RNA id: XM_043248744.1


Basic Information

Item Value
RNA id XM_043248744.1
length 2955
RNA type mRNA
GC content 0.47
exon number 3
gene id si:ch211-67e16.4
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7938052 ~ 7947805 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTGATTCCTGCTCTGTTTCACTGTTGTCATTGCACGGCCAATGGCGGACAGCGCCCGAGCGTTTATCTGAAAAACGTAGGTTTCGCGCAAACATACTCGACTGTCGCTCGGTGATTTGAAGCGTTCGGATCGCGCGCGTGTTTTTGGCCCGTCAGCATGGATGTGAATCTGACCATCTCTCTGATGCGGGGCCAGATGGGCGCTGTTATTGAGAAAGCCGTGAACGTCGCGGTGGAGACCGTGTTAGGAGAGATGATCCGGGTGGTCGGGCTCAAATTCGAGGAGATTAAACGGGAGATGACCGCTAAAGAGAAGGAGAACGAGAACATCAGGAGGATGCTGGAGACGTCCCGCTGTCAGATGAAAACTATGCGCAAGTACATTAGCGTCCTGTCTGCTAAAGACCCCAACCATAGACTGTATCAGGGGGATGGAGACATGGCAACGACATCCACAGGGATGCACTGCAGAAGAGGGCAGACGAGCAACTCCCCAAACCCCTGTCCCAGACCCAGAGTCTCCGAGCCGGCCCCTGTAGCTGGACCCTCATGGGTGAGACAGCAGATGCTCATGTCCAAAGAAACGTTAAGAAGTGAGAATCACATTGCTGAGGTCCATATTGAAGAGACTCATGGATCATCGGTGCATAAAGTGGAGAACTCAAGCTCTCATCTGGTGGACAGTCAGGCGCTTCTATCTGAGACCAGTGATCCGATCTGGGGTCAGAACCCTCTGGTCTCTGTGGAGACTGGACACACAGACATGCCGGACAGCAGCGTCCTCTCTGCACCCATGATGGCAGATGAAACCGTGTCATCCCAAACAACAAGCACAGTGACCTTTGGAGCACCATCGCTTAAAATCAAACAGGAGGAGGCGGAGGTTGAGATAGTCTGTGTGAAGGATGAACCCGCAGAAGCTGGCAGCATACCTAGATTTGAATATTCCAACGCTGATCTTCACCAGCCAGTGGGAGAACCAGAGCTCGGGGTCTCTCTAGATCTACCCGCGTCATTTCAAGCTCTCCAGAGTCCAAGCACTTCAGCGGACCTTGCAATCCCAGCATTCATCAGTGTGGACCCATCTACCTATGACGACTCTCAGCTGTCGGTGGCAGGGGTCCAAAAGCAGGTGCGTCCCAGACGTAAGGACCTGAATCTGTATGAAGAGTATAAACGCAGCCGGACTCTGAGAGGCCGCAACGCGAGCCGAGGCCGCAGTACAAACCGACGGCGCGAGCTGGAGCAGACTCTACCGCAGGCTCTGCTCGCAGACTTGGTAAGGGAACGAAGGGAAAAGACTCGGCTTCGAGTGGCCCGCTGGCGAGCCAAACGCAAGTTACAAGCCTGTCTGATGGCCTCGCAGGCCGCGCAGTTTAGCGGCGCCCCGGTGCAGAGTTCGCCCGCCCAGCGCGGCGGCCTGATCTCCACCCGCAGGCGAGGAGGAGCGATGGCGCCGCGCGGCGGGCTCGGAATGAGAAGGGGACTGTCCGAGGCTGGCACATATAACCTGCTGCTGCAGCTCGGGCCCAGTTCTGCTCAGTCAGCTGCGGCATGCGGAATTAATGAGGGTCTGATGGCGCCTGGGCCCTCGGCGCTATCACAGCACAGAGCCAACGCGCCGAGATCAACGTATCAGTGACGAAGCGTTCACCAAGTAATAATTTCACCTACACTGATCCGTGTAAACCTCATACACAACAATTGTGCTATTCAAAAACACACGTTTGCAAACCCAACCAACTGTTTGGTTATTTAgtaacattaaactgaaattcAACTGAGCTGAATAGCGTAAGCTTAAAGGAAGAAAAGTGTTTTTCGACAATATTGTAAAATCGCTGCACACAGCAGAAACTGATATTCGTCCTAGAAAACAGCGGTTTCGGTAGCTCACGtgcttgaaatgtttttcatctGTATGTTTGACCGCATTTTTCGGGGTGGAGTTGAAATACTTATTTGGTTCGTTCATTACAATATACCTTCACGTTCATTTTTGTAGCCTGAATGTTTCATTGGCACTGTTGGCAGTAACTACGCTGACATTTGTATGCCAGTGCTTTCTGAATGAGCGCGCATTGCAAAATTGCTGCGTAAGCTGATACGTGCGTTTGGTTTTGAGCAGGCAAATGTGGTTTAACAGAAAAAGCGGTGAATGCTGCTTATAGTTTCTGGAAATTAGTCTCTGTTTTGGTGGCTGATGTAATGGTATGTTTTGGTATGAAAAGGTATGGAATATTTTTCTGATAAAATGCTCAAGAGTAGAGTCACCATGTCAGTAATGGGGAAATCTCCGTATCAGTTTTGGTTATAGATTCATTTACAgctattagttttgtttttttgtttgttaaaaccACAGTGACAGTGCATATACGCTATTGTGACAGTTTCTTCCATAATACCACAATACAAGAGCCTGAGCTTTACGGATCAAAAGGCACGTTAACATTTCAGAAAAGTTATACATTTCTGACTTAATAAAGTATTACCCACGCTACAgttaaattcagtttaattaGCATTCTGAGAAATGACAAGGAATTTCAATCAGCTGAGAATAAAACACTATCATTTTTAGATACACAGTATGTTTCACAAAGACGgtgaataaatgttattttaacccTTTGCAACAATCacaaatttacattacatggaCTCATTGGGGTTGTGGTTGCTTGTTTTATGTCACTGTATTTACACAACTGATCATTTTTGAGTTATTCTGTCTTAAAGTCACttaacaatcatttatttagtttgaaagcTCTACAGTAGAACAAAAGTTCAACGGTTTACAGTAGGTGGGATGCGATTTATAAACATtagttttttacagttttcatgTGCTATGTTCagtgttttatgttgtttgaaGATGAATAAACATGTAATGTCGTAAGTATTACATTTGTTGgtgtgaattaaataaaagatgctAAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101355 lncRNA downstream 116163 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 119220 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 556544 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 596558 7327829 ~ 7341494 (-) True G68473
TU101111 lncRNA downstream 784098 7146440 ~ 7153954 (-) False LOC122351350
XR_006251831.1 lncRNA upstream 523060 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 813968 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 846058 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 854582 8802385 ~ 8805405 (-) True G68830
TU101792 lncRNA upstream 868717 8816520 ~ 8817618 (-) True G68839
XM_043249596.1 mRNA downstream 45644 7881178 ~ 7892408 (-) False si:ch211-67e16.11
XM_043249595.1 mRNA downstream 45644 7881178 ~ 7892408 (-) True si:ch211-67e16.11
XM_043249676.1 mRNA downstream 588636 7347110 ~ 7349416 (-) True LOC122352131
XM_043249674.1 mRNA downstream 588730 7347110 ~ 7349322 (-) False LOC122352131
XM_043248156.1 mRNA downstream 591766 7343107 ~ 7346286 (-) True tuba8l3
XM_043249602.1 mRNA upstream 577 7948380 ~ 7952282 (-) False si:ch211-67e16.3
XM_043249600.1 mRNA upstream 577 7948380 ~ 7952001 (-) True si:ch211-67e16.3
XM_043249603.1 mRNA upstream 7286 7955089 ~ 7957338 (-) True LOC122352095
XM_043248835.1 mRNA upstream 68958 8016761 ~ 8024672 (-) True LOC122351623
XM_043249157.1 mRNA upstream 78426 8026229 ~ 8055168 (-) False abi2a
TU101110 other downstream 789432 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1676983 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1838169 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1894127 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 2015232 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 66646 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 131333 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 393140 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 1960385 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2485704 10433507 ~ 10441872 (-) False trim13

Expression Profile