RNA id: XM_043248771.1


Basic Information

Item Value
RNA id XM_043248771.1
length 5743
RNA type mRNA
GC content 0.48
exon number 30
gene id kdm6a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16541232 ~ 16580313 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaACAGACAGATGCTTGAGCCAATAACGCGTTTTATGCTGGTGTTACGTAATCATAATAAATCCAGGTGAGCCAATCGCGGCAGGCGAAGATGCGGCGTAAAGTTGAGGGGTTTGTTATTTACCCTCCCCTTGAAagtttatatgaaaaaaaggaTCCCAAGACAAGGCGCGTCACGTGGTCCCCACCGAACTCAGCCATTGGCCAAAACAGCAGAGGAGGCGTTCCGACGGCGGCGGCGTGGGTTAGCTTGAGTGACACAATTATAACAAGTTTGAGCTGGCGACTAGGGGGAAGTTTGAGATATTACTAAATAACAATTTGCCGTTAAATCCTGCATTGCTCGTTCTGCATGCATTTTGGTGTACCTGCTACCCGCGACTCATTTATGTCGAGGACAATGTGAAAAAGGGGCTGTTCGGAGGAAATTATTTTCCGTCTGTTCTTTCTTTTGCGTTTAGATCCACGCAAAAAAGGTGCTCGGCTTGCGGTGCGTAAATATTTTCGCTGGAGTTTTTTGTCTATGAAATCGTGCGGAGTGTCAGTGGCCGCTGTAGctcgcgctgctgctgctgctgctgctggtgatGGTGATGAGGAAAAGAAAATGGCGGCGGGAAAAGCGAGTGAAACCGAGGAGGACTTTCCGAAGCTTACGCCGCAAGAAAGGGAGCGCTTAGCCAGCATAGACAGCACACTGTTTGGATTTCAGAGGCTTCATGAAGATGGCGCCAGAACGAAGGCCTTGCTGTTAAAGGCTGTTCGCTGCTATGACGTCTACATCTTAAAAGCTGAAGGGAAAGTGGAGCCAGAGGTGTTTTGCCAGTTAGGTCACTTCAACCTATTACTGGAAGATTATCCTAAAGCATTATCTGCATACCAGAGATACTACAGTTTACAGTCAGACTACTGGAAGaatgcTGCCTTTTTATATGGCCTTGGTTTGGTTTACTTCCATTACAATGCTTTTCACTGgGCGATTAAAGCATTTCAGGAGGTGCTTTACATTGACCCTAGTTTCTCAAGAGCCAAGGAGATCCATCTGCGGCTCGGCTTGATGTTTAAAGTCAACACAGACTACGAGTCCAGCCTCAAGCATTTTCAGCTGGCATTGATTGACTCCACGCCCTGCACTTTGTCCAAAGCTGAAATTCAGTTCCACATCGCTCATGTATATGAAATTCAGaAGAAATACCGCATCGCAAAGGAAGCTTACGAGAGTCTGTTACAAACAGAGAATCTCCCTGCGCAGGTGAAGGCAACTACGCTCCAACAATTAGGCTGGATGCATCACACGGTCGAACAGTTGGGAGATAAAGCCAACAAGAACAGCTATGCTATTCAGTGTCTGCAGAAGTCCCTAGAAGCAGACCCCAATTCGGGACAGTCTTGGTATTTCTTGGGCAGGTGCTACTCAAGTATTGGGAAGGTCCAAGATGCCTTCATATCTTACCGACAGTCTATTGACAAGTCTGAGGCCAGTGCAGATACATGGTGCTCAATTGGTGTGTTGTATCAGCAGCAGAACCAGCCGATGGATGCCCTGCAGGCATATATCTGTGCAGTGCAACTGGACCACAGCCATGCAGCCGCCTGGATGGACCTTGGAACACTCTACGAGTCTTGTAACCAGCCGCAGGATGCCATCAAGTGCTACATCAATGCCACGTGCAGCAAGTCCTGCAGTAACATCCCAGCTCTAACCGCTCGCATTAAATGCCTCCAGGCTCAGTTGTGTAATCTTCAGCAAGGTAGTTTAccaagtaaaagtaaaatgctCCCTAGTATTGAGGAGGCATGGAGCCTACCAATCCCAGCAGAGCTCACCTCCAGACAGGGAGCGctcaacacaacacaacagCAGACCACCTGCAAAGCTCATCAGAGCAATGAAGCCCAGTCCCAAATCCCAGGCCAGTCTCTTCCCCCTCATATGGTCTCGGGCCAGACTGATGACCAGTCAAGCCCAGCCAAAAGGAAGAGGACTGCAAGTCCAGCCAGGAATTCACCAGATTCCTTGGAAAATGATCCCGGTCAGCATCAAGTCCCCAACATGAGTTTAACCCCACAGAAGCTTCAGcttctggAACAGTTACGGACCAACAAGGCTAATCTGAAGCCAGTTCAGCTGCAGATGCTGGAACAGTTGGAAAAGCAGCTCAGTCTAATGCAACAGAATCAGCAGATGAGGCTGAATGCTATGGGTCAGATACGACCCAGTGTGTCCAACGGTCCTATAGCCGACCCCTCACTGCCTATGAACTCTAATTCCACATCCTCCTCTCACCATCCACACATCACTCTTTCCCGCACACTCTCCGCCCACTCACGATGCGCTGCTCAGCCAATAGCCAACGGACCTGTCCCTGCAAGCCCCGCCCCATGCACGGCTGGAACCCTGGGTAACACAGATGCCGTCTCTGTGGGCAATAATCACCTCCCAGGATCGGGGAGCAACGGAAACGTGCCTTACTTGCGGCAAAACGCACTACCTCATAACTGCACAACCCCCACCAGCAGCAGCATGGATGATGAACCGTGGAAAAGCCAACATATCAACTCCACTCAGGGGCTTCGGAAGAGTCCAGGTTCATATTCAGCAGGTCCCAATGGCGAGCAGCCTTTCTCTTCCGCTGGGACGTCCCAGCCTACCCCGGCAGCCGGCACTGGCGTTCCAAATCAGGTCGGACCTTCGGCCACAGCCAGCGACACGTTAGCGCAGGAGGCCAGTCACAATCACCTCCCCTCCCCTAGCTCCCCTCACTCTGCTACCTCAGGTGGACAGCAAGGCACGGTGCACACCAAAGAGAGCAAGCCTTCAGGAAATGGGCATTCCGCAGGGACGCCTAACAGCACTGCCACTGCAGAGGGACTGCCTAATCACGTCCATCAGGGCCAGGCAGACGCTGCTGGGGCGAAACCCTGCTCACCAGGTGTACTTAGTTCAGACAATCCTCAGCTCTCTGCCTTGTTGATTGGAAAAGCCaatgatagtaataatagtaatggcGATGGGTTGACGGCTGCCGGCACAAAGCTTAACAACGTTCACTCAAGTCTGCACCAGGGGCTCAAGGCACAGGAGAACTCGGTGGCCTCCTCCCCGTCTTCTGCCATGTCCACGGCCACACCTTCACCCAAATCAGCAGATCATCACAACACTCAGAACAGTGTTAACAGCCTTAACAGCCCCACGCTCAACGGCAAAGGTCTGGAGGACTCTCAGAGCCCCTTGAAGGTGGCTTCTCCACTGGTTTGTCATAAACCCAAACCTCCCTCTTTTGCCCTGTGGTCTTCGGTCTCCATCTACCCCAGCTCCAGTGATGTGCTTAAAGCATGCCGAAACCTGGGGAAGAATGGTGTGTCCAGTAACAGCATCTTGCTGGACAAGTGTCCCCCTCCTCGGTTACCAGCTGCACCCTTCCCAGCTCTGCCAAAGGACAAGCTCAATCCTCCCACCCCTAGTATTTATTTGGAGAACAAGAGGGATGCTTTTTTTCCTCCGCTACACCAATTCTGCACAAATGCAGCCAACCCCGTTACGGTGATCCGTGGCCTGGCTGGAGCACTCAAGCTAGACCTAGGATTGTTCTCTACCAAGACTCTGGTGGAGGCTAACCCAGAGCACCTGGTGGAGGTGAGGACTCAGTTATCTCAGCCCACTGATGAGAACTGGGATGTGACGGGAAGCAGGAAAATGTGGCGTTTTGAGAGCAGCCGGTCTCACACCACCATCGCCAGATACGCACAGTACCAGGCCTCGTCTTTCCAGGAATCGTTGCGGgaggaaaatgaaaagaaagggCAGAAAGACCACTCAGACACAGAATCTGCTCCATCAGAAAATGTGGTCCGCAGAAGAAGAGGTCCCTTTAAGCACATCAAGTTTGGGACCAACATTGACTTATCAGATGAGAAAAAGTGGAAGCTGCAGCTGGCTGAGTTGAGTAAGCTGCCTGCCTTCGTGCGGGTGGTGTCTGCAGGGAATCTGCTCAGTCATGTGGGCCACACCATTCTCGGCATGAACACAGTCCAGCTCTATATGAAGGTCCCAGGCAGCAGGACACCAGgtCATCAAGAAAATAACAACTTCTGCTCTGTTAATATCAACATCGGCCCTGGAGATTGTGAATGGTTTGCTGTTCCTGAGCCATACTGGGGCGTAATGAATGACTTCTGTGAAAAGAATAATATAAATTACCTAATGGGCTCATGGTGGCCAAATCTAGAGGACTTGTATGAGGCCAATGTTCCAGTGTATCGCTTTATCCAGCGACCAGGTGATCTGGTCTGGCTCAATACTGGCACTGTGCATTGGGTTCAGGCTATTGGCTGGTGCAACAACATTGCCTGGAATGTAGGACCACTCACTGTGCATCAGTACAAGTTGGCTGTGGAACGCTATGAGTGGAACAAACTCCAGAGTGTCAAATCCATCGTTCCCATGATTCACCTCTCTTGGAACATGGCCAGGAACATCAAAGTGTCAGACCACAAACTCTTTGAGATGATCAAGTATTGTTTGTTGAGGACACTAAAGCAGTGTCAGACGTTGAGGGAGGCGCTTATAGCTGCTGGAAAAGAGCTAGTTTGGCACGGAAGGACCAAGGACGAACCTGCTCACTACTGTAGCATCTGTGAGGTGGAGGTCTTTGATCTGCTGTTTGTCACCAGTGAGAGTAACTCACGTAAGACATACGTGGTGCACTGCCAGGGCTGTGCACGGAGATGCAGTCCTAACCTTGAGAACTTTGTGGTTTTAGAGCAGTACAGAATAGAGGACCTCATGCAAGTGTATGACCAGTTCACATTAGCCCCACCTCTGCCCTCCTCCTCAACTTGACGTTAACATTAACGGTTCTTCGGATAAAACCCTGGAACGCAACACATCTCTTTCTGATATTCAGGAGACCTGACCCAGTTCCACACCACTGGTTTCTGTAGCAAACCCCACAAGGCTGCTGGTTCTGAGCTGTTTGTCTATGCAACCTTGCCAAGTATGGAGTTCTGGCCCACTGGAGTGAAGTGGGATCGTCTTCATCTTCAGGACTGTTTCAGCTTGTTCAGCACCACttctctttgaaacacaaaCTACAAATAGACTAATTGCTGAGGAAAATGGATTTGTGTATATACCACAAATGGCAAAATCACTCAAAACTACTGActcttccttttttattttactgttgcTTTAATCCTCTTTTTTGTCGTTTCTTTTGTCTTCTGTACTTCATGTACGAGCTAATACATgattttctttgtctttaagTACTACCGTAGCTGGGCTTTTTTTGTTCAACATTTTCTTtaggtaacaaaaaaaaagaaattgtaatgtgaattttttttttttttctttttaaaaatatttttgtcttttcttaaGGAAAAAGTTAAGTTGGGGGGATAGCCAAGTCACAAAGAAAAATGGGTTGCACATAGACAAAGgaataaactttaattttttttgtgttatttctaaTCTTGTTGTAAATTTAcactatttataaatatttattgcttgaaaatatttgttgatggaatgctgttattttttttcagagttcCTGCCATTAAATTTTATGGAGTAATgtcattttgaacatttctctttttacattttctatacaCGAATAAAACTGCTTAGCGAGCATTGTACAGAAACATGAAGATTGATATGGTTTATGGGTTACTAATCAGAGTTgtctttgtaattaaaatattcttctTTTGTGATGAAA

