RNA id: XM_043248766.1


Basic Information

Item Value
RNA id XM_043248766.1
length 8451
RNA type mRNA
GC content 0.46
exon number 40
gene id dop1b
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16122028 ~ 16144607 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACACAAATGAACTGTTTGGTGGAAATCAGCTGAGCGATTCAATTCTTGCTGGCTAGAggtttgaatattaatatgGCGTATCTGCCTTCTCCTGCGCTcgccttttattgtttttaaactgtCGATTTATTCCGAGTCGTGAGGTTATTTGGCACGAGACCCTGTGATCTGTCGACCATCCTGTTTTGCTGCAGTGAGTGGAGATTGTTCACAATATGCGCTGCATGAATTGACTACTGGCGATTATACATGATATTTACATTAACGTTCagaagtttgagGCAGATGCTAAGCATGCTGGGACGTGACTGAGACATGATGGATCCCGAGGAAGCCGAGCTTCAGAATGACTACCGCTATCGTAGTTACGCAGCTGTCATTGAGAAGGCGCTGCGGAACTTTGAATCATCTAGTGAATGGGCCGATCTCATCTCCTCACTAGGAAAACTCAACAAGGCTCTTCAGAGTAATCTAAAGTATTCTCTGTTACCACGGCGGCTGATCATCGGGAAGCGTCTGGCTCAATGTTTGCATCCTGCCCTCCCCAGCGGCGTCCATCTCAAAGCACTTGAGACCTATGaagtcattttcaaaatcattGGCACAAAATGGCTCGCCAAGGATCTCTTCATATACAGCTCAGGACTATTCCCGTTGCTGGGTCACGCAGCGATGTCTGTGAAGCCAGTTCTGTTGACGCTGTATGAGCGCTACTTCCTGCCTCTTCAGAGAGCGCTGTTACCCAGCCTACAGGCTTTTATCATGGGCCTACTGCCAGGGCTGGAAGAGGGCGCGGAGGTCTATGAGAGGACGGACGCGTTGCTTGTAAAGCTCTCCGTGTTGGTGGGTCAGTCTGTGTTTTATGGGTCGTTGTGGGGTTCAGTGCTTATATGTCCGCTGGTACGCCTCCCAGCATCCCTCTTCATCGTCGCACACTTTGACCACTCAGTAACTGCTCGAGAACAGAAGTATATGCTCGGGACAGACCACAAACTAGTGGTAAAAGCTGTTTGTCTTGCCTTACAAGACTCTAACGTTCTGGTCCAAAGAAACATGCTGGAAATCCTTCTCTACTTCTTCCCCTTCACTACCTGCCAGGATCCTGAGGAAAGCGCCATTCCACTAAATCAAGACGAGATGATCAGTGTGGTGTCTGCTGCCTCACTCACCCTGCTCAGGAGAGATATGTCTCTGAATCGACGCCTCTATGCATGGATGCTCGGTTTAGACATCAAAGGAGGAATGGTGGCTGCAGACTCCAGTCGCTTTAACACTGTGGAGGAATACTCTGCATTCTACTTCAGTACACACTCCAGAGAATCACTGGTGCAGGCTGTGGTGAATATTCTGAAACAGAAAGATATAGAGGCCAACCCAGACAATCTCATAGAGTACCTCAGACCATTTCGCATCATCATTAGCCTGCTGGACAAATCTGAAATAGGGCCATTGGTGTTGTCTGATATATTGCTAGAGGTGGTCAGAGCTTTTTATAGCTACTGTAAAGTGATGTTGGGAGAGGACAATCTCAGCTCAAGCCTCAGCGGCAGCCAACTCAACAGTAAAATCAAGGAGAACAAAAACGCCTCTGAGATCATAAAGACCGTCAATATGCTTGTGAGTGCAATGAGCAGCAATTATCTCTGGGACTACATGAcaagacattttcaaatttgTCTGAGCTCACTGAGTGATCCAGCCAGGAATTATCCATCTAAAGACTGGAGTAGCCCTCCCTCAGTGACTGAGCTCTCAACGCTCATTATCTTCCTGTTGGATGTTATTCCTTTGGAACTCTATGCAGAGATTCAAACGCAATATCTACCACAGATGTTGGGCAGCATGCTGCAATCACTACGTAGTCACATGACATCCCTTAGCCTACAGGAGCTCACACTTGCCATGAGAGCATGTTTTAAAGTGCTCAGTAAGATCCAGATGCCTGTGGCTTATATGGACATGGAGGCCGAGTCACAGACGCAAGATTTGGAGCAAACACAGATTGTGATGACAGGCAACACCAAAGTCAAGGAAAGTGATCAGGTGAATGGTAACCATGAAGACAGCTTCAGTGAGGGTGGTCTAAATGGAGAGGAGACACAAGAGGCAGAACCAGGCGTAGCTCCATACCCTCCTTTACGCTCTGAAGACAGTGGATTAGGCCTGAGTGCATCTCCATCTGAACAGCACCTCCTACCAGGCCATAATGGAGCAGATGCTGCTTCTGATGTGAACCCTGAAGCAGAGGATGtgtggagaagaggaggaactATAGAAAACATGTCCAAATGTGTGCAGGACATACTGGCATCTGTGATCACAAGGCATTTGTTAGATGTCATGGAtccagagaaaaagaaacaggaagAATTAAATCAGCTAAATCCTAATGCTTCTCCTAGAGGCAGTAAACGTTCTCCATCGAAACGCAAAGGCAGTCGAGACTTGGGTTTAATCAAAGACAGACTTGCTGAGTTCTTTAACCCTAGTAAACTGAGGATCCATGCCCTTCATGGGTCTTCTAGGGATGGGGGTAAAGACCACAGACCAGCCGAGCTGGAGTGGATGGGAAATTTCCAGTCAAAGAGCAAGGGGGAGATACCGGAGTCCTGCCGCCAGTCCTTCACTGTGGTCTGCCAGCTTCTACTGGAATGCACAACATTTCCCATCTATTTTACTGAGGAAGAGAACCAAGACCTACACACATCTATGTTCAACAAGACAGGGATCGAGGGAACACTTCCTGACTGGCTGAGGTCCTTGATGACTCTGTGTTGCCTGACGAAAGATTACCAGGTGCAACATGTTGCAATCTCCTCTTTGCTGGAGCTGATCAATCACTCTCAGTCTTTAGCCCTCGTCATTCAGGATAAAAATCAACGTTATAAGAACTCTGATGCAAACCCACTCAGCGGACAGCTGCAAATGGTCACCCTGCCTCCCATCTACCCAGCTGTTCTTAAAACTCTGGAGGATTCCACAGACTTTTACTTGCGTGTATCTCAGGTTTTATGGGCTCAGCTGGACACGGAGCGTAGAGAGCATCACGTATCTTGTGTGGAGCTCTTTTATCGGCTTCACTGCTTAGCTCCTTCTGCATCCATCTGCGAGGACATAGTTTGCTTGGGTTTACTCAGTGGCGATAAGgTTGTGTGTCTGGAGGCGCTCCACAGGTTCTCAGTTTTGTGGCACCTGACACGAGAGATCCAGACCAATCGCAGCACTTCTCTCAACCGCTCCTTTGACAAGTCTTTGTTTGTGGTACTAGATAGTTTGAACAATCAGGATGGTAGTGTCAGTGCTGCAGCACAGAACTGGTTGGTGCGGGCTCTTTCCCTCAATGATGTGGTCCGTATCTTGGAACCAGTGCTGCTCTTACTGTTGGACCCGAGAACACAGAGATCACCCATACAAACCATCAAACAGAATCTCTCTGTTGGTAATTTAAAGGCACTGACCTGGAGGGACAGATCCATCACAAAAAGTGTTGGTGACAACATTACTCCCGGTTGCCAAACAGATGAAAGCCTTGTCAAGCGTATCACCATAGTGGACCGTGAAGCACTGTGGGCAGAGTTGGAACGAGATCCAGAACTAACGCCTCCAGACTCCCCAACAATATCCCGGAGTGAGAGTGAAGAGACTGAgggagaggatgaagaagaagaggaagaagaggaaagTGAACACACTGAATCTGCAGACACAAGTGGTGCTCAGAACTCCACTGAAAACTCCAGCTCAAGCTCTGCCCCTTACTTGCAGCGCCATGATGATGGTAGTGTAGAGTACGAGGGTGTGGCCAATGGCCTGCAGAGGGTGGATTCAGAACGCACACAGGTTTCAGATTCGCTCTCaagtgatgaagatgatgggCAGTTGGAGGCGATGGCCAAGTCCCGGTTGCTCAAGCGTCAGCGGGAGAAACGTGAAGCAGTGGATTCACTATTCCGGCATGTTCTTCTCTATAAGCAACAGTATGAGAGCAGCCGAATTCTCTATGCATTTACTATTTTAGACACCATCCTCCGGACTAGTGCAGGGCCTTTTGTAGAAGCTCTCTCCAGTACATCTCTGGACTGCAGCTCCATTGCCCATCTCAATCTCATCCAGAACCTTCTGCAGAGGCACCGTCAGGCTCAGGATGGTGGCAGCTTTTATGGCCGATTGCAGACCTCAACTCCACCAAGTGCCACTCCTGACCCATCTCAGCCAGCATCTTCTCCTCTCCATTCACCATCTTCTCCTTCCTCTCCACCAACTCTTCTGCTAGAGTTACTCACCTGCCTGTGTATGCGTTATCTCCGCTCTCACTATCCCTCCTATGCTAGCGTTCCCACCCGCCAACTCCAGGCAAATCGGGAGGTCCAGGTGAAAAGTGTGGAGGTGCTAACAGAGTTGATGATCCAGTTGGTGAGGGTGGCCCAGCAAGTTCAAATCGGGGAAGCAAAGGGAACTGCTAGCTTGGAGGCAGTGCGCAACCTTCTTTGGGGCTACAAGGTGCAGCAGTATGTCCTTCTAACACTTTCCGCCTCCATGTATGTCTGCCAGCGTGCTGATCGGCCTGAACAGCACAAATTACCTGAAGAAGACCAAGGAGGAGATGAAGGGGAGATCTCAGAAGAGAGCCTGATCAACTTCGGCCGGGATGGGATCTGGGCTGAGCATCCACTTCAAATTGCCCTACTGAAGCTTCTAAAAGTTCTTATTGTATTGGAACATCACGTGTGTCCACCACACACCAAAACACAAGATCATGATCAAAGCAATTCCAACCAACAGCGACGTGCAGAACCACCTTCTTCAGCCTTGGCTCGAGAGTGGCAAACAGCTGTTATGTTCCAGCAGTCCATCAAAGCAGTGCGTTACATAGCCAGTCAGCCTATCACCACTCAGGGCATGTTTGTGTCGGCAGCGGCCCGAGCTTTGCACCCACAGTATGGCTGTGCCATGCACCCAGCCTGGGTGACTCTGCTATGTGAAGTGTTGCCATATTTAGGACGATCACTGGCCATCATTGTATCACCCATAATTGCCCAGATCTGCAGGAACTTGGATGAGCTTGTTAAACAGCACGAGCATGATGGAATCAAAGCTTCACACAGTGGTACCCTAAAGAGGGAGAACATAGCCCCTGACTATCCTCTGACATTACTGGAAGGACTGACCACTATCACACACTACTGTCTTCTAGACCACAAGAAAacTGCTGGCTGTGATATTCCAGACCTGCGAAATGCTAGCAATGCCATTCTAGAGGAGTTTCCACACATGATTAGCAGCATGGCCTTACTCTGGGGTGTGGTCAAAGGTTGTGACTCCGCCCACGGCAGCAAAGCCTCTCCCACCTCTGTGTATTTTAAAGGCACAAAGATTTTGAGGCAAAAGGTTCTGGAGTTCTTGATGCCACTGACTCAGCAGTTTGGGATGCAGGTCATGGCCTCCGTGGCAGCTGTATGGAGTAGCAGGAAGTGTCGCAAAAGACGATCCAGAAACAAGATTTTACCAGATGCTAGTGATTCTCAAATGACCTTAGTGGATCTAGTGAAGGCACTAAACACACTCCGTACAGACACCATATTGCAGCTCATCAGAGAGGTGGTAAAGAAACCCCATCAGATCAAAGGAGACCAGAAAACTACATTAGTTGACATTCCAATGCTACAGTTCAGCTACATCTACGTTCAAAGTCTCACCGCTCAAGCTCTTCAGGAGAACATCAATCCTCTCCTCTGTCTGCTGAGAGAATCTGTCCAGCTTAATCTTGCCCCCCCTGGACACTTCTTGCTCCTcggaatTCTTAATGACTGTGTAAATAGACTTCCCAATATCGACAACAAGAGGGATACTAAAGAACTGCAGGAAGTGAGTCAGCGTATATTAGAAGCGGTGGGAGCTGTGGCTGGCTCGTCTCTTGAGCAGACTAGCTGGCTCAGTCGCAACCTGGAAGTGAAGCCCCAGCCTCAAGTCTGTCTTCAGGGAGATGAAGATGACCACGATGGCAATGAGTTTGAGGAGTGTGCAGGCCAGGGCAGTGCTATGGTGTCATCCTCAGCACCCTCTGTACTGAGTGTACAAGCTCTTGTTCTGCTTGCAGAGGTTCTGGCTCCTCTTTTGGACATGGTCTATCGCAGTGATGAGAAGGAGAAAGCCGTGCCTCTTATTTCCCGTCTTATGTATTACGTTTTTCCCTATTTAAAAAATCACAGTGTCTATAATGTGCCCAGTTTCTGTGCGGGTGCTCAGTTGTTGAGCAGTCTGAGTGGATATGCCTACACTAAGCGAGCGTGGAAGAAAGAGGTACTGGAACTCTTCATGGACCCAATGTTTTTCACAATGGAGTCATCGTGTTCCTGCCATTGGAGATCTATCATAGACCACCTTCTGACTCATGAGAAGACAATGTTCAAAGACTTGATGAGCATGCAGAGCAGTTCTTTAAAGCTCTTCAACAGCGCTGAGCAGAAGCCTATGTTACTGAAAAGACAGGCTTTTGCCATGTTTAGTGGAGAGAATGACCAGTACCACTTCTATTTGCCTCTCATACAAGAGCGTCTAACAGAGAACCTGCGTGTGGGACAGACCCCTTTGGTGTCAGCTCAGATGTTCCTCATGTTCCGTGTTCTTCTTTTGAGGATCTCACCACAACATCTCACCTCTCTCTGGCCAATCATGGTCACTGAACTGatacgCATTTTTAACCGCCTTGAGAAGACACTACTGGATGATAAAGTTTTAAAGAGTAAATTGCGGGGTGGCAATGACAAGAATGGTCTACTCTTCCCTCAGGCAGAGCTGGACATGTACCTGTCAGCCTGCAAGTTCCTGGACACCGCTGTGTCCTTCCCTCCTGAGCACATGCCTCTATTTCAAATgTATCGCTGGGCTTTCATTCCTGAAGTAGATGTTGAGCATTATGATGGACCAGGAAACGCTCTGCTAGAAGGCGAACAAGAGTGTAAGCCTCATATTGTTAGGATACTGGATGGAATAAACCGACGTTATGGGGAGCTAAATGGAACAGCCGGAGAGTCAAGCACAGATGGAGTTGAGTTTCCTCTTCTCACACTACGTTCTCTCTGCTCTATCGTGGATCTCGTGCCATTCTTCAGCACCCTGTGCTGCTCTTTTAATGGCTCCTCCACTTACCCCCCGCATTATGCCGCCGACTACCCACCTCCCAGCAGTGATCAGGTCATGAAACGCCTAGAGCACATCACTGAAGGAGAGTTCCTCGATGGACTGGACAGTTAGGTCATAGATCACATactaatcttaaaatattttgctcAAATTCTGTATTTgcttttgtaataaatgtaagtgGTTTCTCTTTGAAGATAAAGgtgcaattaattaattcttcGTAGCATAACAGTTTACATGAAATGTATAAAGGACCCTGCTAATTTTCATGTTGTAATCATTGTTAATGCACGTCAAGTTGTTTAAGATCTCGAATGTTATGACCGTTCTGAGTCGTACACGCTGTGAATGTATATGAtccatgtgttttattttggcttAAGACGGGTGTTCTGTTAATTCTGTGCACATTCCATTACTGTTTGTTTCTGAATGAGCCAAGTGAAAGATTATTTGACCATGTTTCATTGGTCATAATGGTCCAAACAAACAGTTCAagcatttattgtttgatttggtttttttttacttgtatgtAGGGTTTTTAGCCATTTCTTGACTTGATATCCCTTTGCagtattttctttctctgtactttcagtttttttcctgtaaGCTCATCTGTTTGTTGGAAAATACTGACATTGTCAGTTGTTTGTCATCTGATGTCCATTTGTAAGACTTTCTGTTGCATTCTGTATGTTTCTCCACTCACTTTAATTTAAAGATATGTCTTTATTCTAATTATGTAgatattgaatgtttttttttctgtgtagaGTCTGTACTCTGTTCATATTTACAGCAAATGAATTGTAATGCACATTTGTATTTCTGTACCCAAGGGAATGTTTTTGAtccatgtttgtgttttccatGATCCGTGGGCCCTCGAGGATGTTTTTATGCTGTTGCTTTCATTTTAGAGTGCATCTGATTTGACAGTTATAGTCTTAAATGTTACTGCTAGTTTACTACGTTGGCCTTTGCTTGAAGTGCctataaataaatgatctatGAAACATCTTTGCTCGTTCTGTAATTGCTATATGCAATATAGCAACTGCAAATAAGCTCAAAATAAGCAGTAACAGCAGTAAGGAGTGAATATTTTTACTGAAGTGAATTCATGGCACTCTGAAAACATAAAGACGTCTACAGCCTCACTCTATGTTATTTAGCGGTTTGTTCTCTGGAATGTCgtcaatttaatttttcttgaggaaaaatatgttaatgcttactaaagtgatttattttatgcGTATGTTCTGCACATATGAATAAAATTACCCTGAAGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251858.1 lncRNA upstream 89860 16030874 ~ 16032168 (+) True LOC122352145
