RNA id: XM_043248706.1



Basic Information


Item Value
RNA id XM_043248706.1
length 1288
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC122351553
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20401384 ~ 20403699 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCAACGGTCCCGCCCCCGTCGCCACGCCGACAGATGTGCAAGATGGCCCAGCGGTTTACATTTTACGTTTGTTTGATTTTGTCCCTCAATCTCTCCATCGTAGTGATTCGGGCAAATGAACCGAATCAAGATTTAAAAATTGAGGTTACGTTTCTGCCAGAAAACTGCAGCCAGAAAGCAAAGAGAGGAGACATGCTGAATGCTCATTATGATGGATATCTAGCTAAAGACGGATCTCAGTTCTATTGCAGTCGTTCAACAACCACGGGTCACCCACATTGGTTTGTGTTAGGCGTTGGAGATGTTATTAAGGGACTCGACTTAGGCCTGGACGGCATGTGTCCAGGTGAGAAGAGAAAAGTTACAGTTCCTCCGTCCCTGGCATACGGCGAGAAAGGAAAAGGTCCTGTACCACCAAATGCAACGGTGATCTTTGAGGTGGAGCTGTTGCACATAACCAGAGGACCACGCAGCATAGAAGCTTTCAAAGAAATTGACATTGACAACGACAAGGCCTTGACAAAAGAAGAGATTAAGGAATACTTAAAAATGGAAGCAAAGAAGTTAAAGTCAAAGAAAGATGAATCCTATTTTGATGATGTTGTGGCAGATGTGTTCCATAAGAATGATCACAATGGCGATGGGACCTTATCACTAAAGGAGTACAATGTTTACGGTCATGATGAACTATAAACACTACTAGACATTTTTATGCAGCAGGTGCATTGGATATTGTCAACAAGACTATAGAGTTGTAGAGTTGATAAAGGATTTTGTTTTGATGAACACCActacattttgaataaacttGACTGAAATACTAACTTGTACTATTGCAAAAACCTAATAaggcataaatgtttttttgaaatgctGGCACCTGCTTAAATTTATCATTATTCTAATGCTCTTCACGCTAAGaaacaaatgttcttttaaaaactgttcaaaGATAGTTTTAGGGGACCAAAAATAGGTTTTCAATGGCATAGCTGCAAAAatccactttttttgaaaagcatAGACAACCTTGAACacatcaaacaatgcaaaacTGCACAAATGTGCAATTACTAATAGACCAATATAATCCATATTGATCAACCACTATTTATAGCCAAATAAATCAGGCATTTGAACCCAAGGATTGCTTTTATAGCTCTGTTTAAATCATTATCATATTAAATGGCAACTTtacaaaaattactaaaacagcattttatacagtatacagtgaccctgtgaaataataaagaagTTTCCATGACACATGGTTTACGTGATTTTA

Function


GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09573 FKBP7; FK506-binding protein 7

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU106577 lncRNA downstream 11685 20378652 ~ 20389699 (-) True G71924
TU106560 lncRNA downstream 98948 20297199 ~ 20302436 (-) False LOC122351563
XR_006251770.1 lncRNA downstream 98956 20296930 ~ 20302428 (-) True LOC122351563
TU106568 lncRNA downstream 183337 20215420 ~ 20218047 (-) True G71919
TU106551 lncRNA downstream 232780 20163123 ~ 20168604 (-) True G71912
XR_006251769.1 lncRNA upstream 30417 20434116 ~ 20434969 (-) True LOC122351562
TU106617 lncRNA upstream 100569 20504268 ~ 20508659 (-) True G71940
TU106618 lncRNA upstream 100627 20504326 ~ 20508702 (-) False G71940
XR_006251768.1 lncRNA upstream 198285 20601984 ~ 20602557 (-) True LOC122351561
TU106557 lncRNA upstream 209190 20612889 ~ 20630423 (-) False G71912
XM_043248701.1 mRNA downstream 106006 20271220 ~ 20295378 (-) False tfpia
XM_043248699.1 mRNA downstream 106006 20271220 ~ 20295378 (-) True tfpia
XM_043248702.1 mRNA downstream 106006 20272793 ~ 20295378 (-) False tfpia
XM_043248700.1 mRNA downstream 106008 20271220 ~ 20295376 (-) False tfpia
XM_043249235.1 mRNA downstream 130852 20248988 ~ 20270532 (-) True calcrla
XM_043249002.1 mRNA upstream 7696 20411395 ~ 20417109 (-) True LOC122351723
XM_043249003.1 mRNA upstream 14173 20417872 ~ 20421682 (-) True LOC122351724
XM_043248703.1 mRNA upstream 17983 20421682 ~ 20423199 (-) True LOC122351551
XM_043249004.1 mRNA upstream 19214 20422913 ~ 20426727 (-) True LOC122351725
XM_043249005.1 mRNA upstream 23028 20426727 ~ 20428717 (-) True LOC122351726
XR_006251780.1 other downstream 508069 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 596785 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 679647 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1831502 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 3145893 17235872 ~ 17255491 (-) True G71118
TU106614 other upstream 85465 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 85465 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1305589 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1767764 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1895473 22299172 ~ 22307013 (-) False LOC122351746

Expression Profile


XM_043248706.1 Expression in all Baseline Samples

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XM_043248706.1 Expression in each Bioproject

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XM_043248706.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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