RNA id: XM_043248737.1


Basic Information

Item Value
RNA id XM_043248737.1
length 3565
RNA type mRNA
GC content 0.42
exon number 4
gene id tmtops2b
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6807329 ~ 6832254 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCGATCGGCAAAGCTCGCGCGCCCAGCTGCTGAGCTACGGGTTCACAGCTGGGACCGGCAAGCATTTTGCCCCTAGAATGCAACTTTGCGCAGCAGACAAATGAAGTAGCACCGTTCATTTGAACGTCACgtaaaaagctgaaaactgTTGAGAAACTCTGATGGATACTGCGCACTTTAATGAGCAGTACAGGCTGCCTGCTACTTAGAGAGTCAGTTTGCGTGCCTCCTTTGAGCGTCAAGCCCATCTGTCAGCAGTCCAAAGTGTCCTCAGAGGTGAAGCGCGCTGTCAGTgacaatcatcatcatcaccaccatcatcatcatcatctgcacCGAGTTATGATGCTGACGCGCCGCGCCGCGCCGACGCGTTCTTTAAAACGAGAGTAACCGGTGAATTAGAGGCTGTCGCCTCTCGAAATCCAGCACCAACTTTTCTAACTATGTTTTTCGAGCAGGCTGATTTAAACTACAGCTTTAACATGAGCGAGGAAGACCGGCTAACTCTTCTGGACGGGGACTGGAGCGACTCGCCGGTGGAGACGCTCTCCCGCGCGGGCTTCATCGCTCTGTCCGTGTTCCTGGGATTCATCATGACTTTCGGCTTTTTCAATAACTTCGTCGTGCTGGTCCTCTTCTGTAAGTTCAAGACGCTCAGGACGCCGGTTAACATGCTGCTTCTTAACATCAGCGTCAGCGACATGctggtgtgtttgtttgggaCGACCCTGAGCTTCGCGTCCAGCGTGCGGGGACGGTGGCTGCTTGGACGGCACGGCTGCATGTGGTACGGCTTCATCAACTCCTGCTTCGgCATTGTGTCTCTGATATCCTTGGTGGTTCTTTCTTACGACCGCTACAGCACATTGACGGTGTACCAAAACCACGGTCCAGACTATCGCAAACCTCTTCTGGCAGTAGGGGGTTCGTGGCTGTACTCTTTGATCTGGACAGTGCCCCCTCTTCTGGGCTGGAGTAGCTATGGTCTGGAGGGGGCAGGAACCAGCTGCTCTGTATCTTGGACCGAGCGCACGGCCCAGTCTCATGCCTATATCATCTGCCTGTTCATATTCTGCTTGGGCCTACCAGTGCTCGTCATGGTCTACTGCTATGGGAGACTGCTGTACGCCGTCAAACAGGTAGGGAAGATACGGAAGACAGCAGCGCGGAAACGGGAGTACCACGTTTTGTTCATGGTCATCACCACGGTGGTGTGTTACCTGCTGTGCTGGATGCCGTACGGTGTCGTGGCCATGATGGCTACATTTGGACGGCCAGGAATCATCTCACCTGTGGCCAGCGTCGTCCCATCTCTCCTCGCCAAGAGCAGCACGGTCATCAACCCACTCATATACATCCTGATGAACAAACAGTTCTACAGGTGCTTCTGCATCTTGTTCTGCTGCCAGAGGAGTTCGATGCAGAACGGCAATTCCTCCATGCCCTCCAAGACCACGGTCATCCAGCTCAACCGTAGAGTCCACAATAACACCGTCGCCTGCACCGCTCAGATCTCCACCGGCATACACAACCACGACTGCAGCACCGCCACAGAGAGAACCAACCCCCCAGAGGTCACCACCTAACCTGAGCCCAGCTAAACCTTGCCTTGCTTCCTGTGCTTCTTTCTTTTGCCGTTGCAACAGTGAATtgttaattagaaaaaaaaaagtggagtcaACAACGCATTTCATTGCTGATTACTGGGGTCTTTTTGCTGCGTACTTTGAGTGATCTCACTTTGCagcaaaaaacccaaacaacGACATGCACTTAAAAATACTACAGAACAAGGTGAAGTGACGAAGAAAAGAAAGTACACAGCAAGAAGTCTGAAGCATAAGAGCATTATATTAACGCTTCAGATGATGAGGTTTTAAGCACATAGTTCAACGACAAAGACTTCAGATCAGTTTTTCACCAAACTAATCCATAAACTCtaaatgatgttcttttatTACAACCATTTATAATACTTTCTCAACATTTATAACAAAAGTGTCCTGACAGAAAGCGCAGGAGGAGATGGAAGTTATGTtttcagagaagaaaaagacTATATTTAATGTCAATATTTGTATCATCTTTTACAAAAGTATACACACACTACAGTTAAAATGCTTGGAATtagtagaaaaaacaaaacaaaaaaaacttttattcagtaaaggatacattaaattaagTGATGttgaagacatttaaaaatgttacaaaatatattttacatttccattctttttctggctgctaaatatttcagctttgaaatcatGGGAATTAATTAgcctacattaaaaaaaaaaaaaaaggtgaaccCCAAACATCTGAATTATATTGTAACCTTTGTATagtatttgcaaaaatgttttgcacaaaatatgAAACTTGCATTTTTTCGatgattttaaattcttaatcTGATAATGTGCAAagtatttaaatcaattatccAAGTATTTGCTGggttatattttcatttatattcatataattttgtcttttaaatagtttgaaatGATAAATATCATCCTGTTCATGTTTCGTTTGACTTGGTTAAGATTACTGTGCATGGTATTATTTAAAGggatttttaaatgtcaaaacttttttatgaaacaaatcGTCATTCGTTTAGTCTTCAAAAATCATAGTTATCTCTTTGTTGAAGAACTAGTTTTAAGCACACAGATATTGCACAAGcagattttcttttgtgttaatattCATCATACAAACTCTTAAGAAAAAGGTGGTTGAGAAAACAGTTAACATGCATATACTACTGAGGTAATTtcacaaattatatattatgtttaaaacgAGACTTGGTTCTTGGCTAGAACAACACTTAACCATTATTTGTTACCAAAGAAAGAGCACGGTTCCAATATGCCTCAAACGGTCCCATTCCTCTCAGTTATGTTCCTTATGATGAGTTAGCTTGCTATCTGAGCCCATATCACCGATTTATGGAAAATTATTTTACCATGAAGTAGTGGCACACTGATCCAGATGTGACAACGGCAGCGTTTCAGGAACTGCGCAATAAGAAAGACCCTATTTCCACAGGGGGAACCTTCATCCTAAAACACAGACATGAACAATTCACCTGGGATCCAGAAGAAGGAATTCTCAGAGGGATCCCCCCTCCcaaaaaaaaggaggaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggactttggCTTTTGAAATGTGCTGAATGTATGCCTGGCGCTGAATAGTGTCTCTAAGGACTCGATGACACTGCTCAAACTCTTCAACTTTCACCAGAATGGACTGTGTATAAAGTGCCAAACACACCAATGAGAACAATGTATCGGTTTATttgtaaaagttaaaaagaaatgaccTGTAATGACATTACAAACTGGACTGAATTTGTTGTGCCATTTGTTGTTTAAGTATAAAAGCAGATCAATCTATGAATAGAGCACCGCAGATCGATCTCGGAAATCAATGAGTTATAAGTAATGTGTGTAAcgttttctgtgatttttagaAATGGGGGAGACATAAACAGCCTTAAATGTC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101058 lncRNA downstream 12954 6793402 ~ 6794375 (-) True G68333
XR_006251776.1 lncRNA downstream 30355 6775286 ~ 6776974 (-) True LOC122351577
TU101056 lncRNA downstream 30914 6775074 ~ 6776415 (-) False LOC122351577
TU100979 lncRNA downstream 89186 6715996 ~ 6718143 (-) True G68270
TU100974 lncRNA downstream 109436 6697686 ~ 6697893 (-) True G68266
TU101086 lncRNA upstream 50331 6882585 ~ 6882976 (-) True G68357
XR_006251826.1 lncRNA upstream 60398 6892652 ~ 6895397 (-) True LOC122351994
XR_006251860.1 lncRNA upstream 150424 6982678 ~ 7035361 (-) True LOC122352164
TU101108 lncRNA upstream 314186 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA upstream 314186 7146440 ~ 7153954 (-) False LOC122351350
XM_043249753.1 mRNA downstream 80531 6719754 ~ 6726798 (-) True si:ch73-390b10.2
XM_043248124.1 mRNA downstream 99121 6686218 ~ 6708208 (-) True LOC122351204
XM_043249750.1 mRNA downstream 208131 6501409 ~ 6599198 (-) True LOC122352171
XM_043248918.1 mRNA downstream 309125 6492609 ~ 6498204 (-) True abhd13
XM_043248919.1 mRNA downstream 314973 6487238 ~ 6492356 (-) True tnfsf13b
XM_043249722.1 mRNA upstream 51234 6883488 ~ 6888374 (-) True ecrg4a
XM_043249721.1 mRNA upstream 51234 6883488 ~ 6888101 (-) False ecrg4a
XM_043249561.1 mRNA upstream 64223 6896477 ~ 6943442 (-) False nck2a
XM_043249562.1 mRNA upstream 64223 6896477 ~ 6943442 (-) True nck2a
XM_043249559.1 mRNA upstream 64223 6896477 ~ 6943439 (-) False nck2a
TU100887 other downstream 546260 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 707446 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 763404 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 884509 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1437740 5349955 ~ 5369589 (-) False LOC122351925
TU101110 other upstream 238731 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 1182195 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1246882 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1508689 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 3075934 9908188 ~ 9910178 (-) True LOC122351483

Expression Profile