RNA id: XM_043248590.1


Basic Information

Item Value
RNA id XM_043248590.1
length 5180
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC122351503
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15998141 ~ 16006044 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaataatcgCATCTCAAATGCACAAATTAGACTTGATCTGTTGCTTGGATTTAGATTAATTttaaggatttaaaaaataaatatgacgcTCTGTTTTGATCTGTATGTAGACTGGTTTTAAGCTGCAGATTAGATGACACCTTATATATTGGCTTGTCAGAAAAAATGACCCAGTTTCCTCTGAGCCATCATACTTATTGGGATTCTTTACCTCCCTATTTCTAGCTTTTTTTTGCTGATAGATGTCTTCACTGGGTAAAGAATCTGAGACTGACAATGCTGCTGTAATGAACAAATGTGTTTCATAAGCTTCGAGTCATGCAACAAAAATAGtcagaaatttaatttttttaaatattttatatatatttgtgtgtgtgtgtgtatttatatttatatgtatgaaagaaatgtgaatTCACGTCTGTACGGTAGAGCATGCAGCTCAAACAAATTGCATGAAGAATATGGTTGAACTGGGTCACCAAAGGTCACTAGCAAGGACATTGGTTAATATAATGGGAATAAATACACAGCCTAAAGgatgtttatttacattataaacttatatttaattattgcaggtttgtgTAATATACTGAGTTTGTGTTTGattcttgattttattcatttaaggaATACTGAATCTGTTTTCGTTCAAGTAAGATAAGTAATGGCATGTTGACACTGAAGGAAGAACAACAGTAGCTTAGCTTCATGTTTCTCccaatttctctcaacatggcaacagcTGTCAGTCAATATATGTGAATCaaagtgaaattaattaaactCCCATATACTCCCATTATAAAGAAATGTGTTACTTAAAAAGGTAATTTTATTAGCTAAGTATCTTATTTTGCCCCCAGACAGCTGTTGATAATGTTTATCGAGCAccgaataatttctgaaggatcatgaatCAAATGGGTTCACTACACAGATGTGGCAAACCGTATCAAgtacgtgattttttttttacgttattgTAAAGTTTAACTCATGTAACGTTAGCCATGTGCAAGAAGGCATTTCATTACAAGAACCCCTGCAGAAGCAAGCACTGATGCTGTGAACCTCTGCGGTCTCTGGGCTTTATCAGATGTCTTGATTAATTCAATTCACTTCAGAGATGTATGAAGAGCACACTTTGATATACCTACAGCCAGTATCTGCGTAACGCGGAAGGTCCTCAAACTCCCACGATTGGCATCTTGTTGATTAGACATGTGACTCACGGAGCTGCTTATCCAATAGCTGAACTTTATTTTCTTATGTCAGATTGAATCTGTTCTGTAGTCAGCTAGCTGAAAGCATTATCAAGATTTGCAATTGCTTGCTTGTTAATAATTCgtaattaaattcataaaaaataaataaatacccaAGAATTTATTACTGCAAGGATTCTATATATCCAAATTGATTGAGGAAAATTATAATGtagaaaagtacaaaattagaGCAATTTCAATTCAGTGCTTGATTGGCCCTGTATGTGCAATATGGTTTGCTCTTCTTGAATGTATAAGGTGCAGGTTCTAAAACTCATTTAAGTTTACATTGTGACAAATAAATACCTATACATTTGGAATATGGTGAACTCATTGTGCATGTTCATTTTATACCTCACACACCACCAtggttaatttatttagttctgTACCGTTCCCTAGCAACGGTGGGACAACTAGCAAGAGAAGAAAAATCGAATGCTTGTGGAAGAGGAGGGTAGTGACAGAGGAGCAGGTGACAGCCGCAGGTTCAAGCCTTCTCAATAGCATCAACAAATTCTCTGCAAAGATGTCTACTGGATCTCCAGTGAGCAACAAGACTTCCCCTAGCACATCTCCACAGCCTCCTCTAAGCCCATCAGCACAATCAGACACAGAAGGTCATGAGGACTCAAAACCTACTCCTGCAGCCTCTTCATTTTCCTTACCTTGTTGGGCTACCCAGGCCCTATGTGATTTAGCAAGATGTGAAACAGACCTCAGGCGACTAAGAGAGCAACAAGTGACTGAAGCACAGTCAGTAGGTCGAGGTGTGGAGCGTGCACTGCTTGGAGCACAAAGGGAGGAGCGTCGTCTACTGGAAAGGGTAGAACAAGATCACAGGGACCTACAGCTCAGACTGGAACAGGTGCAGAGGGACAATGGAGCAGCCATAAGGGTTGGACAAAAATTGGTTGACCAGCGGTTATATAAAGTCATTAAACTTAGAGAGATAATAAAGATATGTGGTGATTGTAATAAAGATCGAGAGGGGGATCTGAAGCGGGACCAGCTTCTTAAGGGCGTTCAAGAACTAGTCCAACCTTGGGAAGTCTCACTTACTCTCAAACGTGTGTCTTTTAAGCCAAGTGCCCAACCAAACGCTGTAACTTTTGGTGAAATCAATGTACAAGACCACTACATCCATTTTCCTGTTGGAGGCTGTGGGCCGCAGGGGCAGTTGTGTTCCCTCCATGCCAATGAAGCACGCGGTGGGGCTCATGTCAGTGGAGAGGGCCAGAGCACACCTGCTGGAACAAGTCCTTTGCAAAACCAAGTCTTATCTCCTGGGCCTAACCCAAGGCACTCAACAACTAGTAGTGGGAACTTGAGGGTTGTCCGGAAGCTCCGTTTGTCAGCCCGAAGTGATGAAGAATCAGGGGAAGAGGTGAAACGTCAGTCCCCACAACTGCGTCAAAGATCTCCTAAACAAGTCCTACGTGAAAGGGATTCATCACAGGAGGATGAGTGTGAATCTCCTTCATCTGAATGCAAAGGAGATGAGCTCTTTTTGGCTGTACCATCACTTAGTCATGGCGAGGCAGAGGGTCAGGATTTTGCCCATGTACAAAATGGACCAATCACACAGTTTGCTTCACAGAGAGCAAGAAGGCAACGAGAACTCTCTCCATCTCCAGAACAAGGTCACCAAGAACAAGGTGGCTGGTTCTTGCATCAGTTTGACCATAAAAATCATGCCAGACGGACCGTATCTTCATCACTGCAAAGCCCCAGAGAGATAACCGCTAATCAAGGCACCAACAACCACTTCCTTCGTGGTAGGTCTTGTTCTCAGTTAAGTGCATCCTCAGATGACCAGCCACAAAACCGTGCACCATCCCCTGCAGACAGTGTAGATTCTGGATACACTTTCATTGTCAACTCCCCCAGAGATTTCACCAACTCCCTGCGTCCTACCGCTCGCCTCTCCAGATCGGCTGCTGATCTTTCCTATTGCAACAGACCCCTCAGTGAATCCAAAACACACCCGTCAAGCACATGGAGTGTAACTAAGAGTCATATGTCCTCACTCTCAAGCCCCACCTTCCAAAAACGAAACGAGGTGTCACGGACCAAATCCTGTCACAGTCATGGTAACTTCTCTCAAAAGAACAACCAACAACATGTTACTTGTTCCAGTAGAGTGTCTCGTTCACTCTCTATGTCTGTTATAGATAACTCatctcagaaaaaaataaaccacttCACATCAGGACGGCAAAATTCTCTAAATGAGAACAGACTGCGTGGAGAAAGAAGTGAGCCAGCTCTTCTGGAATTAGAGGAGGATGCCGAATCATTGGCACCAGAAGAGGTGCATCTTGTCCGGCAGTTTGGTAAACAAGGCTCAGGACGTGCTGATCTCACACTGCCCAGTGGTGTCCATGCAACACCACAAGGCCAACTATTCCTTGTGGATTGTGGGAATGCTCGTGTACAGGTAACTGATGTCAATGGCAATGTCCTACAACAAGTGACTTCTCCAAGTAATGACTTGGGAGGTTCCTCACGACGTTGCCGCAATTACTTCGATGTGGCTGTTAATGCCAAGGGTTTAATTGCTCTGAGCTGTGCAGCTGAAAGGGCTCTCCTGATCCTTAGTCGGCATGGGCGTCTCCTCCAAACATTTGGAGGGGGACCCTACATTGCAGGAGTACCTCGAGATGAGTTGGAAGCACCGAGGGGAGTGACTGTCACCCAAAGAGATGAATTCCTAGTTGCAGATATACGAAAGGGCACTCTTACAGCACTAAAACTTGAACCTAAAACTGGTTCCAGATTGGAACGCACTGTAGTTACCGGTTTCCACCGGCCTTACCTGGTCACAGCATGCTTGCACTCTGGTCTTGTTGCAGTGTCTGAGCGAGGCAGTGAAATGGGGCAGGAGCCTTGTGTGAAGATTTTAGGACCAGGATGGGACACTCTACGAATCCTGGGTGTTTGTTCAAGCTTAGGACCCGTACTCTCCTGTCCGTGGGGCCTCTGCATTGATAAGGATGGGTCTGTTTTGGTGGCAGACTGGGGAGAAAAACATCGGGTGCTTCTATATCCCCCTGATGGGGCAGGACGAGTGATTGTGTCTGATGGACTGAGCAGCCCTCGTGGACTGGCACTTTTACCTAATGATCTCCTCGTTGTGTCAGATAGCATGCACCACTGCATTAAAATTTATCAGTACAAATGAAGAGTTACTACAAAGCTTAAAAATCAAAATCAGGTAAAACTTTAGTATAGGTATCAGTACTTACTATTAacctagctgcttattagcataacTACTgataacatattggctgtttatttgcaATTACAAAGCACATTCTTTATGACCATATTCTACGTCCCTTTTATCCAGTACCTAAACTGAACATCTACATGACTATTAAGCAGCAGAATTGGACCTTAATGAGATGAATATTTAgcaatatatatgtaatgtatgtgtgtttgtataggCTATGTATAATACAACACTTATCACAGTCACAAAagggattgaaaaaaaaatacttttatacaaAAGACTGAATGCATAGGCTAAATAACCTAGGATTTTTGTGTGTTGTGCTTTGATATTTGTTTTGAATCCCTGGTGATTTTTCTTTGTACTGCACTTGTTTGACTTTGTAATGAGACTATACTGCATGCTATTGATAATAAATAACCTTGCCAGCAGGAGGCAGTAATGATACATCAACATGttaatgcatttgaaaagtATCTGTTCATCAGTgaactcaagaaaaaaaaaaaactcattccTAACACCAATACATAATGGACAAGGCtcctgattattaaaaaaaatgttttttagatgttttctaaaatatcaGAATTTATATGTGAGAATGTCTTTGACTGTTCTTCAAACATAACATTAAAGGAGCTTATAAGTCTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251840.1 lncRNA downstream 44165 15948113 ~ 15953976 (-) True LOC122352066
TU104518 lncRNA downstream 235472 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 353865 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 359705 15628883 ~ 15638436 (-) True LOC122351574
TU104406 lncRNA downstream 576564 15418999 ~ 15421577 (-) True G70581
TU104861 lncRNA upstream 112238 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 599323 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 599323 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 604226 16610270 ~ 16610561 (-) True G70955
TU104935 lncRNA upstream 607073 16613117 ~ 16613424 (-) True G70956
XM_043249419.1 mRNA downstream 19840 15974565 ~ 15978301 (-) True hpxa
XM_043248860.1 mRNA downstream 24580 15966763 ~ 15973561 (-) True LOC122351640
XM_043248861.1 mRNA downstream 31674 15963794 ~ 15966467 (-) True gatd3
XM_043248302.1 mRNA downstream 55051 15940890 ~ 15943090 (-) True olig2
XM_043249362.1 mRNA downstream 65605 15930621 ~ 15932536 (-) True olig1
XM_043248589.1 mRNA upstream 136 16006180 ~ 16024933 (-) True fhip1b
XM_043248160.1 mRNA upstream 86686 16092730 ~ 16097066 (-) True casq2
XM_043248162.1 mRNA upstream 86686 16092730 ~ 16097060 (-) False casq2
XM_043248627.1 mRNA upstream 100715 16106759 ~ 16116264 (-) False slc5a3b
XM_043248628.1 mRNA upstream 100715 16106759 ~ 16116264 (-) True slc5a3b
TU104521 other downstream 226277 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 598704 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 692166 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1744365 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 2058273 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 811096 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 811096 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1229828 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2563711 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3714454 19720498 ~ 19721737 (-) False ankar

Expression Profile