Function

GO:

id name namespace
GO:0060324 face development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251703.1 lncRNA upstream 21883 16506720 ~ 16519350 (+) True LOC122351146
TU104694 lncRNA upstream 30539 16506760 ~ 16510694 (+) False LOC122351146
XR_006251704.1 lncRNA upstream 30658 16506720 ~ 16510575 (+) False LOC122351146
TU104680 lncRNA upstream 88415 16452306 ~ 16452818 (+) True G70767
TU104679 lncRNA upstream 151318 16389646 ~ 16389915 (+) True G70766
TU104715 lncRNA downstream 879 16581192 ~ 16581462 (+) True G70791
TU104717 lncRNA downstream 1615 16581928 ~ 16583350 (+) True G70792
TU104718 lncRNA downstream 3452 16583765 ~ 16584095 (+) True G70793
XR_006251711.1 lncRNA downstream 6328 16586641 ~ 16599872 (+) True LOC122351189
TU104719 lncRNA downstream 13805 16594118 ~ 16594380 (+) True G70794
XM_043249463.1 mRNA upstream 301580 16237206 ~ 16239653 (+) False LOC122352002
XM_043249464.1 mRNA upstream 301580 16237559 ~ 16239653 (+) True LOC122352002
XM_043249465.1 mRNA upstream 301580 16237559 ~ 16239653 (+) False LOC122352002
XM_043249462.1 mRNA upstream 304945 16233277 ~ 16236288 (+) True LOC122352001
XM_043249461.1 mRNA upstream 308177 16230538 ~ 16233056 (+) True LOC122352000
XM_043249529.1 mRNA downstream 104433 16684746 ~ 16694462 (+) True ccdc80
XM_043249530.1 mRNA downstream 104433 16684746 ~ 16694462 (+) False ccdc80
XM_043249381.1 mRNA downstream 119452 16699765 ~ 16713826 (+) True f5
XM_043249389.1 mRNA downstream 133661 16713974 ~ 16720587 (+) True gpr161a
XM_043249499.1 mRNA downstream 165580 16745893 ~ 16749701 (+) True mpc2b
TU104501 other upstream 795127 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 830056 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 1116194 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 2859242 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 3117407 13423714 ~ 13423826 (+) True trnal-caa
TU104743 other downstream 148194 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 165586 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 336448 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 623484 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 758814 17339127 ~ 17339622 (+) True G71130

Expression Profile