RNA id: XM_043248675.1


Basic Information

Item Value
RNA id XM_043248675.1
length 2080
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC122351543
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20448104 ~ 20477733 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGAAAAGCTCCTCTATCCAGTAGGTGCGCAAAGTGTTGGAATTGGTTGTGCCGTTGCTTCCAGGACTACAAGTTGTCTTCTAGCGTTATTAAAAATAGACGTTAAACCGAATTAGCTCGACAAGATTGAGATGTTACAGTTTAGGGCTTCAATTGTGCTGAAGGAGTTGATTCAAAACAGCCCAAAGCGTTCGTTTTCTGACATTATAAAGCATAAGAAGTCTTCACCAAATGCGTACATCTACAGCGCTGCTTATCCGGATGGCAGAGTATCTAAATTAAAGACTGTCTGTAATGGAAGACCTTCTATTCTGCCTTTAGCTGGGAGAAGATTCCTATGTACAAAGACCGAAGGAGCGATTGACCCTACAGAACCGGTCAAGAAAGATGAGTCCGTCCACGAAGCGACGGCAGATAAGAGAAGGAAGGCTGGCATCTTGCCCAGCTTGGAAGACTTGCTGTTTTACAGTATTGCTGAAGGCCAGGAGAGAATACCGGCTCACAAATTCATTACCGCACTGAAGGCCACTGGACTTCGAACGGGAGATCCACGGCTGAAAGAATGTATGGACATGTTGAAAGTCACCCTCAAATCCACATCAGATGGCGTGATGCTGGACCGACACCTGTTCAAAAAGTGTGTCCAAAGCAACATTGTTCTCCTAACGCAGGCCTTCCGGAAGAAGTTTGTCATCCCTGATTTCCAGCCTTTTGCCTCCCACATTGATACACTTTATGAGAAGGCCAGAAATCTCTCCGGGGGGCTGGTTGCTGACTACATTCCCCAACTTGCCAAATTCAGCCCAGATTTGTGGGCCGTTTCCCTTTGCACAGTCGATGGACAAAGACACACAGTGGGTGACACTAAAGTGCCATTTTGCCTGCAGTCGTGCGTGAAGCCACTCAAGTACGCTATTGCCGTGCATGACCACGGCACTGAATATGTGCACCGATTCATTGGGAAAGAGCCCAGCGGCTTACGCTTCAACAAGCTCTTCCTGAACGAGGAAGACAAACCCCATAATCCAATGGTGAACGCTGGTGCAATCGTGTGCACCTCTCTTATCAAGCAAGGGGCAAGCAATGCTGAGAAGTTTGATTATATGATGAACTTCTTGAAGAAGATGGCAGGAAATGAATATGTTGGTTTCAGCAATGCCACATTTCAGTCAGAGCGTGAGTCAGGAGACAGGAATTTCGCTATTGGCTATTacctgaaagaaaagaagTGCTTTCCAGATGGTACAGACATGACTGCTGTTCTGGACCTCTACTTTCAGCTGTGCTCCATCGAGGTAACTTGTGAGAGCGCTAGCGTCATGGCTGCCACATTGGCCAACGGCGGCTTCTGTCCAATCACAGGCGAGCGCGTGCTGAGCCCAGAGTCCGTGCGAAACACCCTCAGCCTCATGCACTCCTGTGGCATGTATGACTTCTCCGGGCAGTTTGCTTTCCATGTGGGTCTTCCAGCCAAGTCAGGTGTGGCTGGAGGTATTCTGCTGGTTGTGCCCAATGTAATGGGCATCATGTGCTGGTCTCCTCCATTGGACAAACTTGGCAACAGTGTCCGGGGCATCCAGTTCTGCACGGATCTGGTGTCCTTGTTCAACTTCCACAACTATGACAACCTGAGGCACTTCGCCAAGAAGCTCGATCCTCGCAGAGAGGGAGGGGACCAGCGGGTGAAATCAGTCATCAacctcctctttgctgcctacACAGGAGATGTTTCTGCTCTCAGAAGGTTTGCGCTGTCCTCCATGGACATGGAGCAGAGGGACTATGACTCCAGGACGGCGCTGCATGTAGCAGCCGCTGAGGGACATATTGAGGTTGTGCGTTTTCTGTTAGAGGCCTGCAAGGTGAACCCTGGTCCTAAGGACAGGTGGGGCAACACACCTATAGATGAGGCGACACACTTCGGTCATCACGAGGTGCTCGCGCTTCTGCAGGAGTACAACGATAAATACAACCCACCGGCGAACACCGGCGCGGGTAAAGAGAGCACCGAGAAAAATCTGGACGGGATGCTGGAGACGTAAACATTTCCTGCCAGCACGAAAGACACTCTTCTGGATC

Function

GO:

id name namespace
GO:0006541 glutamine metabolic process biological_process
GO:0004359 glutaminase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251769.1 lncRNA downstream 13136 20434116 ~ 20434969 (-) True LOC122351562
TU106577 lncRNA downstream 58406 20378652 ~ 20389699 (-) True G71924
TU106560 lncRNA downstream 145669 20297199 ~ 20302436 (-) False LOC122351563
XR_006251770.1 lncRNA downstream 145677 20296930 ~ 20302428 (-) True LOC122351563
TU106568 lncRNA downstream 230058 20215420 ~ 20218047 (-) True G71919
TU106617 lncRNA upstream 26536 20504268 ~ 20508659 (-) True G71940
TU106618 lncRNA upstream 26594 20504326 ~ 20508702 (-) False G71940
XR_006251768.1 lncRNA upstream 124252 20601984 ~ 20602557 (-) True LOC122351561
TU106557 lncRNA upstream 135157 20612889 ~ 20630423 (-) False G71912
XR_006251771.1 lncRNA upstream 154961 20632693 ~ 20637422 (-) True LOC122351564
XM_043248704.1 mRNA downstream 11204 20435745 ~ 20436901 (-) True LOC122351552
XM_043249005.1 mRNA downstream 19388 20426727 ~ 20428717 (-) True LOC122351726
XM_043249004.1 mRNA downstream 21378 20422913 ~ 20426727 (-) True LOC122351725
XM_043248703.1 mRNA downstream 24906 20421682 ~ 20423199 (-) True LOC122351551
XM_043249003.1 mRNA downstream 26423 20417872 ~ 20421682 (-) True LOC122351724
XM_043248671.1 mRNA upstream 216828 20694560 ~ 20718541 (-) False col5a2a
XM_043248670.1 mRNA upstream 216828 20694560 ~ 20718541 (-) True col5a2a
XM_043248707.1 mRNA upstream 251608 20729340 ~ 20731777 (-) True LOC122351555
XM_043248669.1 mRNA upstream 259291 20737023 ~ 20746870 (-) True LOC122351538
XM_043249007.1 mRNA upstream 270143 20747875 ~ 20750613 (-) True LOC122351730
XR_006251780.1 other downstream 554790 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 643506 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 726368 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1878223 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 3192614 17235872 ~ 17255491 (-) True G71118
TU106614 other upstream 11432 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 11432 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1231556 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1693731 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1821440 22299172 ~ 22307013 (-) False LOC122351746

Expression Profile