RNA id: XR_006251761.1


Basic Information

Item Value
RNA id XR_006251761.1
length 2653
RNA type transcript
GC content 0.53
exon number 26
gene id LOC122351499
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4792424 ~ 4822965 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTTGAATTCTGTATATCTTATGCTAATAAGTGTAGACACAGTGGATCAGCTGGTACGGTGGGCAGGTGCACGGCACTTGCGCGAGCGCATCATTATCCGGAGCGTGCTCGCGGAGATCCGGGGCTGGCCACCGCCTTCACTCGCCGCAGCATCAGAACCCTCAAGGACAATGAGCTCCGAGCGAGTCACCGCATCCATGCGTTAACCTCGCGCTATTCCAGAGACCAGCTATGAATCATGTATGTGATCGTACTTTCAAATCTGCTCGCGTGCATCCTCGCTTCCTGCCTCCAGCCGTCCGTGGCGTCAGCGTCAGCCGTGTCGGAGGCTGAGCTCCCCGGGGAGGCAGTGTCATTGCTGCTCCAGAAGGATGATGCTGCAGCCGGACAGACGCACAACGCCAGCGGGCCGCAGGAGACACTCACATACCCGTCTCGCCTCATCTACTACCGGAACGAAGCTTCGGAGAGCACCTACCGTGACCTGAACACTCGCGCTAAAATTCCTGACCCACATGGACAGGAGGTCCATCTCGCTCAGGCTTCATTTCAACTTCAGGCCTTTGGATCACAATTCATTCTGGACCTCTCATTAAACAATGACCTGCTGTCCTCAGACTATGTGGAGATATGCTATGAGAATGGGAAGCCCATCCTATGGAAGgGTGGAGAGCACTGTTATTATCACGGCCAGATCAGAGGGAATGACAACTCTCGTGCAGCTCTGTCCACTTGTAACGGTTTACATGGCATGTTTGATGATGGAGTCCATGTGTACACAATTGAGCCACTTAAACAGAATCACTCTATGGAGGGAGCAGCGAGACCACATGTGTTACGCAGGACCACTATCCTGCAGCAAACCACACCTGCAGGAGAGGAAGgCACGGAGGAGGATTTGTCTTGGCTTCGACGGAGGAAAAAGAGAGCTATGCCGAGGAACGTGTTCGAGGAGATGAAGTACATCGAACTGATGATCGTCATTGACCACAGCATGTTTAAGAGACTGAAGACCAAGCAACAAACACGCAACCACGCCAAATCTGTGGTCAACCTGGTGGATGCTATCTTTAAGGAACACCTGAACACTCGCGTGGTGCTGGTGGCGGTGGAGATCTGGACGGACAAGGATCACAGTCCCGTTAGCGTGATTCCGTTCGAGATGCTGCGAAACTTTTCCAAGTACAGGCAGCAGCACATCAGGCAGCACGCAGACGCAGTGCATCTGTTCTCtaatGTGACGTTTCACTACGCCCGGAGCAGCCTGGCGTATTTCGGAGGGGTGTGTTCCGTCAGTCACGGGGTTGGTATCATCGAGtttggCTCTACGTGGACGATGGCACCTCTGCTGGCCCAGAGTTTGGCTCAGAATCTTGGCATTCAATGGGATTCAGTATCAAAGAGAAAGGATTGTGGGTGCACAAACTCCTGGCTGGGCTGTATCATGGAGGACACTGGgGTCCAGCACCCGCGGACTTTCTCTAAGTGCAGTATCACTGATTTTAAAGAGTTCCTGTTGATGGGAGGAGGATCCTGCCTCTTTAACAAACCCAGCAAGCTGTTTGAAGACACGGAGTGTGGAAATGGATATGTGGAAGTGGGGGAAGAGTGTGACTGCGGACCGAGAGAAgagTGCATTAAAGAGTGCTGTAAAAAGTGTTCTCTGTCTAATGGTGCTCACTGCAGCGACGGACCCTGCTGCAATAACACATGTCTGttCTATCCTCGAGGTTACTCGTGCCGCTATGCAGTGAATGACTGTGATATTTCAGAGACGTGCTCAGGAGACTCAGGGCTGtgccCTCCCAATCTACACAAGCAGGACGGTCACTTCTGCTCGCTCAaccagGGACGCTGCTATGCTGGAGAGTGCAAGACGAGAGACAGCCAGTGTAAATATGTGTGGGGACCAAAGGCTGCGAGTTCGGAGAAGTTTTGTTATGAGAAGCTGAACACAGAGGGCTCAGAGAAGGGCAACTGCGGTCAAGACGGAGACAAATGGATCCAGTGCAGTAAGCATGATGTGTTTTGTGGCTATCTGCTGTGCACTAACACTGGCAGAATGCCTCGGATTGGGACTATGAAAGGAGAAGTCACTCCCACAAATTTCAACCATCAGGGCAGACTGATCGACTGCAGCGGTGGTCACGTCTTGCTGGATGATCAGACCGATCTCGGGTATGTCGAGGATGGGACTCCATGCGGCCCGTCTATGATGTGTCTGGACAGGAAGTGCCTCCCTATTCAGTATCTGAACCTCAGCTCCTGTCCCTCCGGACCCAACGGACACGTCTGTTCCAGCCACGGGGTTTGCAATAATGAGGCGACGTGTACGTGTGACACAACCTGGGCGGGGACGGACTGCAGCATGCCCGACCCTCCGAAAGAACCGCCCCCTGATGAAGACGAGGGACCCAAGGTCCTGAGTAAACTCAAGAGGCCTTTGTGACATGACATGCGCTCTTCACTCCCTGTCTCTTTGCGGAGGCGCTGGCTGACAAACGCACCTGGTACAGAAACGTCAAACGCCGCGGGTACGACCCAAACGCTTCTGCCATCTAGTGGAAGGAACGCTCCAATCACCAGAGCTTCTCTATTCAGCTGGGCTGCTGTTCTTGCTGCTCTTTTCTGGCATTAGTTATACTTGAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100187 lncRNA downstream 158609 4636010 ~ 4636342 (-) True G67747
TU100185 lncRNA downstream 176083 4615858 ~ 4618868 (-) False pde11a
TU100165 lncRNA downstream 239201 4552424 ~ 4555750 (-) True G67730
TU100168 lncRNA downstream 243076 4551237 ~ 4551875 (-) True G67733
TU100138 lncRNA downstream 367305 4427288 ~ 4427646 (-) True G67712
TU100380 lncRNA upstream 121641 4944603 ~ 4954082 (-) True G67847
TU100466 lncRNA upstream 182332 5005294 ~ 5006781 (-) True G67904
TU100474 lncRNA upstream 204082 5027044 ~ 5027597 (-) True G67911
TU100476 lncRNA upstream 227467 5050429 ~ 5051292 (-) True G67913
TU100488 lncRNA upstream 266220 5089182 ~ 5089393 (-) True G67923
XM_043248535.1 mRNA downstream 3212 4781700 ~ 4791739 (-) True casp10
XM_043248641.1 mRNA downstream 14274 4774995 ~ 4780677 (-) True prkra
XM_043249748.1 mRNA downstream 128297 4615842 ~ 4666654 (-) True pde11a
XM_043249759.1 mRNA downstream 223835 4557126 ~ 4571116 (-) False nfe2l2a
XM_043249758.1 mRNA downstream 223836 4557126 ~ 4571115 (-) True nfe2l2a
XM_043248522.1 mRNA upstream 29987 4852949 ~ 4859666 (-) False stk24a
XM_043248521.1 mRNA upstream 29987 4852949 ~ 4859666 (-) True stk24a
XM_043248524.1 mRNA upstream 29987 4852949 ~ 4858639 (-) False stk24a
XM_043248523.1 mRNA upstream 31660 4854622 ~ 4859666 (-) False stk24a
XM_043248520.1 mRNA upstream 37930 4860892 ~ 4869233 (-) True slc15a1a
TU100077 other downstream 673112 4120548 ~ 4121839 (-) False G67668
TU99606 other downstream 1600459 3189847 ~ 3194492 (-) True G67358
TU99607 other downstream 1602011 3189847 ~ 3192940 (-) False G67358
TU99608 other downstream 1602011 3189847 ~ 3192940 (-) False G67358
TU99433 other downstream 1958328 2814935 ~ 2836623 (-) False LOC122352064
TU100372 other upstream 33688 4856650 ~ 4945665 (-) False LOC122351456
TU100414 other upstream 136755 4959717 ~ 4983747 (-) True G67863
TU100469 other upstream 187551 5010513 ~ 5014735 (-) False dbi
TU100470 other upstream 187551 5010513 ~ 5014813 (-) True dbi
TU100475 other upstream 205964 5028926 ~ 5029475 (-) True G67912

Expression Profile