RNA id: XM_043248739.1


Basic Information

Item Value
RNA id XM_043248739.1
length 3551
RNA type mRNA
GC content 0.51
exon number 16
gene id ifih1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 26082148 ~ 26104816 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAACCGAAAGCAAACAGGTCCGGGGAAATAGATCACGGGACGGTCGGCTCTGATAAACGGGGATCGGTGAACTCCGTCAGAAGTCGTGCTGATCTTCACAGCGGTATCTCACGATCATGAGCAGCGACCAGGACGCGGAGACGCGGCACATTCTGGACTGTTTCCGGGACAGACTGAAGCGACTCATCCAGGTCGAGCCGCTCCTGGACCTGCTGCATTTCCTCGAGCAGGACCGGAAGGACCGGATCAAAGCCAGGTTACGCGAGGAGGGGAACGCGAGCGCCGCGGCTCTTCTGATCGACGAGATCATTCGGTCTCAAAACTACGAGCGGGGATGGTCGAGAGAGCTGGTCGCCGCGCTGGAGACCGTCGGCTGCGGGCACGCCGCGAAGTACGTGTTGAACAGCCCCCCGGAGCCCGCGGAGGAGACCGAGAACGACAGCTGCGTGCGGCTCATCGACCTCCTGCAGCTGACGCTCGTCGACATGAAGACCGCGGACGTGTGCGTGCGGTGCCGCGAGCTCGAGCTCCTGACGCGCGAGGACCTGGAGAACATTATGAAACTCACTGAGAACCGGGGGAACATCGGGGGCGCTCGGCTGCTGCTCAAGCGGCTGGTGAAAAACGAAGCGGGCTGGTTTTCCAGATTCCTGCAGGCTCTGGAGGAGACGGAGCACCACGAGCTGGCGCGGGAGCTGCGGGGAGAGCCGTGCAACGAGGACGaggtCATGTCAGTGGAGTCTGTTGAGGAGCCCGCCGCAACGGACGCTAACATGAGCGGCTCTGGGCCCTTTCTCCCTCCCGTTCTGTCAGAGGATCTGGACAGCGGCGGTCTGGGTGCATGTGTCGACAATGAAGaGGTCGACATGTACAAAGAAGGAGAGGAAGAAGATCTCACAGAGGATGATGATCCTGCAGaGAAACGCAAGAGGGATATTATACTGCGCGACTATCAGATGGAGGTGGCGAGACCAGCtctagaggaaaaaaacatcatcatctgCCTGCCTACAGGAAGCGGGAAAACCAGAGTTGCTGTGTATATCACTGAGAAACATTTGGAGAAGAGGAAGCAGATGGGACGACCGGGGAAAGTTGTCGTTTTGGTCAACAAGGTTCCCCTGGTCGAGCAGCACTACAAGGCCGAGTTCGGACGCTTCCTGAAGCACCAGTACTCGGTGGAGCGGGTCAGCGGAGCCTCGCAGCTCAAAATCTCCTTCCCGCAAATCATCGAGCAAAACGACATCATCATCTGCACCGCACAGATCCTGGAAAACTCTCTAGCCAAAGCCAAGAACGGCGACGAGGACGGCATCAAACTATCACAGTTCACTCTGATGGTTATTGACGAATGCCATCACACGAAGAAGGGCGGCGTGTACAACCACATCATGATTCGCTACCTCAAACAGAAACATCAGAACCAGCTACTGAAGAAGCAGGGGAAAAGCCCAGTTGCGTTGCCTCAGATCCTGGGTCTGACGGCCTCACCTGGTGTGGGAGGAGCCATGAGCCAGCAGCGAGCCGAGGAGCACATTCTCCAGATCTGTGCAAACTTGGACGCCTTCACgataaaaacaaagactttCGAAGAGGAGGAGGCCAAAACACCATTCAAAAGGATTGCAAGAGCAGAAGAGAGGAAGGAGGACCCCTTTGGAGACGTGATCAAGAAGATAATGGATGAAATCCACGAGCACGCGGACCTGAAGCCCCTCTGTGAGCCCGGCACGCAAAACTACGAGCAGTGGGTCGTCCAGAAAGAGCAGAACGCTGCTAAGGAGGAGAATCAGAAAGTGCGTGTGTGCGCCGAACATCTCCGTCAATACAACGAGGCTCTTTATCAGAGCAACACCATACGTATGTCAGACGCCTTCCACTTCCTCGACAAATATCACAACGAAGAGCTCAAGACCAAATCCAGCCCCGATGAGGAAGGCACTGTTACAATCACAGACACTGAGAGATTCCTCTTCACTTTGTTCAAAGAGAATAAGGCAAAACTGCAGGAGCTGATGGGAAAGCCTCAGTATGAAAACAACAATCTGGCCCAGCTGAAAACCAACATCCTGAAGGAATTCAGCAcaagagagcgagcgagaggcATCATTTTCACCCGGACCCGCCTCAGCGCCATCGCTCTCTGCCAGTGGATCCAAGAAAACCCTAAGTTTGATGAAGTGGGAGTCAGCGCCAGCTATCTGATCGGCGGAGGAGACCAGAGCGTGGTCAAACCCATGACCGCTGCGGAGCAGAAGGATGTGCTGAACAAGTTTCGAGAAGGGCAGATCAATCTGCTCATAGCCACCACCGTAGCAGAAGAGGGTTTGGACATCGCCGAATGTAATTTCGTCATACGTTACTGCCTTGTGACCAATGAGATCGCCATGATTCAGGCCCGTGGTCGAGGAAGAGCGGAGGACAGCAGTTACACGCTGGTGGCCGAGGCAGGATCTGGggtggcagagagagagagcgttaACGAATACCGGGAGAAAATGATGAGCAAAGCCATCGCCAAAGTGTGCGAGATGAATCGAGCCGACTACGAGAAGAAAATCAGAGAGTTTCAGATGCAGGCCATAATGGAGGAGAAGGTgaagataaaaaagaaacagcagaAGGGAATGATGAAGGAGCCGCCGTCTAAAATCAGCCTGAGCTGCAGGCagtgcagtgtgtttgtgtgctccGGAGAAGACATTGAGAAGATCGAGAACATGCACCATGTCAACGTCACTCCGCAGTTTAGTGAGCTGTTTACAGTCCGAGAGAATACATCTCTACAGGAGCGACTCCTGGACTATGAGACCAATGGGGTCATCGCCTGCAAAAAATGCGGACAGCAGTGGGGCTCAATGATGCTGTATAAGAGCATCGAGTGTCCCTGCCTCCACATCAAGAACTTTGTGGTCACGTACGGCTCCAAGAAGAAGACATTCAGCAAATGGAGCGAGTTGGCCATAAAGTTCCCGGCGTTTGACTACACTCAACACGCCGATCTCCTCGCGGAGGACTCgggggaagaagaagaagacatgGAAACTGATTGAAAATAAAGGAGCGATGATATTGAAGCTGATCTCTATTCTGTTCTACTGAAAGCACTTCTCAGCATCTATCTCAAGTGACATTTTTCACATTCTGATTCTAATGCCGTTTTTGCCTGCAACGgcctaaaacaaataaaacgttgacatttatttcacaattcagatttttttgctaACTTGAAACTTCAAGTTTAgactaataatgaataaaatgtcttGCAATATCTTGCAAATGGTTATTAACATTCACAATTTTCAAGCTTTATCGTCTGAAAATTCTGATATTCTTTAAAATCATGAACAGATTGTGAGATAAAATGTGGTAATTTACCTTtctggttgttttttgtttcatttttttatagatgTTGGAAGAAGGTCTTGTCTTGTAAACTACATTCACTCAAACTGCAttgaattgatttaaataaatgttttctactGTAAAAGGTCATGCATGTGGAAGCACATTAAAGCTGTACAGTCTGTGACAAATA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K12647 IFIH1, MDA5; interferon-induced helicase C domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108588 lncRNA downstream 19316 26054867 ~ 26062832 (-) True G73385
TU108585 lncRNA downstream 21030 26056491 ~ 26061118 (-) False G73385
TU108574 lncRNA downstream 36735 26044164 ~ 26045413 (-) True G73379
TU108474 lncRNA downstream 116254 25945401 ~ 25965894 (-) True G73308
TU108534 lncRNA downstream 219736 25860328 ~ 25862412 (-) True G73351
TU108631 lncRNA upstream 2079 26106895 ~ 26107406 (-) False LOC122351579
TU108650 lncRNA upstream 167871 26272687 ~ 26274866 (-) False fign
XM_043248248.1 mRNA downstream 1361 26068238 ~ 26080787 (-) True LOC122351282
XM_043249390.1 mRNA downstream 15135 26065212 ~ 26067013 (-) True gcgb
XM_043249521.1 mRNA downstream 162452 25862753 ~ 25919696 (-) True LOC122352035
XM_043249028.1 mRNA downstream 228845 25830978 ~ 25853303 (-) True LOC122351758
XM_043249181.1 mRNA downstream 619299 25459895 ~ 25462849 (-) True LOC122351834
XM_043248741.1 mRNA upstream 1841 26106657 ~ 26187631 (-) True LOC122351579
XM_043248151.1 mRNA upstream 167560 26272376 ~ 26331126 (-) True fign
XM_043248150.1 mRNA upstream 167560 26272376 ~ 26330226 (-) False fign
TU108498 other downstream 228854 25847817 ~ 25853294 (-) False LOC122351758
TU108525 other downstream 249792 25794083 ~ 25832356 (-) False LOC122351758
TU108526 other downstream 262937 25794083 ~ 25819211 (-) False LOC122351758
TU108524 other downstream 289092 25790517 ~ 25793056 (-) True G73347
TU108462 other downstream 623406 25456414 ~ 25458742 (-) True G73300

Expression Profile