RNA id: XM_043248624.1


Basic Information

Item Value
RNA id XM_043248624.1
length 2672
RNA type mRNA
GC content 0.47
exon number 9
gene id ildr2
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16830433 ~ 16845202 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAGAGATGATCTTAAGCGAATAACAGTCCTGGAGAAGATGGATTACATACCTGCAAACTAGACCGCACTAAACTGGATCATGGTTTTGTTACACGGATTTTGGATTCTATTCATGCTATTATCACTGCAAAGCTGTAATGGTGTACAGGTGATTGTGAAAGATGAGAAGAGGTTCGCAATGCTGTTCTCCTCCATCGTTCTTCCGTGTCATTACACCACCCACTCCTCTCAGACCGCCGTGGTGCAGTGGTGGTACAAGTCCTACTGTACAGACCGTACTCGGGATTCCTTCACGTTTCCCGAGTCCCTGGGAGTGCACGTATCTGACCTGGGAGCCTCGTCTCATGTGGACTGCTCTGACAGCAGCCGCACTGTCCGAATAGTGGCCTCAGCGCAAGGATCTTCCATGACCTTAGCAGAGCACTACAAAGGAAGAGACATCTCCATCATTAACAAAGCAGATCTGCGCATTGGACAGCTGCAGTGGGGTGACACCGGTGTGTACTTCTGTAAAGTGATCATTTCTGATGACCTGGAAGGGAAAAATGAAGACCAGGTGGAGCTGCTGGTGCAGGGTAGGACAGGTGTGCTGGATGACATCCTGCCTGAGTTTGATTTGGAGATTATGCCAGAGTGGGTATTTGTGGGAGTTGTCGTCCTTGGTAGTGTGCTCTTCCTGTTGTTGGTTGGGATCTGCTGGTGTCAGTGTTGCCCTCACTCCTGTTGTTGTTATGtacgctgctgctgctgtcctGATACATGTTGCTGTCCAAAACACTTATATGAAGCAGGGAAGATGGCAAAGAGCGGCCAAACTCCTCAGATTGCCATGTATCAACCTTACTACGTTCCTGGTGTTCCTGTGGTTCCCGTGGTCCCTCCAGCTGCATCATCCATCATTGAACCCAAGTTGACTGTAGTGGCTCCTTCAGTAGAAAACAATATAGCTGGAGCAGCTGGCAGCCTATCAGAACTGAGCTCTCTGCATGATGGTGACATAGACTTCAGGCAGACCTATCGGCAGGTCCAGAGGAAGGCACTACCACCCATCAGTGACCACATGGATGAGCCGCATATCCGAACTGCATCAATCGGTCACGGGCTTCGCCCCTCACATTATCAGAGCAATCACTCTCTGGATGAGCATGACAACAGATGGAACTGTCGCTCTGAGCACCTGCCTCGCAAAGCCTTTGATGCTAGGGGGCGCACAGGATCGCTAGATGAGCTGGAAGAGTTTGCAATGTCATACGGCCCACACAGTCGTCGGAGGGGTGACTTCCGCGATCCTCAGCGAGACTTTGAAATGGGTCGAAGGTCGCGGGACCATCCCATGTTTTACCGAGACGGGCCACGGTATTCTCGAGGTGATGATGACCATGGCGACTGGCGACGTCGAGGCTCGCCACCTTCCCCGCCAAAAAGGCGCAACACTGCCGACAGTGAGCGTTACCTCGCTCGCCAGAGGTCTTACGACGATACATACCTGAACACACTGCTGGAGCGCAAGGCTAGGGGCCACGGAGAGCGAGGTGGGAGGGTTGATGATGACAGTGACACACCCTCCAAAGGCAGTTCCAAGAAGAGCAGTGACTGTTACAACAGCAGGTCACCTAGCAACCGTCCCGAGGAGGATGATCCTTTACCTCCGTACTCTGAGAGAGAGGCGGAGCGGTTTAGAACTGAAGAGCATGTAGGGAGGGAACGGTACAGGACTGTTGATCCTGCCATGCGGCCTTTTTCGTACACACGTGCGGCCCACGGGCTGTCCCATACTTTACAGGAGCACAGGGAGGACAGGGACAAATCCAGGAAACTGaCCACTCATCTAAGCAGAGACTCACTAATTGTGTGACGTCATCAGACTGAGCTGACATCACACTAATAACATCATCCAGCTGAAGAGAAATGCCCCAGACACTGTCagaaagacactttttttttttgcaggattAAACAGACATGAAGAGCTTGGGAACTTTTGCTGGTCAAGGGCAAGAAcgcagtgtgtttgtttgtttttattttctgtattgataatgtcaaaaaaaaaaagaagttcttAATTAGTCCTCTACCGCTGCACTAAAAATAAGGACTTAGAAAGGACTTTAAATGATATTCAAGTGCTTTAAACATTCCTTGATATTGTGTACATCTTCAGTACTGTAATGGGACGCTGTCTCTGATATTTCAATATTGCCTTTGCCTTTGTTTGCACTGTACTGTACATTTGTATCAGTGTTAATCAGTTGGCTCTCCAGTGAAGCATGAACAACTGTGCTTTTGATAATGTgccatttatttgcatttcacggttttaaaataatgactttgatATGAACACTtgctgtctgttttatttttctttcccgACACCCTTAGTGTTTTTATGatataagaaaacaaataggctacagtaagactttttttgtttatttgttagcAATACAGAATTTTTGCCGCGCAGGAAACTGGACAGGATACAGAAAAGGAAACGATGATTCTTTCCAGGATGAGATTACAATACCAGGAAACGATCTGATACGAGACCTCACAGGTGTTAAACTCTGTGTTTAGATCTCTGCATCTGTCGCTTTTTTCGTATTGTGccaaagtttatattttaaatgtattatttgcgactaataaaacatactttcCCGCCAA

Function

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0031016 pancreas development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104773 lncRNA upstream 15031 16814830 ~ 16815402 (+) True G70837
TU104742 lncRNA upstream 99072 16729655 ~ 16731361 (+) False G70814
TU104730 lncRNA upstream 214369 16615538 ~ 16616064 (+) True G70804
TU104729 lncRNA upstream 215516 16614685 ~ 16614917 (+) True G70803
TU104728 lncRNA upstream 220313 16609868 ~ 16610120 (+) True G70802
TU104792 lncRNA downstream 21288 16866490 ~ 16867502 (+) True G70841
TU104795 lncRNA downstream 34871 16880073 ~ 16880511 (+) True G70844
TU105030 lncRNA downstream 38440 16883642 ~ 16883901 (+) True G71008
TU105116 lncRNA downstream 287269 17132471 ~ 17135391 (+) False G71061
TU105140 lncRNA downstream 287269 17132471 ~ 17204323 (+) False G71061
XM_043249672.1 mRNA upstream 1181 16824834 ~ 16829252 (+) True gpa33b
XM_043249499.1 mRNA upstream 80732 16745893 ~ 16749701 (+) True mpc2b
XM_043249389.1 mRNA upstream 109846 16713974 ~ 16720587 (+) True gpr161a
XM_043249381.1 mRNA upstream 116607 16699765 ~ 16713826 (+) True f5
XM_043249530.1 mRNA upstream 135971 16684746 ~ 16694462 (+) False ccdc80
XM_043248626.1 mRNA downstream 689 16845891 ~ 16850241 (+) True LOC122351521
XM_043249545.1 mRNA downstream 49221 16894423 ~ 16897838 (+) True lamp1b
XM_043249407.1 mRNA downstream 57876 16903078 ~ 16916144 (+) True med14
XM_043248420.1 mRNA downstream 71565 16916767 ~ 16919211 (+) False si:ch211-218d20.15
XM_043248418.1 mRNA downstream 71566 16916768 ~ 16919211 (+) False si:ch211-218d20.15
TU104753 other upstream 80738 16745899 ~ 16749695 (+) False mpc2b
TU104743 other upstream 99072 16728507 ~ 16731361 (+) True G70814
TU104501 other upstream 1084327 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 1119256 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 1405394 15401128 ~ 15425039 (+) False si:ch211-168k14.2
TU105078 other downstream 71559 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 358595 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 493925 17339127 ~ 17339622 (+) True G71130
XR_006251816.1 other downstream 890804 17736006 ~ 17949307 (+) False lrp1bb
XR_006251864.1 other downstream 1701958 18547160 ~ 18547282 (+) True LOC122352186

Expression Profile