RNA id: XM_043248631.1


Basic Information

Item Value
RNA id XM_043248631.1
length 2679
RNA type mRNA
GC content 0.46
exon number 15
gene id uxs1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6842578 ~ 6880028 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCACATAAAAACACACCGATAAACCGTGTGCCtttttacattcatacatacCAGCAATTTCAATATAGAAATGCTCACACGAGCTCGTCGGGCGGTTTGCATctatttgaaaagaaaacaaaagagctTTACTTTCTTGCTATCGCGGCAGGATGCTTAATCGATAACAGAAAACATCGCTTATGTTATCTTGCTACGACTAACGTTATCTGATGCGGAGCTGCTTTATTGCTCTGTCGCGGAACTCTTGATTAATGGCATCGGATCATCCGTAAACCTCGATCATTGGATAAGTCACAGGATAAGTCCGAGGATTTGAACAGACTTCCGTGATATTGCGCCATATTACATTAGTTTGTTAGTTAGCACCTCTAGCTGCAGCTCTACAGTCATGACGCTACATGGCTAACTGACCATAATGCCAAACCAAAATGCCGTTTTACTTTCTTTAAACGGGAACCTGGATGCACCAGGACGCTCGCCGAACACAAACACGCCGGGCTGCCTAAACCGTCAGACATTGTTTTGACGCAGAAATCGTTTTGAGAAGAAGTTAGCCTGGTTAGCTTCGGGCAGGCGCTCGCGCTCTTACTTCGCACACGGCAACAACTTTTGTGTTTCAGCTTATAATTGAGTTTCCGTGTGTGTTTGGATACCGGTGCCGTGTTCTGTCGGTAAGGAGCGGGCTCGTGTGAGCGTGTGATAGACGCTGAAGAGAGATGCAGCGGTGGTGAGGAAGAGCTCAATGCCGTGTGTGCTGGAGGATGATGCGGATGAGCTGGATGATCACAGTCATTAACAGAAGAATGATGAAGATCCTGATCGCCCTCGCTCTCGTTGCCTACATCGCCTctgTCTGGGGAACCTACGCAAATATGAGGTCTATACAGGAACACGGAGAAATGAAGGTTGAGCAGAGGATAGATGAGGCTGTGGCACCTCTCAGGGAGAAGATACGAGAACTTGAGCTTagttttacccAGAAGTACCCACCTGTGAAATTCTTATCTGAGAAGGACCGAAAGAGGATTTTGATCACTGGTGGGGCAGGATTCGTGGGCTCGCACCTCACTGATAAGCTTATGATGGATGGTCACGAAGTGACGGTGGTGGATAATTTCTTCACTGGCCGCAAGCGCAATGTAGAGCACTGGATTGGCCATGAAAACTTCGAGCTGATCAACCATGATGTAGTGGAGCCTCTTTATATCGAAGTTGACCAGATATACCATTTGGCTTCGCCTGCATCGCCACCCAACTACATGTATAACCCCATCAAGACACTGAAAACTAATACTATTGGTACTCTCAACATGTTGGGATTGGCCAAGCGAGTCGGAGCTCGTTTGCTCCTCGCCTCCACTTCAGAAGTGTATGGAGACCCAGAGGTGCACCCCCAGAATGAGGACTACTGGGGTCATGTGAACCCTATTGGCCCCCGGGCCTGTTATGATGAAGGGAAACGTGTTGCGGAGACAATGTGTTACGCCTACATGAAACAGGAAGGAGTAGAGGTGAGAGTGGCTCGGATCTTCAACACCTTCGGCTCTCGCATGCACATGAATGATGGGAGAGTGGTCAGCAATTTCATTCTGCAGGCTTTACAAGGAGAGCCGCTGACGGTTTATGGTTCAGGTTCTCAGACGAGAGCTTTCCAGTATGTGAGTGATCTGGTGAATGGGCTGGTGTCCCTGATGAACAGTAACATCAGTAGTCCGGTTAACCTGGGCAATCCAGAGGAACACACTATACTAGAGTTTGCACAGCTTATTAAGAGTCTAGTTGTGAGCCGCAGTCATATTCAGTTCCTTCCAGAAGCACAGGATGATCCACAGAGAAGACGGCCAGACATCCGCAAAGCCAAAATGCTTCTGGGCTGGGAACCTGTGgTGCCACTGGAGGAAGGCTTGAACAAAACCATCCAGTACTTCAGCAGAGAGCTGGAGCATCAGGCCAACAATCAGTATATACCCAAACCCAAAGCTGCACGGATGAAAAAAGGAAGACCCAGACACAACTGATGAATTGTGTGTTGATCTCAGGGATGCTGGGATACTGAAGGACCTTAGACGTCCAGCAGCCGTTTTACAGCGTGGGTTTCCCACCTCCCACTTTCAGATCCATCTTTTTGAGAaattttctgatgtttttcgcaaatgttttgaaaagcGGCTCAGGCAGAGAGCTGTCTCTAAAgagtttgtttttcagtcaAATGTGCCTCAAAGATATCCAATTTACAGACTTTGCCTTGCACTTTGGTTCGTCGGTCGTCTGTCTGTTATTTAAAGCAAGCTTAGATCttcatgtgcatttttttttgttgtgtgtttacATCCTGTGCCGTTTTAATTGATGTGATCTATTTTTTTATCGTCGTCAAAGCTAGCGGTGTGTTATTGCTCAACGGACACCTGTAGAAAATTATGGCAATTAACAGTTGCAAACTATTTAAAGAGCTCAAATGTCCGGTCTGGAGCAGGAAACCTCATCCAGCTCCGTCGAGAAATCTGGGGACGCAGATGAAAGAAAAGCTTTGGAAAATGTTCTTTCTGCTTTAAACTTTGTGATGATTTTGAGCAAAATCTGTTGTTACCTTTGTGAAACTTCATACAGAACTTTGAACCTATAATTGATTTCAggtgaaaataatattttaataaaatatttactgtga

Function

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0051216 cartilage development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0033320 UDP-D-xylose biosynthetic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0048040 UDP-glucuronate decarboxylase activity molecular_function

KEGG:

id description
K08678 UXS1, uxs; UDP-glucuronate decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100960 lncRNA upstream 134385 6707841 ~ 6708193 (+) True G68254
TU100958 lncRNA upstream 147667 6694678 ~ 6694911 (+) True G68252
TU100957 lncRNA upstream 150738 6691342 ~ 6691840 (+) True G68251
TU100954 lncRNA upstream 158082 6682624 ~ 6684496 (+) True G68248
TU100953 lncRNA upstream 168928 6673105 ~ 6673650 (+) True G68247
TU101009 lncRNA downstream 27710 6907738 ~ 6943321 (+) True G68296
TU101019 lncRNA downstream 83127 6963155 ~ 6974701 (+) True G68304
TU101024 lncRNA downstream 111805 6991833 ~ 6995856 (+) True G68309
TU101167 lncRNA downstream 319241 7199269 ~ 7199817 (+) True G68405
TU101162 lncRNA downstream 376652 7256680 ~ 7259394 (+) True G68401
XM_043248733.1 mRNA upstream 29556 6763869 ~ 6813022 (+) True st6gal2a
XM_043248736.1 mRNA upstream 29556 6774481 ~ 6813022 (+) False st6gal2a
XM_043248735.1 mRNA upstream 29556 6782931 ~ 6813022 (+) False st6gal2a
XM_043249763.1 mRNA upstream 124781 6710206 ~ 6717797 (+) True pdzk1
XM_043248303.1 mRNA upstream 581489 6246813 ~ 6261089 (+) True irs2b
XM_043249412.1 mRNA downstream 76493 6956521 ~ 6964046 (+) False fhl2a
XM_043249413.1 mRNA downstream 77969 6957997 ~ 6964046 (+) True fhl2a
XM_043249411.1 mRNA downstream 77972 6958000 ~ 6964046 (+) False fhl2a
XM_043248363.1 mRNA downstream 220401 7100429 ~ 7106362 (+) True mfsd9
XM_043248355.1 mRNA downstream 237518 7117546 ~ 7142648 (+) True inpp4aa
TU100736 other upstream 877698 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 956825 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1385049 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1385315 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1385735 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 1461270 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1551117 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1984621 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 2262564 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 2262564 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile