RNA id: XM_043248670.1


Basic Information

Item Value
RNA id XM_043248670.1
length 5127
RNA type mRNA
GC content 0.53
exon number 54
gene id col5a2a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20694560 ~ 20718541 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTAAAAAAGAGGCAGCAGAGAGTGGGGCTGGGTCTGATTGCTGCTCTGAGCAGGAAAAACCTCAGTCTGTCTTCATGGTGAAGCGATAACCTGGActcttttttcccttctcttcCCGGTTACTTTGCCCGCAAGAACAGCTCATGTCTTTGATATGGGCATAATGATATTTCAGCCTTATAGGACTGTCCTGTTTCTGGCTTTATCTGTGgcttttttacagtttgtgaAATGCCAAGACGAAAGTGATGATGAGCTGAGCTGTACAGAGAACGGACAGGTGTACACAAACAGAGACATCTGGAAACCTGAACCATGCAGGATCTGTGTTTGTGACAGCGGGACCATCTTGTGCGATGAGGTGCAATGTGATGAAGTGTCTAACTGTGCAAAGGTAGTAATCCCAGAAGGAGAGTGCTGTCCTATTTGCCAGAGTGACACAACACACAACAGTGGCAATGGCAGACCAGcAGGCAGAATTGCCAAGGGCCAGAAAGGAGAACCTGGAGATGTCCCAATTGTTACTGGAATAAGAGGTCGCCCTGGACCAATGGGACCTCCAGGAGCTCCAGGGTACAGAGGAGACAGTGGACCCAAAGGCAGACCTGGTCTCAGGGGTCCTCCAGGATATGATGGAGAGCCTGGTGTTCCAGGACAGCCAGGAGAGCCAGGCCCCCCAGGACATACCCCAGGAGGTGAGTTGTCTTCACATATGGCTGGAGGATTTGCTGATAAAACAGGAGCCCAGCATGCCATGATGCCTGGAGTTCGAGGAGAGGCAGGAACAAGGGGGCCGCCTGGGCCAAATGGAGCACCAGGGGCGTCAGGACCACAAGGACCTCCTGGTGATGTAGGAGATCCGGGGCCAATGGGTGGTGCTGGTCAGAGAGGACCAGAGGGTCCTCCGGGGAAGCCTGGTGAAGATGGAGAATCAGGGACTTCAGGAAGCTCAGGAGAAATGGGATTTCCAGGATCTGCGGGAGCAAGAGGATTTCCAGGGACACCAGGGCCACCAGGCTTAAAGGGCCACAGAGGTCACCAAGGTCCAGCTGGTCTTAAAGGAGAACGTGGAGCTTTGGGATCAAAGggTGAATCTGGTGGATCTGGTGCAATGGGTGCCCCTGGTCCTATGGGTCCCAGAGGAATGCCAGGAGAAAGAGGACGCCCAGGCCCTAGTGGCACAACGggTATGCGTGGTGCTCAAGGAAATGTTGGAAAACCAGGTCCAATGGGTCCTTTGGGAATTAATGGTGCCCCGGGATATCCTGGAAGTCCAggcatgaagGGTCAACCAGGACCTACAGGTGTGAGGGGTCCAGAGGGACCACAGGGACAAAGAGGAGAGACAGGACATCAAGGGAGAATTGGACCACAAGGACAGCAAGGACCTATGGGCACTGACGGTGGTCCAGGTTCCAAAGGCCCAGTGggaGCTGCTGGTCCTCAGGGTCCTGTTGGTCTGCTGGGACCAACTGGCCCACCAGGACCTCAAGGAAGCACTGGACAGCCTGGGATCAAAGGTCAATTGGGAGATATAGGTGTTGCTGGATTTAAAGGAGAGGCTGGACCTAAAGGAGAACCTGGTCCACCAGGATCGCAGGGAGTAATTGGACCTCAGGGAGAAGAGGGAAAACGCGGGTCCAGAGGAGATCCAGGTTCTGTTGGCCCACTTGGACCTGTTGGTGAGAGAGGGACACCTGGAAACCGAGGCTTCCCAGGTCAAGATGGTTTACCAGGTCCAAAGGGTGCACAAGGTGACCGTGGAATTACAGGAACGTCTGGTCCTAAAGGCTCAACAGGAGATCCAGGGAGAACAGGGGAACCAGGTCTACCAGGCGCAAGGGGTTTGACAGGTACACCTGGAGTTCAGGGTGCTGAAGGAAAACCAGGACCACTGGGTGCTCCAGGTGAGGACGGACGCCCAGGGCCTGCAGGGTCAACTGGTACAAAAGGCCCTCCTGGAACCATGGGATCAATAGGCCCAAAGGGTTTTAGTgGGGATCCAGGAAAGGCAGGTGAGCAAGGATCAGCAGGAGTTCCAGGGCAAAGGGGCCCACCAGGCAAAGATGGAGAAGTAGGCCCAGCTGGTCCACCAGGTCCACATGGTGCAGCAGGTGACCGAGGTGAACAGGGACCTCCTGGCATGCATGGCTTCCAGGGTTTGCCGGGACCAGCAGGTGCTCCAGGAGAGGCAGGAAAACCTGGTGATCAGGGTATTCACGGAGAAGGTGGCCCAATAGGCCAAACTGGTCCAAGGGGTGAACGTGGAATTCCAGGAGAAAGAGGAGAGCTGGGACCTCATGGCTTGCCTGGAGAGAAAGGAATCCCAGGAGCACCTGGTCCTGATGGCCCAAAGGGTAGCCCTGGACCTCCTGGTACGGTAGGCGATCTAGGCCCTCCCGGTCTGCAGGGAATGCCAGGTGAAAGAGGGATCTCTGGCCCACCTGGTCCaaaaggagagagaGGAGCTATTGGTGAGAAGGGGTCAGAGGGCACTCCTGGAAGTGATGGTGCAAggGGATTAACAGGCCCAATTGGTCCTGCAGGACCCTCAGGTCCAAGTGGTGAAAAGGGAGAACCAGGTCCTAAAGGACCACCTGGACCTCCCGGATCAAGAGCAATGCCAGGATCCCGTGGTGAACCTGGGCCAATAGGTGCTGTAGGTTTTGTTGGACCGGCTGGTATTGATGGTCAGCCTGGTGTGAAAGGACCACCAGGAGAGCCTGGACAAAAGGGTGATGCTGGATCTCCTGGCCCTCAAGGGTTGGCTGGTCCTCCAGGGCCACAGGGTAATATTGGTGTGGCTGGGCCAAAGGGTGGTAGAGGAACACAGGGGGCACCAGGCCCAACAGGTTTCCCTGGATCTCCTGGAAGAGTTGGCCCACCTGGTCCAACGGGTCCAATTGGTGAGCCAGGTCCAATTGGTCTTCCTGGGAAAGAGGGTCCTCCTGGTCTTCGAGGAGACCATGGACCACCAGGGCGTCAGGGAGAGAGAGGTCCTCCTGGGCCTGCTGGAAGTCCTGGAGACAAAGGAGATTCTGGAGAAGATGGGCCATCAGGACCTGATGGCCCACCAGGTCCTGCTGGAACCACAGGGCAAAGAGGAATTGTAGGTCTTCCTGGTCAAAGAGGAGAACGTGGAATGCCGGGACTTCCTGGGCCAGCTGGTCCTCCAGGAAAACAAGGTACATCAGGAGCCCCAGGAGACAAAGGGCCTCCTGGCCCAGTTGGGATGCCTGGTGCTAATGGACCTCGGGGGGATCCTGGACctgatGGACCTGCTGGATCTGATGGTCCACCAGGAAAGGAAGGTGTCATAGGAGCCCAGggtGATCGAGGAGATCCAGGCCCAGAGGGTGCGGCTGGATCTACAGGACCACCTGGTTCTCCCGGTCCTGTCGGTGCAACTGGAGGAATTGGAAAGAGAGGAGAGCCTGGTTCAAAAGGACCCTCTGGCCCTCCAGGTCCTGCTGGAAAACGAGGACTCATAGGACCACAAGGACCAAGAGGAGATAAGGGAGATGTGGGTGACCATGGAGAGAGAGGTCAAAAGGGTCATAGAGGATTTGCAGGCTTACAAGGTCTTCCTGGACCACCTGGCACAACTGGAGAACAGGGGGCTCCAGGCATTGTTGGTCCAAGTGGACAAAGGGGACCTCTTGGGCCCACTGGGCCACCAGGAAAGGAAGGGTACATTGGACAGCCTGGACCTATGGGTCCTCCTGGTTCAAGAGGAGTTAGTGGCGATATTGGACCAGAGGGACCTCCTGGAGAACCTGGCCCACCTGGCCCTCCCGGATCTCCTGGACCTCCCAGTGCAGCTTCTGAAGATCTGTTTGGTGGTCCTCAAGATTATGATGTTGGTCCTTCGCTCCCAGAAGTCAATGAGGATGAGGCTCTTCCCAAGAGTAACTCAACAAGCATGTTCCAGGCTGATCCTGGAGTTCAAGCAACTTTGAAAGCTCTGAGCAGCCAGATTGATAGCATGCGTAGCCCTGATGGTAGTAGAAAGCATCCTGCCAGAACTTGTGAGGACTTAAAACAATGCTACCCTCAAAAAAAGAGTGGTGAATACTGGGTGGATCCAAACCAGGGCAGTGCAGAGGATGCCATTAAAGTTCATTGCAATATGGACACCGGAGAGACCTGCATCTCCGCAATACCTGCCAGCATCCCCAAGAAGTCATGGTGGAGTTCCCCAGGATCTAAACCTGTTTGGTTTGGAGCCAATATGAATAGAGGATCATATTTCACTTACGGGAATAAAGACCAGCCGGCCAACACTGTCACAGTTCAGATGACTTTCATCCGTCTGCTCTCCAAAGAGGCATCACAAACCATCACTTACCACTGCAAGAATACTGTGGGCTATAAGGATGAATCAACGGGAAACCTCAAGAAAGCAGTCATCCTCAAAGCTTCAAATGATCTAGAGCTCAAAGCTGAGGGAAATAACCGCTTTAGATACACTGTCCTTGAGGACAGCTGCTCACAAGCAAATGGTAAGTGGGGCAAGACAGTGTTTGAATACAGGACCCAAAAAACAGCTAGACTACCTATTGTGGATATTGCACCTGTGGACATTGGAGGTTCAGACCAGGAGTTTGGAATTGATATTGGGCCTGTGTGCTTCTTGTGAAGCAAGGAGTAGTGATGCATTGAAGAGATTCCTGAGACTCTTAAAGTGACTGCTGACAAGATCAGCCTTGTACATACAGAGCATTGGACTTTTCTGGCCCTGTAGCGAGATATTTATTGTGCCTTCCAAGCGTTTCAAGAAAACAACCGCTCCATAAGGTTTTTACAGATTGTTCCCTTGAAATTAGACATACAAATTAACAGAATTTTTATACTACAAGACTATTCATCAACTGCTGTTTTAAATTGAGATTGCCATTGCAAATAACACAGTAATGATGCTACACACTGTATACCAATTAAAACCATTTGGATGTTttcattacagtattttttttattattattttttacataaaaatggtgCTATAGAGGAAGTTTGCATTCAGTTGAGTGTATTTTGACTCTTAAAACTGTACTCTTGTACATTCACCTTGTAATTACTTTCAAAACCAACTTAcaattaaagatgaaaacagTGATTCATTA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251771.1 lncRNA downstream 57138 20632693 ~ 20637422 (-) True LOC122351564
TU106557 lncRNA downstream 64137 20612889 ~ 20630423 (-) False G71912
XR_006251768.1 lncRNA downstream 92003 20601984 ~ 20602557 (-) True LOC122351561
TU106618 lncRNA downstream 185858 20504326 ~ 20508702 (-) False G71940
TU106617 lncRNA downstream 185901 20504268 ~ 20508659 (-) True G71940
TU106635 lncRNA upstream 39077 20757618 ~ 20758206 (-) True G71957
TU106663 lncRNA upstream 474524 21193065 ~ 21193278 (-) True G71981
TU106668 lncRNA upstream 487674 21206215 ~ 21206762 (-) True G71984
XR_006251774.1 lncRNA upstream 514645 21233186 ~ 21245762 (-) True LOC122351567
TU106671 lncRNA upstream 516038 21234579 ~ 21245785 (-) False LOC122351567
XM_043248677.1 mRNA downstream 216827 20453526 ~ 20477733 (-) False LOC122351543
XM_043248676.1 mRNA downstream 216828 20448105 ~ 20477732 (-) False LOC122351543
XM_043248675.1 mRNA downstream 216828 20448105 ~ 20477732 (-) False LOC122351543
XM_043248679.1 mRNA downstream 216828 20451210 ~ 20477732 (-) True LOC122351543
XM_043248680.1 mRNA downstream 232095 20448104 ~ 20462465 (-) False LOC122351543
XM_043248707.1 mRNA upstream 10799 20729340 ~ 20731777 (-) True LOC122351555
XM_043248669.1 mRNA upstream 18482 20737023 ~ 20746870 (-) True LOC122351538
XM_043249007.1 mRNA upstream 29334 20747875 ~ 20750613 (-) True LOC122351730
XM_043249008.1 mRNA upstream 32111 20750652 ~ 20751262 (-) True LOC122351731
XM_043248709.1 mRNA upstream 32728 20751269 ~ 20752980 (-) True LOC122351558
TU106614 other downstream 190670 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 190670 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 801245 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 889961 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 972823 19720498 ~ 19721737 (-) False ankar
TU107092 other upstream 990747 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1452922 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1580631 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 1740855 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 3211666 23930207 ~ 23931329 (-) True G72930

Expression Profile