RNA id: XM_043248643.1


Basic Information

Item Value
RNA id XM_043248643.1
length 2275
RNA type mRNA
GC content 0.50
exon number 13
gene id cerkl
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22171463 ~ 22223667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGCCCAGCGGGCGCGCGCGCTTTAGAGGTGCATGGAGACGAGGAACTTCCTCAAGAGCCTAGCGACCGAGAGTTGGTAAATTAATACACGAGGGCGAGTTTACCCCGCAAGCTTTGACATTATGTTCGAATCCCCGTGTAAATCGATAAACGTCCTCGACGCGTGGTCGGAGAGCCAGGAAGAGTTGCGCGAGACGCAACCGGTGTCTCCTCGCGGGACGAGAAAGCGAGTCAAGGCGAAAAAGAAAAAGCGAAAACAGCAGCAGGACGAGAAACGCTCCGTCTCGGCCCCTCAGCTGTGCACGGACGACGCCGATAAGGGCCGAGCAGAAAAGAAACACAGACCGGACGAACCGATCGTGAGAGGAATTTTTCAAATCGGGAAGAAGAGCCACGACGTGGTTCTCACGGAAACGCGGGTAACATGGACGCCCATTCAGCCCGAGACCCCTACAGCTGACCGTGATGTGAAGAAGCAGGAAGAGTATGTTGAGCTTAAGGACGTGTTTGCTGTGAAGGTAAAGCGGCGGCGCTCTGCGGGGCAGCAGACGGGTGGAACTCTGCTGGGCATCACACTCTTCCAGTGCAAGAAGAAAGGGCTCAAACTCAAGGAACATGCCATCCACCTCAACAACCTCAGCGCAGACCACTGTGAGATTTGGTTCAAGAACCTCAAAGAGATCCTCCGTGGTTTTAAGAACCGTCCCAAGTGTCTCAAAGTCTTCGTGAACCCCATCAGCCACAAGAAAGAGGCTTACCAGCTCTACCTGGACGAAGTTGCCCCGCTCTTCAAGCTGGCTGACATAGAAGCCGATGTGACCATCACCAAGAGAAAGGGCCATGCACTGTCCATTCTGAAAGACTGCAGCTTGGAAGACTACGACGGTGTGGTATGTGTTGGGGGAGATGGCTCTGTAGCTGAGGTGGCCCACGGGTTGCTTCTCCGGGCCCAGATGGACGCTGGGAGGGACACAGATTCCATCTTCACGCCTGTCCAAGCAGCACTTCCTCTCGGCATAATACCAGCAGGTTCTACTGATGTGGTGGCCTGCTCCGTGTATGGAATAAGACGCGCCGTGACTGCAGCCTTGCACATCATCATGGGTCATCATCAGCCCGTGGACGTGTGTAGCTTTAGCTCTATGGGTCGCCTTCTGAGGTTCGGCTTCTCTGCCATGTTTGGTTTCGGTGGGCGGACGCTCGCACTGGCAGAGAGACACCGCTGGATGCCACCCAGCCAGCGCCGAGAGTTCGCTCTCATTAAAACACTGGCAAACCTCAAACCTGAAGAGTGCGAACTGTCCTTTGTAACCAGCAGAGGAGCCGAGGATCAGACAAAAGCTGAGCGAAATGGAGATGGAGGAATTTGTGTGGATGGATCCTGGCAGACCAGACAAGGCCTTTTCCTGAATGTCAGCATCATGGCTATTCCCTGTCTGTGCTCAATGGCCCCCAGGGGCCTGGCCCCAAACACCAGGTTAAGCAACGGCAGTATGGCGCTGATAGCTGTCGGAAACACCTCCAGGTCAGAGTTCATCAAGCACTTGAAGAGATACAGCAGCACAAACAACCAGTTTGGATTCTCGTTTATCGAGACGCACGCCGTGAAAACTGTGAAACTGCGGCCACGCTCTCAGGGAAGCTGGGCTGACGACGTCTCAGAGGAGAACGAGGAGTGCGATTCAAAAACTGTGCCCATCATCTCCTCTGAAGGAACGTACCCCTGGAACATTGACGGAGATCTCTTGGAGGTCCCATCTGAACTGCTAATAAgAGTTCACCCGCAGCTCCTCACACTCTTTGGAACAGACACGGAGGAGGCGGAGGAGGCGCCGGTTAAATGCAGCTgtatctgaacacacacaaccACATTAAAGAGAGGCTGTGCTAGATAGTAGATCTACGAGAAACTGAAAGAACAAACCACACAGAGCAAagctttaacatttttacacaacATTTTATGATGAAGCACAAACATGTGACACATAGTAGATTCCAGTGCATAAAAGCTTAAATTAAAccaatgtaattgtttttttgttttgttttgttgggttttttttacaaaaatttgtagcatttttaaagacaggcaataaaataaaaacattaacttattcaaaatactgataaaaaaaaaactaacaaaaaaacccaatgtCCTTTTTTGTGCACTATTCCCTGAACTGTAGACTTGtttttccttgttttctttactctttgtaaattttatataaaaagcactGACAAGCAACCCATCCGAAAgataaa

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0042461 photoreceptor cell development biological_process
GO:0010842 retina layer formation biological_process
GO:0005829 cytosol cellular_component
GO:0005730 nucleolus cellular_component
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG:

id description
K19602 CERKL; ceramide kinase-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107268 lncRNA downstream 48055 22123190 ~ 22123408 (-) True G72500
TU107261 lncRNA downstream 71225 22100026 ~ 22100238 (-) True G72493
TU107239 lncRNA downstream 114628 22054014 ~ 22056835 (-) True G72472
TU107240 lncRNA downstream 116432 21995935 ~ 22055031 (-) False G72472
TU107238 lncRNA downstream 116432 22031137 ~ 22055031 (-) False G72472
TU107272 lncRNA upstream 63108 22286774 ~ 22295068 (-) True G72502
TU107317 lncRNA upstream 73341 22297007 ~ 22445495 (-) False LOC122351746
TU107333 lncRNA upstream 73384 22297050 ~ 22445495 (-) False LOC122351746
TU107340 lncRNA upstream 83516 22307182 ~ 22310478 (-) True G72537
TU107338 lncRNA upstream 87412 22311078 ~ 22458758 (-) True G72535
XM_043249016.1 mRNA downstream 263750 21897185 ~ 21907713 (-) True LOC122351744
XM_043248710.1 mRNA downstream 275416 21744043 ~ 21896047 (-) True LOC122351560
XM_043249014.1 mRNA downstream 1000688 21168939 ~ 21170775 (-) True LOC122351741
XM_043249011.1 mRNA downstream 1400310 20769745 ~ 20771153 (-) True LOC122351738
XM_043249010.1 mRNA downstream 1410436 20760046 ~ 20761027 (-) True LOC122351733
XM_043248644.1 mRNA upstream 1892 22225558 ~ 22228499 (-) True neurod1
XM_043249520.1 mRNA upstream 117742 22341408 ~ 22398653 (-) True LOC122352034
XM_043249018.1 mRNA upstream 222727 22446393 ~ 22510524 (-) True LOC122351746
XM_043249180.1 mRNA upstream 258560 22482226 ~ 22484709 (-) True LOC122351832
XM_043249423.1 mRNA upstream 314309 22537975 ~ 22541710 (-) True dusp19a
TU107092 other downstream 444643 21709288 ~ 21726820 (-) True G72363
TU106614 other downstream 1667573 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 1667573 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 2278148 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 2366864 19796257 ~ 19804599 (-) False glsb
TU107316 other upstream 75506 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 235730 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 1706541 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1732553 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1996856 24220522 ~ 24280708 (-) False G72978

Expression Profile