RNA id: XM_043248627.1


Basic Information

Item Value
RNA id XM_043248627.1
length 5347
RNA type mRNA
GC content 0.41
exon number 2
gene id slc5a3b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16106759 ~ 16116264 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTACACACACCGAATGTGAAACCAGGGCGTTTACAGCGGAAGATAAAGAGTGGACGGGCGTTTATAAAAGGCGCGTTTTGGGGCACCATTCATTCTGAAGGAATGAAATCTTCCGTTTCTGAACTTTTAAAGACCTCTTCAACGAACCACGTTCTTCCGCGTTGAAGCTGTCAGAAATTGATGTGGATAATCGCATCGCTCGGACCCCTTCCTTCTTTCGACAGACAAGAGCTGCTCAGCTCTTTATTTCAAGACTGTATCATGAAAACGGAATGTAAACTCTTGCCATTTCTAGACCAGAAGCCAGAGACATCCTGCCCAGAATAACTTGATGAGAGCATCGTTGGATAACCAATCCAATCCAGACCATACACAAACTAAATAGAAATTTAGCAAACCAAAggattttatgtgcttttgctCGCACCTTTACCCaaataagcacatttttttGCAGACAATTGCATTTTGAACGGCGATCGAGGcataaacatgttaaaaacaggAACAGCGATGGAGGCGGCAGATATTGCAGttgttgcactttattttgtgcTTGTGCTTATAATTGGTCTGCTCGCTATGTGGAAGGCCAACCGTAGCACTGTCAGTGGCTACTTCCTGGCAGGTCGGACTATGAATTGGGTGGTGATCGGTGCCTCACTGTTTGTCAGCAACATCGGCAGTGAGCATTTTATTGGACTTGCTGGTTCTGGTGCAGCCAGTGGCTTTGCAGTAGGCGCCTGGGAGTTCAATGCCCTCCTGCTTCTGCAGCTGCTCGGTTGGGTGTTCATTCCAGTCTACATCTACTCTGGAGTTTACACCATGCCAGAGTACCTCTCCAAGCGCTATGGGGGCAAGCGGCTAAAGATTTACTTTGCAGCCCTCTCACTTCTGCTCTACATCTTTACTAAACTCTCAGTGGACTTGTACGCAGGAGCTCTTTTCATTCAGGAGTCTCTTGGCTGGAACCTCTACCTGTCGATCATCTTGCTCATCTCTATGACAGCCTTGCTGACAGTAACCGGTGGACTGGCTGCTGtgatatacacagacacactacAGGCCGTGCTCATGATTGGCGGTGCGTTAACCCTCACCATCATCAGCCTGGTCAAGGTGGGTGGTTTGGAAGGGGTGCGGGAAAAATACATGGAGGCCATCCCCAATGTCACAGCCATCCTGGCTAACAACAACTTCAGTTTCCAGTACACAAACTCCTGCCGGATCCACCCCAAGCCAGATTCTCTCAAGCTCCTGCGAGGACCGCTTGATGAGGACATCCCTTGGCCAGGTTTCATTTTGGGTCAGACACCCTCATCCATTTGGTACTGGTGTGCAGACCAGGTCATCGTCCAGAGAGTGTTGGCCGCCAAGAACATTGCCCATGCCAAAGGCTCCACGCTTATGGCAGGAATGCTGAAGATCCTTCCCATGTTCATCATCGTTATTCCAGGAATGATCTCACGAATATTGTTCCCCGACGAGTTGGCATGCATCAGCCCAGAGCACTGCATGGCTGTATGCGGCAGTCAGGCCGGCTGTTCCAACATCGCCTACCCTCGACTGGTTATGAGCGTGATGCCAGTGGGCCTCAGAGGGCTGATGATGGCGGTGATGATCGCTGCCCTCATGAGTGACCTAGACTCAATTTTTAACAGTGCTAGCACTATCTTCACACTGGACATCTATAAAATGCTGCGCGTATGTGCCTCCTCCCGTGAGCTGGTGATCGTCGGCAGGTTTTTTGTGATAGTCATGGTGACTATCAGCATAGCTTGGGTGCCTGTCATTATTGAGATGCAAGGTGGCCAGATGTACCTGTACATCCAGGAAATGGCAGGATACCTCACTCCACCCATTGCTGCCCTCTTTCTACTTGGAGTCTTCTGGAGGCGTTGCAATGAGACCGGCGCATTTTGGGGCGGCATGACTGGGTTCGTACTAGGCACTGCCCGCCTCTTCCTTGGCTTCATATATCGTGAGCCAAAATGTGACCAGCCAGATGAACGCCCGGCTTTCATCACAGATGTCCACTACATGTACATTGCTGCCGGGCTGTTTTGGATCTCCGGGCTGGTGgctgtgtgtgtcagtctgtgCACATCTCCGCCAGAAGAGGAGAAGGTCAAACGCACCACAATCTGGGGCTTGAAAGAGCTTAAGCACCTCCCTGTAATTGAACGAGAAGAGAAATACAAACTCACTAATTGCAATGGTGTTCTCAAGAAAGATGTTCCAGAAGATGTCCAGAATGATAGATGTCTTGATGGGGCTGACATGAAACTCCTTATGCCCTCCCCTTGTGACCAAGATCCTATGATCCCCAGCACAGAGGCATCCACACAGATGGAGCTCTATGCCAATGGTCATGCAAATCTTGTCAAACAGAAGAATCAGGGCGAGTGTGATGAAGAGAGCTGCCTGCAAGTGTTTGACTGGATTTGTTGTCACAAAGAGAAAACATCAGTGGTTGAACCCAAAGTGGTTGGAGAAGATGAAGAAACTGTTTGTGAAATGCTTTATGAACCTCCTAAGATCAAGCTCTTACTTAACTTAGGCCTGGTATTCGTCTGTTCACTGGgtgttttcatgtttgtgtACTTCTCCTTATAATATGCTGTGTGAAAGACAGAACATTTATATGaactatttgttattattagccATATAGAGTCTGTAatatttacagtgtgttttatttttcttttaagaacttCCTTTTAGGGACTTCATACTGAtagatgttatttattcctttatctTGGTTTTGTCACACCTCGAAATATTCAGCTGTTCTTTATGGTATGTTGACAACCAAATTCATTACTGAAACTGTAGCTTTTTTATACTTGGTTGAACTAAGGTAATGTAGgatgtactattttttttttcttccttggtGAATTTTACCTTAATGTCTGCACTCCTCCAAACTGAAACAAAGTAAATTTTTTCATATAGTAGTACGTAAATGTGTAAGGGGGTTGTCTTTTGCATATGCACACTCTTGGGAATATCAGATTTCTAAAACTTGACTTCGCTTGTAAATTTGTCACCTGTGTAACTGGAATAGTGTTTccaaggtttttatttaaatggataTCACTGACTAGTTGTGCTGTCTGAGTAAACCTAATTTACATTCCCAAATACAAAACGAGCATTTAgatctgttcatttaaattgtaactgTGATTGTATATATAATTGGCTGTATTTTCTGTGCTTTCATGATTTTGTATTTAGTAACAccaaaatgcctttttttgcAGAGCTGTGAAGACATtgctttttgttaatataacatttaatgtgaaggagaaaaaaaaaaaaaaaaagaattccaAAACGTTATTGCTACAAAGCAATTCAGCTATAGAATGCACAGACCGGTTATATGGATGTTACTAAATGGCAGTTTGAACCGCCACAGGAAAGACTGTGTGGGAAAACTGTCATTAATGTGTTAATTCCTCACATTTATTTAGCACTTTTCAAAGCACTTAAAGTGCTTTACATTGTTGGGGGGGGTGTCTCCTCATCCACCTGGATGATGTGACTGTTCCAAAATGCCCACCACACACCAGCTTATTGGTGGAGAGGAGTCAGAGTGATGAAGTCAATGAGTAGATGTGGGGATTGTTAGGGGGCCCGTGATGGTCAAAAGCCAAATTTGACCAAGATGGTGAGGTCACACCTCTACTCTACTCTTTTCGAAAGACATCCTGGGATTTAAAGTTGCATCCAAAGGACGGTGCTTTTTACAGTATAGCGTACCTGTCACTGTACTGGGGAGTTAGGACCCACAAAGACCACAGGGTGAGCACAGCTTCTCTAACACCTTTTACACTAGCAACCTGGTTTTCCCAGAAGGTCTCTCATCCAGGTACTGACCAGGCTCAACCCTGCTAAGCTTCAGTAGGTAACCAGTTTTGGGCTGCAGGATGACATGGCTGCCAGCCATataataactgatttaatgatgtCCCAAAACATTAAGACTGGGATGTCCAATTTTGATTGCTGCGCAAAATAGTATCTTGTTCTTCTAGAAGAAGAATTTGATTGTAGCTGCAGTAACAGGCATTGCCTGTTGTTGATCTGCTGTTGAATGCACTATTTGTTCAGAGAAAGGGGAACTGCTGAATGGCCTTAGTGAAACTGAGATGGGCGTGAGGGGTTTTCTAGACAGatgtaacttatttttttaagtaaagttTCACAATGTTGTATTAATACCTTGAAAAGACCTTAAAcgtaatgacattttaattcagaagTTATGTTAAGAGTTATCATtccaaataaaattaagttgggatatcactgaagaaaaaacattttacattataaaataaatagttgaaAATCACTCTATATGTTTAAATCCCTTTTGTACAGATAATCTCTTTGTAAAAGAGGTacattaataaagaaacattcattAGACATTTgttgctttatatttattttcccccAAATGAACCTTTTGGTTTTCTGACTCTTGTCCTTGTGAATGTTACTGAAGtgattgcctttttttttttttttttttgcagctatCAACTCATCTTAtacttatttgaaaattaattcTCAATctcagaggggaaaaaaaaaaccacatgaAATTTACAAAGGTTGCGAACTGTTGTGATTATCCGAGGCCTAACTGATCAAATTGTTCTTGTCATCTAAACctgacatgaaaaataaattatcaaaAGACTTATGCTCCAAAAGAACATCCTTTTAGCACACATTAGACAATTTTCAGGCAATGCCATACTACTACTTGCTTAGGGGTGTGAAATGTGGTTTTGGTTTTGGATACTCCACAGATTTTCAAACCaaccttttaatatttatccATTCATTTAGTAGTGAAATTATGGGgttctgtctttttttaaaggcacttatatcttgtttgttttgtgtttgataaTGTGAATTGTTTTTGACTGTTACATTATTTCATTCAACATCACTCTCTGAAGTACTTATTTTAACATGGACTTTCATAACaacaaaaaggttttgtgtttatttggtttcaGTAGCTaaagttttgtttgcattgAATCATTTGTCATTGAATGGTGTATGGATTTCAAATTTTTCTGATGTGTGATTTAGAGTTTCTATATTTCTTATGTTGTCGCGTGTTGCCAGAAACTAGCTTTATCAATTCATTATGATGAGTTCCATGAGCTAAAAAGATGGAGTTTGTTACTTTCAATCTCTGATTTCATGAGAAATGCACTAATGATTTGTACATTtgctacttttattattaaaagttgcaaatgaataaaaagacattCATTTGAGAAGGACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251840.1 lncRNA downstream 152783 15948113 ~ 15953976 (-) True LOC122352066
TU104518 lncRNA downstream 344090 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 462483 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 468323 15628883 ~ 15638436 (-) True LOC122351574
TU104406 lncRNA downstream 685182 15418999 ~ 15421577 (-) True G70581
TU104861 lncRNA upstream 2018 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 489103 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 489103 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 494006 16610270 ~ 16610561 (-) True G70955
TU104935 lncRNA upstream 496853 16613117 ~ 16613424 (-) True G70956
XM_043248160.1 mRNA downstream 9693 16092730 ~ 16097066 (-) True casq2
XM_043248162.1 mRNA downstream 9699 16092730 ~ 16097060 (-) False casq2
XM_043248589.1 mRNA downstream 81826 16006180 ~ 16024933 (-) True fhip1b
XM_043248590.1 mRNA downstream 100715 15998141 ~ 16006044 (-) True LOC122351503
XM_043249419.1 mRNA downstream 128458 15974565 ~ 15978301 (-) True hpxa
XM_043249664.1 mRNA upstream 65490 16181754 ~ 16183111 (-) True rpl8
XM_043249460.1 mRNA upstream 87709 16203973 ~ 16300457 (-) False LOC122351999
XM_043249459.1 mRNA upstream 87709 16203973 ~ 16300457 (-) False LOC122351999
XM_043249458.1 mRNA upstream 87709 16203973 ~ 16300457 (-) False LOC122351999
XM_043249456.1 mRNA upstream 87709 16203973 ~ 16300457 (-) False LOC122351999
TU104521 other downstream 334895 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 707322 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 800784 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1852983 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 2166891 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 700876 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 700876 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1119608 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2453491 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3604234 19720498 ~ 19721737 (-) False ankar

Expression Profile