTCATGAAGATGCACAGCTCTTCGTCTGGGAACCTGTTCTTTTTGGCACCTGGGATGGAGTCTTCACTACCTGCatgattaacatttttgggGTGGTTCTCTTTTTACGGACTGGCTGGCTTGTGGGTAACACAGGTGTGTTGCTGGGCATGCTTCTGGTATCCATGGTGGTATTAGTCGCCTTGGTTACGGTGATGTCAGGCATTGGCGTGTGTGAGTGTTGCAGTGTTGGTAACGGTGGGGTCTACTCCATGATTTCCACTGTGCTTGGAGGAAGGGTTGGAGGAACTGTGGGACTCTTGTATGTGTTTGGACAGTGCGTGGCTGGAGCGATGTATATCACTGGTTTTGCCGAGTCCATTGCGCAGGTGCTGAACTTACAGAGCATGTGGGTGGTGAGGGGAATCTCTGTGGCCGTTCTGATTGGTCTGCTCGGGATTAACCTGGCTGGGGTAAAATGGATAATACGCCTTCAGTTGGTTCTGCTAGGCATATTGGCTATGTCCACTCTGGATTTCGTCATCGGGACATTTAGTCATCTAGATCCAGAGCATGGATTCGTTGGTTATACAGAGGATCTGCTGCGTAAGAACACGCTGCCAGACTACACAGCTGGCGAGACTTTCTTTACCGTGTTTGGGGTTTTCTTTCCTGCGGCGACAGgtgtgatGGCGGGATTCAACATGAGCTCTGATCTCCAGAGGCCCGAGCACAACATCCCCGTGGGAACTCTCGCTGCAATCTGCACCTCGTGGTTCCTGTATCTCGTCTTTGTGTTCTTACTGGGAGCCATTTGCACCAGAGATGCGCTGCGCTTTGATTTCTTAATAGCGGAAAAGgtCTCCTTGGTTGGTTTCCTGTTTTTGCTGGGCCTCTACATCTCCTCCCTGGCCTCCTGCATGGGCGGCCTTTATGGTGCACCCAGGATCCTTCAGTGTATTGCCCAGGAGAGAGTCATCCCCGCTCTCGGATTTCTTGGGAAAGGGCGAGGGCCCAATAAGACACCCGTGGCTGCCATCTGTCTGACCAGCTTGATCTCCATGGCCTTCATCTTCATTGGCCAGGTCAATGTACTGGCTCCCATCGTCACCATCAACTTCATGCTAACCTACAGCATAATTGATTATTGCTATTTCTGTGTGGTAAAAACCCATGAGATGCAGGTCCAGCAAAGGACGACACTGATCAGGAGGTCAAGCTCAAGAAGGTCACTGGTGTCCAGCACTCAACCCCATTACGGCAGCAGTGGAGCCATCAGTGAGCCTGTGAACGGCACACTGCTGGAGTTCACCAAAGACATGGACCAAATATTTTCATTGCCCAGCATGGActctgatgaacagaaagtttcTCTTCCTGCCTCCAAGACCCGGGGAAGGAAGTCAAAGATCCCAGCTAAAGAAACGCTGATGAACAGTTTTAGGTTGGACTTTAACAGCAATGGAGCATTAGATAAAGGAAAAGATGGGAGGGAGCTGGAACAAACAATTGGATTAGATGATAATACCAGCAGCCAGATAGGATTTATGGAGTCTGACCTTACGACAGAAACAAAGAGGAAACTGTCTTCGGGCTCAGTTGAACTTGATCAGCTCGCAAGAGAACAGTTAGATAGAAATGGTTCAGAAACAAATCTTGAAGAATCAGAAATAAGATCAATCCAGGGTTCAGTCTATGCCAGATTTTGCAACCACTGGATTTCATTAGTTGGTGCATTGTGCTCCTTTATGATAATGTTCATTATCCAGTGGATGTATGCCTTGATTAACATTATAGTCGCCCTTATCCTCTTTCTCTACATTGGAACAACAAGCCCAGGTTTGTCAACAGGTGCAGCAGCTCACTTTAGTTTTTTCAGGTGGCTCAAGACTTCACTGCAGAATTTGGAGAGGCAAGAGGGGGCCCTTCAGGACCAGATTGTGGTGACACCCTCTTTGTCAGCTGTAGGCATGGAAACCACACAGCTAACAGAGGAAAATGCAGACTTTGCCTTCCGTGATCGTTACCATCACTCCTCCTTTATCACCACCACAGACAAGATAGTCCATCCTCAGTCCAACTGAGCATGTAACAACTGTGCCCTGCTAACCAGCTGGATTGAAAGAATGGACACATTGGACTAAATCATCActcacttaaaatatatattttatttactgcatTTGTCAGGTAGTACTCGGAGGACTGAGCTTTATTTCCTGGAAAATCTGAAGGAAACTAATAATGCTTGTCTGTTAAATCGGGAATGTGCAATCAAGTCATGCAATGTGAACTAATTTGCCATCAATATACTTCTTTAGTGAAATGCTTGTATAAGGTGTAATATGAGCCATGggcatttaatttttagttcATAAGTAAatcttgtcttttattttgattgaccCCCCTGAGGTCAGGACACTCAGTGTTGTAATGTGCTCCCTCCAACCTTCTGGccaagtaaattatttttttctttccagataatttctttttgattacTGAAATGCAGAATTCATATAGGTTTAATGAGCAAACCTATTTGCATGCTGCATGTCTGTTTACATTGCAGTCAAGTTGAAGTTTCTGCACATCAGTTGCTTTAAACAGGAGAACTGTCATCAtctactcaccttcatgttcaTGCAccgaacgttttttttttttttttttttttttcagtggaacaAAAGTGATTTAACGTAAGAATCAAAAGCTGTTATTTCCATACTGTGAAACTACGTGGTGATCTGTCAGTCCCGAAACCTAGCGATTGTATGGAAGGTTGGGATTTGAGTCCAGGTCCCCTTGCTTTCTAAATGAAGCTCATCATGACAGTAAAGTGCAATtcacattaataatgaataaactgCTGTGATTACATTTCTAGTTCAGGTGCATGAAGTTTAGCTCCGTTTTATGGTCATCCATGCAAATGCAAgctctttttaaatacaattgcCAAGTAAGTTGCATCACAGGTGCAAAATGTGTAAGGCTTTTAACATGTTCAATTGTATGTTTCTCCCAGAGATGTCTAAAATAGGGAGCACGCGATTTTGCGTAGTGTTAACGCAAACTGG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 198812 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 201474 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 204110 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 712262 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 1100372 17641910 ~ 17642438 (+) True G71167
TU105772 lncRNA downstream 56872 18817138 ~ 18892052 (+) False G71442
XR_006251757.1 lncRNA downstream 129657 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA downstream 133285 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 220047 18980313 ~ 18985811 (+) True G71457
TU105880 lncRNA downstream 490573 19250839 ~ 19251157 (+) True G71509
XM_043249454.1 mRNA upstream 2754 18734419 ~ 18740056 (+) True znf148
XM_043249398.1 mRNA upstream 9797 18721173 ~ 18733013 (+) True snx4
XM_043248797.1 mRNA upstream 34617 18692575 ~ 18708193 (+) True osbpl11
XM_043248184.1 mRNA upstream 53268 18682672 ~ 18689542 (+) True lmln
XM_043248163.1 mRNA upstream 60608 18675151 ~ 18682202 (+) True lss
XM_043248574.1 mRNA downstream 194 18760460 ~ 18771739 (+) True heg1
XM_043249697.1 mRNA downstream 13494 18773760 ~ 18791366 (+) True kansl1l
XM_043249696.1 mRNA downstream 13494 18773760 ~ 18791366 (+) False kansl1l
XM_043249698.1 mRNA downstream 13843 18774109 ~ 18791366 (+) False kansl1l
XM_043248488.1 mRNA downstream 32815 18793081 ~ 18884325 (+) True map2
XR_006251718.1 other upstream 54568 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other upstream 54587 18682672 ~ 18688223 (+) False lmln
XR_006251742.1 other upstream 101630 18635106 ~ 18641180 (+) False plcd4b
XR_006251851.1 other upstream 123423 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other upstream 123423 18611996 ~ 18619387 (+) False tfcp2l1
TU105802 other downstream 141363 18901629 ~ 18907047 (+) False cps1
TU105807 other downstream 157304 18917570 ~ 18920415 (+) False cps1
TU105976 other downstream 861018 19621284 ~ 19621493 (+) True G71585
TU106041 other downstream 949119 19709385 ~ 19714402 (+) False ormdl1
TU106423 other downstream 1664735 20425001 ~ 20750851 (+) True G71825

Expression Profile