RNA id: XM_043248712.1


Basic Information

Item Value
RNA id XM_043248712.1
length 2500
RNA type mRNA
GC content 0.52
exon number 8
gene id ehhadh
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8510712 ~ 8519346 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAATTTGTAAAGTCGTTTCCGGGAACGAGAGTGCGGCGACAAGAtgttatttgaataattttagctttttttttggtgaagcGGCGTTTTCTGCTCTCGCTGAAAGTCAGTTGTCATGGAGAACGCGCGAGAGCCTCGCTCGAGGACGCGAGCTCCACCGAGAGAGCAGTGGGAGTGACACATTCACTGCGTCCAAAGTCAAAGTTACAAAGTCCCGCGTTTCTTTCAgctcacaacaacaacaacgtccAGCTCAGCAAAATGGCCCGATATGAACTTGTTAAACGATCAATTGCTCTGATCACTCTTACCAACCCGCCAGTCAATGCCTTGAGTTCTTCAGTGCGTCATGCCATCGCTAAGAGCATGGAGCGTGCCCTGCATGACCCAAAGGTCACGGCGGTGGTCATCTGTGGAGAGAGTGGAAGGTTTTGCGGAGGTGCAGACATCCGTGAGTTTGCCGGGCCTTTAAAAGGACCTCCGTTGGTGCCCCTGTTGGATGCCGTAGAGGCAGGAGAGAAACCTGTGGTCGCTGCCATAGAGGGGGTGGCTCTCGGCGGGGGCTTCGAATTAGCCCTTGTCTGTCACTATCGTATCGCGCACTCTAAGGCACGTCTCGGGCTTCCAGAGGTGACTTTGGGCATCCTGCCAGCTGCAGGGGGGACGCAGCGTCTTCCCAGGCTCATTGGCATCCCTGCTGCCCTAGAACTGATCACCACGGGCCGCCATATCTCCGCGCAGGAGGCCCTGAAGCTGGGCATCGTTGACCAGGTCACGGAGCAGAATGCTTGTGAGGTGGCTGTGGAGTTTGCCCTGAGAGCTGTAGCCAAACCGTTGTCTTCCCGAAGAGTGAGCATGCTGACCACACCCTGCCCTCCAGATCTAGATGCCCTCTTGGAATCGGTCACCATGCAGGTTAAAAAGAAGGCCCGAGGAGTGATGGCACCTTTGGCTTGTATTCAGGCGGTGCGGGCAGCCGCTACAATGCCTTACAGCAAGGGAATCAAGCGGGAGAGTGAACTGATGGCCACTCTTTTCAACTCCGGCCAGGCCCGGGCTCTACAGTACTGCTTCTTTGCGCAGAGGACTGCTGGGAAATGGACTCTACCCAGTGGAGCGCAGTGGAACAAGAGCAAACCCAGAGAGATCCGGAAGGCTGCCGTCATAGGTCTGGGCACTATGGGCAGGGGCATTGTTGTGTCTCTGGCACGCGTGGGAATTTCTGTCATTGCTGTAGAGTCAGAAAATAAACTCTTGGAGACCGGCAAGCAGATGGTGATTGGCATGTTGGAGAGAGATGCCAAAAGACGGGGAGTGAGTGCCTCTCTCAGTCTCCTCAAATTCACCCTCAGCTTACAGGACCTGAAGGATGTGGATCTTGTTATCGAAGCTGTCTTTGAAGACATGGCACTTAAGAAGCGTGTTTTCCAACAACTGTCCAAAGTTTGTAGACCAGAGACTCTACTCTGCACTAACACCTCTGGTCTGGATGTGGATGCTCTGGCTGATGTGACTGACAGACCTCACCTGGTGGTTGGGATGCACTTCTTCTCACCTGCACATGTCATGAAGCTCCTAGAAGTTGTCAGCGGTCCTCGTTCCTCAAGCGAAACCATTGCTACAGCAATGAGCCTTGGGAAGAGGATGGGAAAGGTAAGCGTTGCTGTAGGAAACTGCCCCGGTTTTGTTGGAAACCGCATGCTGAAGCCTTACCTGGATCAAGCCACCTTCCTGCTGGAGGAGGGAGCCACACCTGAACAAATCGACGAGGCTCTGGAGGAATTTGGTTTTGCGATGGGAGTCTTCAGGATGTCTGATCTGGCAGGCCTTGATGTTGGTTGGAGAGTCCGGAAGGAATCTGGGTTAACCGGTCCTGACATTGACCCAAAAAATCCCCCACGTAGGCGCCAAGGGCGCAGGTACTGTCTTCCAGACATGGTCTGCGAGCAAGGCAGGTTTGGCCAAAAGACAGGTCGTGGCTGGTACATGTACGACAAACCTAGAGACACAAACGCAAAGCCCGACCCACTAATTCAGAATCTCCTTGAGATGTACAGGAGCAGGTACGGCATTCAACCGCGCAGTATCTCAAATCAAGAAATAATCGAGAGATGCCTTTTCGCCCTGGCCAACGAGGGCTTCCGTATCCTGGAAGATGGCATAGCTGCCCGACCTGAGGATATTGATGTCATCTATCTGTTCGGTTACGGTTTTCCAAGGCATCGAGGTGGGCCCATGTTCTACGCCAACATGGTGGGCCTGGAAAGAGTGCTGGAGAGGTTGGAGCATTATCACCGAGCCCACCCTGATGTGCCTCATTTGGAGCCCAGTCCACTTTTGAAAAACCTTGTGGCCTGTGGCAGTCCTCCTGTTCAAAAATGGAGAGAGCATATCAAAACAGTACGCAGCCATCTCTGAACACACAACATGgcaaatttgttcattttaaaacaccgCTAAAGTTGTTATTAATAAAGAATTTACTTTCTCAACTCTTAA

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005777 peroxisome cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07514 EHHADH; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3,2-trans-enoyl-CoA isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101678 lncRNA upstream 4569 8502756 ~ 8506143 (+) False igf2bp2a
TU101562 lncRNA upstream 287895 8222587 ~ 8222817 (+) True G68678
TU101545 lncRNA upstream 304749 8203853 ~ 8205963 (+) True G68668
TU101216 lncRNA upstream 656434 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 1174353 7335491 ~ 7336359 (+) True G68435
XR_006251751.1 lncRNA downstream 81378 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 306866 8826212 ~ 8827046 (+) True G68808
XR_006251839.1 lncRNA downstream 340127 8859473 ~ 8860379 (+) True LOC122352063
TU101765 lncRNA downstream 347793 8867139 ~ 8868277 (+) False fev
TU101845 lncRNA downstream 528114 9047460 ~ 9078537 (+) True G68879
XM_043249496.1 mRNA upstream 5916 8460744 ~ 8504796 (+) True igf2bp2a
XM_043249497.1 mRNA upstream 5916 8460744 ~ 8504796 (+) False igf2bp2a
XM_043249498.1 mRNA upstream 5916 8460744 ~ 8504796 (+) False igf2bp2a
XM_043249449.1 mRNA upstream 51387 8453605 ~ 8459325 (+) False tra2b
XM_043249450.1 mRNA upstream 51387 8453606 ~ 8459325 (+) False tra2b
XM_043248716.1 mRNA downstream 1588 8520934 ~ 8528871 (+) True zgc:162707
XM_043248052.1 mRNA downstream 47108 8566454 ~ 8569997 (+) True nup35
XM_043249719.1 mRNA downstream 131821 8651167 ~ 8702295 (+) True znf804a
XM_043249543.1 mRNA downstream 273971 8793317 ~ 8797935 (+) True zc3h15
XM_043248053.1 mRNA downstream 281951 8801297 ~ 8824391 (+) True itgav
TU101615 other upstream 77229 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 168033 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 2545832 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2624959 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 3053183 5457458 ~ 5457529 (+) True trnam-cau_112
TU101764 other downstream 345303 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 623246 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 623246 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 923779 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1809385 10328731 ~ 10395230 (+) False il1rapl1a

Expression Profile