RNA id: XM_043248735.1


Basic Information

Item Value
RNA id XM_043248735.1
length 4683
RNA type mRNA
GC content 0.44
exon number 7
gene id st6gal2a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6763869 ~ 6813022 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAGCCAATTTATTAGGAGGGACCACTCCACGGCAATAACACACCTGCAAGACGCACATCGAAAACCATTAACGGCGGGACAGACGAACTGTTTGAGGATAAATGGGTTCAAGGAAATAGGAACTACAGTGAAGGCCTCCTGCTGACCCTTCTGTAGTTGGGTCTGGAGTGCAGCGGTGTGCGGAGGAGAGGACTTCTGAAAGATGAAATCCAGTCTGAAACAATGGCGGCGGCTCGCCCTCGGCCTCATGCTAGTCTGGGTTCTGCTGTTTCTGGCGCTCCTCTCCTACTTCATGGAGTCCCGAGTGGACGACCCGCACTCGGTGGCCGCTCTCTCTTACACGGACACTCGCCGCCTGACCTCACTGCAGAGTAACCCCCGCACCATTATGGCCACCCACCTTGGGCTTGGCATCTCCTCAACCCCCCCTGCCTCCAGCAACACCCGACAAGAGAGAAGCCAGGAGGAAAACCCCAGCGCCGACCCCCAGCCCAGTCCGCTCAGCCAGGAGGCCTACCCCTATCCCGACCCTCAGAGCCTGGCGGCATGGTCTGCATTCGGCACCCAGGACGTGGGCTCCAGATCGGCCGCTGTGAGTCGCAACCGCGAGCGGCAGGAGTATAATCAGGATTCCCCTCAACAGGATGAAGAAGACGAGGAAGAGGTGGTGGGAGGGGAagaggaagacgaggaggaGGGAGATGAaggaaggaggaggaagacTAAACGGCTGGCTGTGCGTGACGACTCTGACCCCGATGAGTACTACATTCCCAGGTCGAAATCCGTAGTGCGCAGCCTGTGGAAAGGGAGTTTGTCCCTGGGCATGCTCAGTCCTCGCCTGCAGAGAGCTATGAAGGACTacctgaataataataaacacgGCGTGGCCTACAGGGGGCACCGGAAGGCTCAACAGAGCGGCCAGCAGGTGTTGTGTGAGCTGAAGAAGGGGGAAAAGGTTCGAACTTTGGATGGGGCCGAGATGCCTTTCTCCAATTTGGGCTGGCAGAAGATTGTGCCTGCTTTACCTTTAAGCCAGCTCTACGGGCCAGGCTTCCAGACCTGCGCTGTGGTCACCTCCGCGGGAGCCATGCTTCACTCGGGACTCGGCAAGGAGATCGACTCCCATGAAGCAGTGCTGCGTTTCAATACAGCTCCCACCGAGGGTTATGAAAGAGACGTCGGGAATAAAACCACGATACGCATCATCAACTCTCAGATCCTGGCCAATCCCAAGCATCAGTTCAACACAAGCACACTGTATAAGAATGTATCTCTGGTGGCGTGGGATCCTGCTCCATACACCCTCAACCTGCACAAATGGTATTCCAATCCAGACTACAACCTTTTCACTCCATATATGGAGCACAGGATGCACTTCCCCGCGCAGCCTTTCTACATCCTGCATCCGAAATACATCTGGCAGTTATGGGACGTGATTCAGGCTAACAATCTGGAGAACATCCAGCCCAACCCACCCTCCTCAGGGTTCATagGCATCCTGCTGATGATGTCCTTGTGTGAAGAGGTTCACGTGTACGAGTACATTCCTTCACTGCGGCAGACGGACCTGTGCCACTATCACGAGCGTTACTACGACGCCGCCTGCACCCTGGGTGCGTACCACCCCCTGCTCTACGAGAAGATGCTCATCCAGCGCATTAACGTCGGCTCAGAGGACGACCTCAAACGGAAAGGCAAGGTCACGCTCCCGGGGTTCAAGAACGTCCACTGTGAGCCCTGAACAGAAAGACGCAATAACGGCCTTTGTAAAGCAGAAGAGATCTGCAGACGGAGACTGTTGAGAACGGACCTTGTTCGATACGAGACGAAACCTTCTGCtgtagttcactcaaaaatgcattttctgagCCGAAGCTTAAATAAAGATGATCAGAACAGCAATAGATACGTCATGAGAAAAGCTTTTTAGATCTGTGGATGTTCATGGTGTTAAAAGCCATCAAAAAcagtgtttggtttttttttttttattatattatttttaatggaactCTGTTTTTTTCACAGGGTTGAAAGTATTAACAGTCATAAACACTGAAAGCTACACTGTTGAGGGACGAAAAGCATCCactcaaatgcattttagcacAGAGGCTAGATTTATTCTGActaaaaattagttttattaatctgttttccACATACTGACAGATTTTAAAGCTTCTCGCCATAATGCTAtgattgtttttgtatattagGTGTCGTTTTCTGCTGTAAAATACGTTGTGCCACATTCACAAGCCTCTTTGAGAATATTTTGCTCTTCCAGAACGTCTCTGAACTGTGGCAAATGAATTAAGAGTGTTTTCTTACTCTGTGTAAATGTTCCTTCAAGAGCAGAGTACATGTATGTACCTGTTATTTAAAACGGCTTAAAGGAGCTTCTGAATGCGTCCGTGGTTCGTTTAATTCTCTTCTAGTCGTTTTTCTACTTTGAGAAGCCTGTCTAGACAGGTGGTTTACAGAAAATAGTTATTATTGCTTGTACTATGGACTCATCGCAGCACTGTAAATCTTATTTGGGACTTTAAGGCTGCTGGCAATATAACAAGTACAGTGGtgatattatttgttaattctAACTTGAGGTTTCTAATGTCTTGTAGCCCCTAAAATCAAGAGGTTTTCTTGACTCTTTAAAAGCGAATGAATTATGTCGTCTTCTCTTAAATGTACAGATAATTTGATTCACTTTGCGGTTTGACTTTTTTCTACAGGAGGGAAAACTTGAAGGTTCGTTCTTTACTCATGTGCATTGTTTTCAATGTGTGCCATTTTTAATTGAGACGGAAAACGCTTTCTCGAGTGGATTTTCCTGGAGATCTTGTAAGGAAGAGCTAACGTCTGTTTTAATCGCTGTTGTATATTGTAGAAGTAAAACTAGTAATTGATGATTTCACTCAGGAGCTCGCGATACTCTCTTCACCGgggtgaaatatttaatttttcttctaGTCCTACGGATAGGCTGAGGTGTGTAAAGCTAATATTTGACCTTTACTCTGTCCTGTTTCCCCATGTTGGGGGATTGTAGATGTAGAGAAACTGAAGAGCAATGGCATTAGGTTCGCATGTTAAAGAAAAAACGGTTTCGAGCAGCTGAACCTGACTGCGTGTTGGGCCGGGCCGTGATTGTTGGGCACGTCTGACCAATCACTGTCCGTCTCACTTGCCTCCAgtctgtaatttaaatatttttttttttatcgaaaGGGTAGCAGGAAGGAAACGACTTGGAGGGTTACTGTTCAAATATTTGGGGGCATTACATTTGCtgttatttgttcaaaaacacagtaaagacattgatattgtaacataatttattacaatttaaaacgcttgttttctattttaatgtattttaaaatgtaacttattcctgcggctggattttcagcatcattactgcggTCTTCAGTATGAGAAATATAGAGATTTGGTGCTCAAACAAACACTTCTCATCAAAATTGAATACAGCGTTTATGTGAAATGGAAACTGCGTTACATTTGTGacattattcatgtttttactgtcacttttgatcaatttgatgTGTAACCAGTCCGTATaattttgaacagtaatgtcTAGTAACCATCAGGCCGTGGCTTTGCCTGACGGTTGTTTATCCATGTGACCAATCGGTCATGTGACCTACGGAAGGACTAAACTCTGCCTTCTACTCtctctttagtttttttacatgctCTACGATCGGAGGCAGAATCGTGTGTCCTTCCTCTGTGAATGTCTTTTCTCAAGCCTTTAACGAGGTGTTTCAGCGGCGTGAACCCGGTCCCGTTTCTCACCGACGAGAGACTAGGTGACTGGACATACGGCCGTTTTTAAGAGTATTATTTGAGATGTTTACTGtaaatagtttagtttttttttttttttttttttatgtcatggGGTGATATGACTACTTTTGGGGGTGGGGTGGGGAGGGGTGTACATTGAGAGCATGTGACAGAAAGCAGGGCTTGTTAGTGTTCATGGTAAATACATTTGCAGTTCTAGAAATGGTAGGATTTAGCCTGTAACGGGAAATGTGAGCTGGGTCTCTaggtttaggttttgagcatatAGTCTTTGCTaaagaaaagaggaaatgcAGGTGTCAATGCTGTGTCATAGATATGCACAGTACAATTCAGAGGACTGTGCCAAATGTGCTGTTTtcctaagtgtgtgtgtgtgtgtgtgtgagagagaaaatgttTGAATGGTACTACATTCGTGGTGCTGTGTATCTGTGCCAACTTtcctttttgcacttttaaaacttacttttaatctttttcttttcggCTTCTCTACCTTTTCAtaaatttccttttaaatgtccatattgttttctgtaattttgCACCACAGCCTTTTTTTGTCGTTCGTCTCGTctttgtttcgttttttgttttttgtttttgtttctttgtctgtTAAAGGTCTGTGAAAAGTCTTGATTTTTAGACTGTAAATATCTGCAATTGTGTATTACAGGCCAGTTTACTTTTAAAAGCCATGGgatgttttataatgttaattcataattgtcattgaattaatttttaaaccaCTTAATGTTTCTGTATTCTTTTGACCATTGTTTCGATAATAAAACCTTAACCTTTACCTGACCCAGTAA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003835 