RNA id: XM_043248644.1


Basic Information

Item Value
RNA id XM_043248644.1
length 2207
RNA type mRNA
GC content 0.49
exon number 2
gene id neurod1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22225558 ~ 22228499 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGACATCCGCTCGCATCTCCCAGCATCAGCAGCACCGCTATATAACCAGAGCATCCCATCGGCGCAGCCACATTAGGCTTCAATCCGCAGGACTTCCCACACGACACCACGAGGGGCATGAAACTATCATAACGAGACATTCAACAAATCCCAGAGTTCCAACATGACGAAATCTTACACCGAGGAAAGCATGATGCTGGATTCTCAAACCAGCACGAACTGGACCGACAAGTGTCACAGCAGCTCCCAAGACGAGCGAGACCTGGAGAACTCCAGCGTGCCCATGCACAAGGATATGGAAGACGACGAGGTGGGACTCAACCGACTCGAAGACGAGGacgatgaggaggaggaggaggaggaagaggacggCGATGACACCAAGCCGAAAAGACGGGGacccaagaagaagaagatgaccAAGGCGCGTCTGCAGAGGTTCAAGATGAGGCGCATGAAGGCGAACGCCCGGGAGAGGAACCGCATGCACGGCCTCAACGACGCGCTCGAGAGCCTGCGCAAAGTTGTGCCGTGCTACTCCAAAACGCAGAAGCTCTCCAAGATCGAAACGCTCCGACTGGCCAAGAACTACATTTGGGCTCTTTCGGAGATCCTGAGGTCGGGCAAGAGCCCGGATCTGATGTCTTTCGTGCAGGCCCTGTGCAAGGGCTTGTCCCAGCCCACGACCAACTTGGTCGCGGGCTGCCTCCAGCTGAACCCCAGAACTTTTCTCCCCGAGCAGAGCCAGGAGATGCCCCCTCATATGCAAACAGCAAGTGCTTCCTTTTCCGCGCTTCCCTACTCCTACCAGACGCCCGGTCTTCCCAGCCCTCCGTACGGTACGATGGACAGCTCTCACATCTTTCACGTCAAGCCGCACGCTTACGGGAGCGCGCTGGAGCCGTTCTTTGAcaccgcgctcacagactgcaCCAGCCCCTCGTTTGACGGACCGCTTAGCCCGCCTTTGAGCGTCAACGGGAACTTTTCCTTCAAACACGAGCCTTCGTCGGAATTCGAGAAGAACTACGCCTTTACCATGCACTATCAGGCGGCGGGCTTGGCCGGCGCGCAGGGACACGCGTCTCTTTACGCGGGCTCCGCGCAGCGCTGTGATATACCCATGGAGAACATTATGTCGTACGAAGGGCACTCGCATCACGAGCGGGTCATGAACGCCCAGCTCAACGCGATATTTCACGACTCGTGATTCTAACGGACATTTGCGAGACTGCTCGACGCGGTATTCTGTTATGGCTGATGCAAAAAGAGCAACAACATTATATGCTTAATCTTATGTACGTATTTATTGTTGTTACTGCCTTTAGGAGAAGAGAGGATTCGTTGGTTCTCGTTCACCTTATGTATTGTATTCTATAGCGCTTCTACGTCGCGGTCACACACAGGTGGGAACAGGCGTGACCTTCTTCAGAATGTGTTAATTATCCATGCTACAAAATCACAAGCAATAATTTGGAATCTATGCAATTTTTAATCCAATACTGGGCcaattatagaaattaatagAGATCGATATATTTTTCAACCTATTACATTTTACTACTTATCTATCCCATACTGAATTATTTTGTTGTGGTTTTGTATagaattgttaatttttataaagTCGGATCCCTTGCGTCATTCCATGCAACCCctcatgttaatgttttataaaactgATTTATCTCTTGTTTATACAGAACAGTACTCAATCTAGTAATAACCAGCAGGCAAGTGCTTAAAAATCTGTAATGTTGCCTTAGCAATGAATTACTGTAAAATCATGCAGAGTTGCACAATTCCCATCCTCCGAATCCCGTCTAACGTTACGTTCAATCAGTGATCCTTTGCGGAAATGCGAATTGCTTGAGTGCTATGTGTgtggggtggggtgggggggACAAAAAATTCGGTGTTAGAGTCTCAGTGTTGTACATAAAAGCTTGACTATCACCTTTTAAATTCACCCTGCGTAAAAGCCGATGGAGAGGCCCGTCTCTCTAAGACGGAGAATAAGTCACGGACTGAATTAGTCTGCTCTAACCAATTTGGGTATTTTCGAATTGGTCGCGAAGAAGGGACGAACAATGAAGGTACAACCAAAAAGGTTGATTTTAAAGTGATTCTAGTTTTGAGActgttgtatgtgtgtatcgGTTCATGATGGAggtttaagaaataaaacaaacggtTTTGAATTGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048923 posterior lateral line neuromast hair cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K08033 NEUROD1; neurogenic differentiation factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107268 lncRNA downstream 102150 22123190 ~ 22123408 (-) True G72500
TU107261 lncRNA downstream 125320 22100026 ~ 22100238 (-) True G72493
TU107239 lncRNA downstream 168723 22054014 ~ 22056835 (-) True G72472
TU107240 lncRNA downstream 170527 21995935 ~ 22055031 (-) False G72472
TU107272 lncRNA upstream 58275 22286774 ~ 22295068 (-) True G72502
TU107317 lncRNA upstream 68508 22297007 ~ 22445495 (-) False LOC122351746
TU107333 lncRNA upstream 68551 22297050 ~ 22445495 (-) False LOC122351746
TU107340 lncRNA upstream 78683 22307182 ~ 22310478 (-) True G72537
TU107338 lncRNA upstream 82579 22311078 ~ 22458758 (-) True G72535
XM_043248643.1 mRNA downstream 1892 22171463 ~ 22223666 (-) True cerkl
XM_043249016.1 mRNA downstream 317845 21897185 ~ 21907713 (-) True LOC122351744
XM_043248710.1 mRNA downstream 329511 21744043 ~ 21896047 (-) True LOC122351560
XM_043249014.1 mRNA downstream 1054783 21168939 ~ 21170775 (-) True LOC122351741
XM_043249011.1 mRNA downstream 1454405 20769745 ~ 20771153 (-) True LOC122351738
XM_043249520.1 mRNA upstream 112909 22341408 ~ 22398653 (-) True LOC122352034
XM_043249018.1 mRNA upstream 217894 22446393 ~ 22510524 (-) True LOC122351746
XM_043249180.1 mRNA upstream 253727 22482226 ~ 22484709 (-) True LOC122351832
XM_043249423.1 mRNA upstream 309476 22537975 ~ 22541710 (-) True dusp19a
XM_043249029.1 mRNA upstream 369329 22597828 ~ 22610069 (-) True dnajc10
XR_006251764.1 other downstream 1891 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 498738 21709288 ~ 21726820 (-) True G72363
TU106614 other downstream 1721668 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 1721668 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 2332243 19881824 ~ 19893315 (-) False mfsd6b
TU107316 other upstream 70673 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 230897 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 1701708 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1727720 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1992023 24220522 ~ 24280708 (-) False G72978

Expression Profile