RNA id: XM_043248716.1


Basic Information

Item Value
RNA id XM_043248716.1
length 1401
RNA type mRNA
GC content 0.53
exon number 3
gene id zgc:162707
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8520934 ~ 8528871 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGGGAGATTGTAGCGCCGTCTGCTGGTCACGTGTCGCCACTGCCGCTACGTGCGGTGTGATATATCCGTCCGCGTGCGAGGCGAGCGTCTCTCAGTCCCGCAGCGGCGTCCACCGCGACAGCAGCGCGAGGAGCTCACGCGCCACCGCTCTCTCGTCTCACATAAGTTTCAGCCCGTGCTTCTTTGACGAGCCCCCCCCCTCTCTTTAAATAGCTAACGCTCCAGGACCCTTCACGCGCGCGATTGTTCCTCAACAGAGACCCGgcagccgccgccgccgccgctctTTTAACTCCGCTCACTTGACGTTTCTTTGGAAATCTACGAAAACCCGAGGATTATCCGAGTGGCCATTTGTCAGTTTAacgtggggaaaaaaatgccaTTCTTCGTATCCCGCGCGACTACTGGGATCTAGCCGCAGATGTTGTGGGAAGTTTAAGGCGGACGCTGTGAGATGGCTGGAAATCCTCATCAGCTCTAAGTGCTCGACCCTCAACAAGTAAACCATGGCTTACGCCGGAGCTCAGAAGGCTTTGAAGAGCGATAAGTTAGATGAAGCTCAAGCTCTGGCCAAAAGCTGTGCGGGGAGGCCGGACTTTCTCCCCTGCGATGGACTGTCCATCTGCGCCACACACAGCCACGGAAAGTGTTTCAAACTGCACTGGTGCTGCCATTTGGGCTGGTGTCACTGTAAATATGTCTACCAGCCCATGACCAATGTTTCTCAGCTACCCAGCACACCTGTGCCGGCCGCTCCGTCCGAGTGTACCGACACCATCGATCTGTCCATCTCTCTGACTGAGCGCTTTCTCCGCATCTCACCCTTTTTCCTGCCTCCGCCTTGTCCCGAATCTCCCAAATATTGCAACATTGCCGAACTGTTTATCGATGACTACATTGTCAAACGCATCAACGGCAAAATGTGCTACGTTCAGCGGCCCCCACTTCACACGGAGGCCCCTCCCACTCCACCTCAAATAAATCCCGCCTCTCTGACGCCACAGAAACAGCAGCAGACTGTTGAGGAGACTGTTAAAGGACCAAAAATGGGCCACTGCTCTTCGCCCTCCAACTCCGAGGACTCGGGGATCAACGCTTTGGGAGGACACTATCTGGAGTCCTGTGAGGAAGAGTCTGAGGAAGAGGATGAACTTAGCACCGATGGACACTCGAGTCCGGGAAGTCTATGGGACCAGGATGAATGCACCCTACTGTCCCCTTCCAAATCCATTGTGGAGATCATTGAAAACATTGAAACTACTGTGTAATGTTtgctctttttgttcttttcacatatctctctctctttgtctgacAAGATAAACTCATTGTTGTAAAAGAAATCttgtatttaaaggaaaaaatgctACACCCATAAAGACAGTGCTATACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101678 lncRNA upstream 14791 8502756 ~ 8506143 (+) False igf2bp2a
TU101562 lncRNA upstream 298117 8222587 ~ 8222817 (+) True G68678
TU101545 lncRNA upstream 314971 8203853 ~ 8205963 (+) True G68668
TU101216 lncRNA upstream 666656 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 1184575 7335491 ~ 7336359 (+) True G68435
XR_006251751.1 lncRNA downstream 71853 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 297341 8826212 ~ 8827046 (+) True G68808
XR_006251839.1 lncRNA downstream 330602 8859473 ~ 8860379 (+) True LOC122352063
TU101765 lncRNA downstream 338268 8867139 ~ 8868277 (+) False fev
TU101845 lncRNA downstream 518589 9047460 ~ 9078537 (+) True G68879
XM_043248712.1 mRNA upstream 1588 8510712 ~ 8519346 (+) True ehhadh
XM_043249496.1 mRNA upstream 16138 8460744 ~ 8504796 (+) True igf2bp2a
XM_043249497.1 mRNA upstream 16138 8460744 ~ 8504796 (+) False igf2bp2a
XM_043249498.1 mRNA upstream 16138 8460744 ~ 8504796 (+) False igf2bp2a
XM_043249450.1 mRNA upstream 61609 8453606 ~ 8459325 (+) False tra2b
XM_043248052.1 mRNA downstream 37583 8566454 ~ 8569997 (+) True nup35
XM_043249719.1 mRNA downstream 122296 8651167 ~ 8702295 (+) True znf804a
XM_043249543.1 mRNA downstream 264446 8793317 ~ 8797935 (+) True zc3h15
XM_043248053.1 mRNA downstream 272426 8801297 ~ 8824391 (+) True itgav
XM_043248054.1 mRNA downstream 298819 8827690 ~ 8831902 (+) True umps
TU101615 other upstream 87451 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 178255 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 2556054 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2635181 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 3063405 5457458 ~ 5457529 (+) True trnam-cau_112
TU101764 other downstream 335778 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 613721 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 613721 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 914254 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1799860 10328731 ~ 10395230 (+) False il1rapl1a

Expression Profile