TU104581 lncRNA upstream 109874 15974481 ~ 16012154 (+) True G70700
TU104601 lncRNA upstream 157364 15963820 ~ 15964664 (+) True G70715
TU104562 lncRNA upstream 220334 15899451 ~ 15901694 (+) True rabl3
TU104438 lncRNA upstream 429841 15689198 ~ 15692187 (+) True G70603
TU104651 lncRNA downstream 9616 16154223 ~ 16183683 (+) False G70743
TU104653 lncRNA downstream 22989 16167596 ~ 16183683 (+) True G70743
TU104648 lncRNA downstream 37761 16182368 ~ 16183683 (+) False G70743
TU104658 lncRNA downstream 59185 16203792 ~ 16205690 (+) True G70746
TU104666 lncRNA downstream 61713 16206320 ~ 16206691 (+) True G70753
XM_043248629.1 mRNA upstream 1750 16117372 ~ 16120278 (+) True atp5po
XM_043248374.1 mRNA upstream 34817 16085809 ~ 16087211 (+) True LOC122351352
XM_043248094.1 mRNA upstream 43437 16051417 ~ 16078591 (+) False vangl1
XM_043249655.1 mRNA downstream 7970 16152577 ~ 16180163 (+) True usp9
XM_043249656.1 mRNA downstream 7970 16152577 ~ 16180163 (+) False usp9
XM_043249660.1 mRNA downstream 7970 16152577 ~ 16180163 (+) False usp9
XM_043249661.1 mRNA downstream 7970 16152577 ~ 16180163 (+) False usp9
XM_043249657.1 mRNA downstream 7970 16152577 ~ 16180163 (+) False usp9
TU104501 other upstream 375922 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 410851 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 696989 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 2440037 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 2698202 13423714 ~ 13423826 (+) True trnal-caa
TU104743 other downstream 583900 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 601292 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 772154 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 1059190 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 1194520 17339127 ~ 17339622 (+) True G71130

Expression Profile