beta-galactoside alpha-2,6-sialyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100960 lncRNA upstream 74738 6707841 ~ 6708193 (+) True G68254
TU100958 lncRNA upstream 88020 6694678 ~ 6694911 (+) True G68252
TU100957 lncRNA upstream 91091 6691342 ~ 6691840 (+) True G68251
TU100954 lncRNA upstream 98435 6682624 ~ 6684496 (+) True G68248
TU100953 lncRNA upstream 109281 6673105 ~ 6673650 (+) True G68247
TU101009 lncRNA downstream 94716 6907738 ~ 6943321 (+) True G68296
TU101019 lncRNA downstream 150133 6963155 ~ 6974701 (+) True G68304
TU101024 lncRNA downstream 178811 6991833 ~ 6995856 (+) True G68309
TU101167 lncRNA downstream 386247 7199269 ~ 7199817 (+) True G68405
TU101162 lncRNA downstream 443658 7256680 ~ 7259394 (+) True G68401
XM_043249763.1 mRNA upstream 65134 6710206 ~ 6717797 (+) True pdzk1
XM_043248303.1 mRNA upstream 521842 6246813 ~ 6261089 (+) True irs2b
XM_043248545.1 mRNA upstream 589701 6177073 ~ 6193230 (+) True LOC122351469
XM_043248611.1 mRNA upstream 752609 6005352 ~ 6030322 (+) True LOC122351516
XM_043248613.1 mRNA upstream 778579 6002775 ~ 6004352 (+) True LOC122351517
XM_043248631.1 mRNA downstream 29556 6842578 ~ 6880028 (+) True uxs1
XM_043249412.1 mRNA downstream 143499 6956521 ~ 6964046 (+) False fhl2a
XM_043249413.1 mRNA downstream 144975 6957997 ~ 6964046 (+) True fhl2a
XM_043249411.1 mRNA downstream 144978 6958000 ~ 6964046 (+) False fhl2a
XM_043248363.1 mRNA downstream 287407 7100429 ~ 7106362 (+) True mfsd9
TU100736 other upstream 818051 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 897178 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1325402 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1325668 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1326088 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 1528276 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1618123 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 2051627 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 2329570 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 2329570 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile