RNA id: XM_043248709.1



Basic Information


Item Value
RNA id XM_043248709.1
length 1293
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC122351558
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20751269 ~ 20752980 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGAGGCTGAATGCAAAGCCCTAACATGTGAAATTAAAAGACTGTTTAAGAACAATGAATATATCTTCCGTGTGAGAGGTGTAAACAAGTATGGATCTGGTGTGGTAGTACAGTCTACTCCCATCTTTGCCCGAAACTCATTCACTGTTCCATCACCACCTGGAGCTCCAGAAATCCTTGCAGTTGGAAAAGACTTTGCAACGATTGAGTGGCTGAAGCCTGAGAGTGATGGTGGCAGTGAAGTCACAAACTACTTGATTGAGTTCCGTGAAAGAAAGAGTGTTCGTTGGATCAAGGTTAACAGAGATTCTGTTCTCAAGGACACATCCTTCAAAGTCACTGGCCTCCATGAAGGCAACATTTACCAGTTCCGCATTACAGCCATGAATGCAGCTGGTGATAGTGAACCTAGTGAAGTGTCAATGTATGCAGTATGTAGAGTACCAACAGGCACTCCAGATCCACCTTCAATTCCACGGGTTACAGACACCCACAAAGATAATATTAGCCTTGCTTGGACACGACCAGTTGAAGATGGGGGTGCTGATGTTATTGGTTACGTTCTTGAGATGCAAGAAGCAGGGGCAGAAGAATGGACAAAAGCGCATGAAAAGAATCTTAGGGTGACAGAACACACAGTTACAGGTCTTTCTGCTGGCAAAAATACTGTTTCAGAGTTGCAGCGGTCAATGTAAATGGAACAGGTGACTTCCAGTGATCCTTGCGCAGAGACTGAGCCTGTGGAAAGAATCGAAATTCCTGACCTTGAGCTACCTGATGAGCTGACAAAGACAATTTGTCTAAGAGCAGGAAGTTCTCTTCGCCTCCATGTTACTGTTACTGGTAGACCGATCCCAACTGTAACGTGGACCAAACCTGGCGTGGACCTCCAAAATCGTGGCTTTATTGAAGTAACCAATACTGCTACAACCCTCATTATTGATAAGGTGCACCGCTATGATGCCGGTAGATATACCATTGAGGCTTCAAATTCAGCTGGGAAGAAGGATGCAAGCATTCTTGTGAAAAtctatgATACACCTGGTCCAACTGGTCCAATTAAGATGAAAGAACTTACAAAAGATTCTGCTCATATTACTTGGGATGCTCCTGAAGTTGATGGTGGAGCACCTGTCAATAATTACATCATTGAAAGAAGAGAGGCATCAATGAGAGCATACAAAACTGTCACATCCAAATGTAGCAAGACATCATACAAAATAACTGGTCTGACAGAAGGAATGCTGTATTATTTCAGAGTCTTACCAGAGAATATCTATGGTGTTGGTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006251771.1 lncRNA downstream 113847 20632693 ~ 20637422 (-) True LOC122351564
TU106557 lncRNA downstream 120846 20612889 ~ 20630423 (-) False G71912
XR_006251768.1 lncRNA downstream 148712 20601984 ~ 20602557 (-) True LOC122351561
TU106618 lncRNA downstream 242567 20504326 ~ 20508702 (-) False G71940
TU106617 lncRNA downstream 242610 20504268 ~ 20508659 (-) True G71940
TU106635 lncRNA upstream 4638 20757618 ~ 20758206 (-) True G71957
TU106663 lncRNA upstream 440085 21193065 ~ 21193278 (-) True G71981
TU106668 lncRNA upstream 453235 21206215 ~ 21206762 (-) True G71984
XR_006251774.1 lncRNA upstream 480206 21233186 ~ 21245762 (-) True LOC122351567
TU106671 lncRNA upstream 481599 21234579 ~ 21245785 (-) False LOC122351567
XM_043249008.1 mRNA downstream 7 20750652 ~ 20751262 (-) True LOC122351731
XM_043249007.1 mRNA downstream 656 20747875 ~ 20750613 (-) True LOC122351730
XM_043248669.1 mRNA downstream 4399 20737023 ~ 20746870 (-) True LOC122351538
XM_043248707.1 mRNA downstream 19492 20729340 ~ 20731777 (-) True LOC122351555
XM_043248671.1 mRNA downstream 32728 20694560 ~ 20718541 (-) False col5a2a
XM_043249009.1 mRNA upstream 2916 20755896 ~ 20757113 (-) True LOC122351732
XM_043249010.1 mRNA upstream 7066 20760046 ~ 20761027 (-) True LOC122351733
XM_043249011.1 mRNA upstream 16765 20769745 ~ 20771153 (-) True LOC122351738
XM_043249014.1 mRNA upstream 415959 21168939 ~ 21170775 (-) True LOC122351741
XM_043248710.1 mRNA upstream 991063 21744043 ~ 21896047 (-) True LOC122351560
TU106614 other downstream 247379 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 247379 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 857954 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 946670 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 1029532 19720498 ~ 19721737 (-) False ankar
TU107092 other upstream 956308 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1418483 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1546192 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 1706416 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 3177227 23930207 ~ 23931329 (-) True G72930

Expression Profile