RNA id: XM_043248594.1


Basic Information

Item Value
RNA id XM_043248594.1
length 1963
RNA type mRNA
GC content 0.57
exon number 2
gene id sp9
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4109650 ~ 4112225 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCACTATACAACTCGAGTAGAGAGAGTAAAGCTTCAGCGCACTGTCCCTCAGTCACACCGGAACACTGAGTCATTGTTCTCTTCAACTAGCTGTCTAGGAAAGGCCCTGGATATGGCTACGTCTATACTTGGGGAAGAGCCTCGGTTTGGAACTACCCCTTTAGCGATGCTGGCCGCAACCTGCAACAAAATCGGCAACACCAGTCCCCTCACGACTCTCCCCGACTCCAGCGCGTTTTCCAAAGGCGGATTTCATCCCTGGAAGAGATCGTCGTCGAGCTGCAACCTAGGCTCCAGCCTGCCCGGATTCACCGTCGCCACCAGCCGCAGCACCTCGGGACTAACGACCAGCACCGGCTCGGCGAACAGCGCGTTCTGCCTGGCCTCCACCTCGCCGACCTCCTCCGCGTTCTCCGCCGAGTACAGCAGCTTGTTCTCCAACACGGCGAGCGTTTCCTCGCAGGAGTCAGGACAGTCCGCCTTCATTTCCAAAGTGCACTCGTCCGCGGAGAGCCTATACCCGCGGGTCGGCATGGCGCACCCGTACGAATCGTGGTACAAGTCCGGCTTTCACTCCACCATCTCCGGCGAGGTGGCCAACGGCGCGTCGACGTGGTGGGACGTGCACACGAACCCGGGCTCGTGGCTCGAGGTGCAGAACCCGGCCGGCAGTTTGCAAAGTTCCCTGCACTCCGGAACCCCCCAAGCCATCCACTCGCAGCTCAGCGGCTACAACCCGGACTTCTCGAGCCTCACGCACTCCGCGTTCAGCTCCACCGGCATCAGCCCCACCGCGTCCCACCTCCTGTCCACCAGCCAGCACCTGTTGACGCAGGAGGGCTTCAAAACTGTGATCCCCACGTACACCGACGCGTCGGCCACAAACGCCATGATCTCCGGCGCCAGCTCGGGCATAGGGACCTCTTCCAGGTCCTCCAGGAGATACTCCGGGCGCGCCACGTGCGACTGCCCGAACTGCCAAGAGGCGGAGCGGCTGGGGCCCGCGGGGGCCAGCCTGCGGAGGAAAGGACTCCATAGCTGTCACATCCCGGGCTGCGGTAAAGTCTACGGGAAAACGTCTCACCTCAAAGCGCACCTGAGGTGGCACACCGGCGAGAGGCCCTTTGTGTGCAACTGGCTTTTTTGCGGCAAACGGTTCACCAGGTCAGACGAGCTCCAGAGGCACCTGCGCACTCACACCGGCGAGAAGCGGTTCGCGTGCCCGGTGTGCAACAAGCGCTTCATGAGGAGCGACCACCTGAGCAAACACATCAAAACGCACACCGCCGGAGGCGGAGGCAAAAAGGGCAGCGACAGTGACACCGACACCAGCAACCTGGAGACGCCCAGGTCCGAGTCGCCCGAACTGATTTTAGAGGGCGTAAACCCACGGGTCACGGTCAAAGATCAGTCTCCGCACCACGAGTCCTGAGCTCGACCTCGAAGGCGTTTTCCTCTTTTAGGCGAATCGAGAAAAAGAAACGGGTCTGGAGTACGCGACGAAACTCTTGACATTGCATTGGAACGAGCACTTTCAGTGCAACACTGGCTATTTCCGCCGCGCGCGGCCACAGACGAACGCTTTTTGCTCAGCTTTCAGGACGATGAGGTCCGGTCGAGGCTCAGCGCTTTTAACAGCGGATGGACATTTGCCGCGGAACCGCTGCGGGAACTATAAATAACCGCGGCTGCCGGTTGAGCTAATTGTGTACATATAATCCACAAAAAATAACCTGTTATTTTTTCCCCTGTAAATGTTACTTATGATCGTTTCGTGGTGGATCCTGAAATTCAGGgaattttcttttcctttcgaCGCACTTTGTGGATGTCAGTATGTATGTTACACAgctatttaaaattcatttaaccTTTCCTTTACCTTGctaagaatatataaatgtctaATTGTACAAAGTCACGCTTATAAGgctttcattttgtaattaaagGGATTTAAA

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09199 SP9; transcription factor Sp9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99979 lncRNA upstream 44689 4064637 ~ 4064961 (+) True G67606
TU99977 lncRNA upstream 70828 4038596 ~ 4038822 (+) True G67604
TU99905 lncRNA upstream 77830 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA upstream 123716 3984169 ~ 3985934 (+) False cdca7a
TU99748 lncRNA upstream 279878 3828991 ~ 3829772 (+) False G67448
TU100026 lncRNA downstream 44431 4156656 ~ 4157963 (+) True G67637
TU100030 lncRNA downstream 50131 4162356 ~ 4165072 (+) True G67641
TU100051 lncRNA downstream 95465 4207690 ~ 4208541 (+) True G67657
TU100015 lncRNA downstream 104825 4217050 ~ 4219510 (+) False G67630
TU100017 lncRNA downstream 107750 4219975 ~ 4222171 (+) False G67630
XM_043248534.1 mRNA upstream 123688 3981346 ~ 3985962 (+) True cdca7a
XM_043248533.1 mRNA upstream 128439 3948018 ~ 3981211 (+) False zak
XM_043248532.1 mRNA upstream 128439 3948020 ~ 3981211 (+) True zak
XM_043248084.1 mRNA upstream 164042 3925891 ~ 3945608 (+) True LOC122351193
XM_043249752.1 mRNA upstream 187098 3913638 ~ 3922552 (+) False LOC122352174
XM_043249288.1 mRNA downstream 8302 4120527 ~ 4127013 (+) False scrn3
XM_043249290.1 mRNA downstream 8302 4120527 ~ 4125447 (+) False scrn3
XM_043249289.1 mRNA downstream 8305 4120530 ~ 4127013 (+) True scrn3
XM_043248257.1 mRNA downstream 269299 4381524 ~ 4382885 (+) True hoxd13a
XM_043248255.1 mRNA downstream 273214 4385439 ~ 4387003 (+) True hoxd12a
TU99910 other upstream 126068 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 158339 3948036 ~ 3951311 (+) True G67566
XR_006251861.1 other upstream 186772 3913638 ~ 3922878 (+) True LOC122352174
TU99551 other upstream 913129 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2380255 1713813 ~ 1729395 (+) False bpifcl
XR_006251811.1 other downstream 8302 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 28829 4141054 ~ 4222171 (+) True G67630
TU100016 other downstream 104825 4217050 ~ 4220395 (+) False G67630
TU100101 other downstream 298651 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 444918 4557143 ~ 4562602 (+) True G67717

Expression Profile